data_3V3Z # _model_server_result.job_id 7AxlKQjDdbGcA9OV7SAHog _model_server_result.datetime_utc '2024-11-22 16:52:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v3z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":702}' # _entry.id 3V3Z # _exptl.entry_id 3V3Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3V3Z _cell.length_a 140.13 _cell.length_b 140.13 _cell.length_c 186.03 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V3Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 W N N ? 4 X N N ? 4 Y N N ? 4 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 J K K . H K 1 1_555 A O MET 125 H MET 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? metalc ? metalc2 J K K . H K 1 1_555 A O ALA 128 H ALA 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc3 J K K . H K 1 1_555 A O PHE 131 H PHE 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc4 B NE2 HIS 190 L HIS 190 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc5 B NE2 HIS 230 L HIS 230 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc6 C NE2 HIS 219 M HIS 219 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc7 C OE2 GLU 234 M GLU 234 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc8 C OE1 GLU 234 M GLU 234 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc9 C NE2 HIS 266 M HIS 266 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 506 n n N1 CM1 LDA sing 507 n n N1 CM2 LDA sing 508 n n N1 C1 LDA sing 509 n n CM1 HM11 LDA sing 510 n n CM1 HM12 LDA sing 511 n n CM1 HM13 LDA sing 512 n n CM2 HM21 LDA sing 513 n n CM2 HM22 LDA sing 514 n n CM2 HM23 LDA sing 515 n n C1 C2 LDA sing 516 n n C1 H11 LDA sing 517 n n C1 H12 LDA sing 518 n n C2 C3 LDA sing 519 n n C2 H21 LDA sing 520 n n C2 H22 LDA sing 521 n n C3 C4 LDA sing 522 n n C3 H31 LDA sing 523 n n C3 H32 LDA sing 524 n n C4 C5 LDA sing 525 n n C4 H41 LDA sing 526 n n C4 H42 LDA sing 527 n n C5 C6 LDA sing 528 n n C5 H51 LDA sing 529 n n C5 H52 LDA sing 530 n n C6 C7 LDA sing 531 n n C6 H61 LDA sing 532 n n C6 H62 LDA sing 533 n n C7 C8 LDA sing 534 n n C7 H71 LDA sing 535 n n C7 H72 LDA sing 536 n n C8 C9 LDA sing 537 n n C8 H81 LDA sing 538 n n C8 H82 LDA sing 539 n n C9 C10 LDA sing 540 n n C9 H91 LDA sing 541 n n C9 H92 LDA sing 542 n n C10 C11 LDA sing 543 n n C10 H101 LDA sing 544 n n C10 H102 LDA sing 545 n n C11 C12 LDA sing 546 n n C11 H111 LDA sing 547 n n C11 H112 LDA sing 548 n n C12 H121 LDA sing 549 n n C12 H122 LDA sing 550 n n C12 H123 LDA sing 551 n n # _atom_sites.entry_id 3V3Z _atom_sites.fract_transf_matrix[1][1] 0.007136 _atom_sites.fract_transf_matrix[1][2] 0.00412 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 704 704 LDA LDA . E 5 PO4 H 1 803 803 PO4 PO4 . F 5 PO4 H 1 804 804 PO4 PO4 . G 6 HTO H 1 2 2 HTO HTO . H 6 HTO H 1 3 3 HTO HTO . I 7 DIO H 1 251 41 DIO DIO . J 8 K H 1 1 1 K K . K 9 BCL L 1 301 301 BCL BCL . L 9 BCL L 1 302 302 BCL BCL . M 9 BCL L 1 304 304 BCL BCL . N 10 BPH L 1 402 402 BPH BPH . O 11 U10 L 1 502 502 U10 U10 . P 6 HTO L 1 282 1 HTO HTO . Q 7 DIO L 1 283 40 DIO DIO . R 9 BCL M 1 303 303 BCL BCL . S 10 BPH M 1 401 401 BPH BPH . T 12 FE M 1 500 500 FE FE . U 11 U10 M 1 501 501 U10 U10 . V 13 SPN M 1 600 600 SPN SPN . W 4 LDA M 1 701 701 LDA LDA . X 4 LDA M 1 702 702 LDA LDA . Y 4 LDA M 1 703 703 LDA LDA . Z 4 LDA M 1 705 705 LDA LDA . AA 5 PO4 M 1 800 800 PO4 PO4 . BA 5 PO4 M 1 801 801 PO4 PO4 . CA 5 PO4 M 1 802 802 PO4 PO4 . DA 14 CL M 1 304 1 CL CL . EA 15 HOH H 1 6 6 HOH HOH . EA 15 HOH H 2 252 19 HOH HOH . EA 15 HOH H 3 253 29 HOH HOH . EA 15 HOH H 4 254 30 HOH HOH . EA 15 HOH H 5 255 32 HOH HOH . EA 15 HOH H 6 256 33 HOH HOH . EA 15 HOH H 7 257 34 HOH HOH . EA 15 HOH H 8 258 35 HOH HOH . EA 15 HOH H 9 259 36 HOH HOH . EA 15 HOH H 10 260 38 HOH HOH . EA 15 HOH H 11 261 41 HOH HOH . EA 15 HOH H 12 262 43 HOH HOH . EA 15 HOH H 13 263 46 HOH HOH . FA 15 HOH L 1 284 1 HOH HOH . FA 15 HOH L 2 285 2 HOH HOH . FA 15 HOH L 3 286 3 HOH HOH . FA 15 HOH L 4 287 4 HOH HOH . FA 15 HOH L 5 288 5 HOH HOH . FA 15 HOH L 6 289 8 HOH HOH . FA 15 HOH L 7 290 9 HOH HOH . FA 15 HOH L 8 291 11 HOH HOH . FA 15 HOH L 9 292 15 HOH HOH . FA 15 HOH L 10 293 16 HOH HOH . FA 15 HOH L 11 294 31 HOH HOH . FA 15 HOH L 12 295 37 HOH HOH . FA 15 HOH L 13 296 39 HOH HOH . FA 15 HOH L 14 297 40 HOH HOH . FA 15 HOH L 15 298 42 HOH HOH . FA 15 HOH L 16 299 45 HOH HOH . FA 15 HOH L 17 300 47 HOH HOH . FA 15 HOH L 18 303 49 HOH HOH . FA 15 HOH L 19 305 50 HOH HOH . GA 15 HOH M 1 305 7 HOH HOH . GA 15 HOH M 2 306 10 HOH HOH . GA 15 HOH M 3 307 12 HOH HOH . GA 15 HOH M 4 308 13 HOH HOH . GA 15 HOH M 5 309 14 HOH HOH . GA 15 HOH M 6 310 18 HOH HOH . GA 15 HOH M 7 311 20 HOH HOH . GA 15 HOH M 8 312 21 HOH HOH . GA 15 HOH M 9 313 22 HOH HOH . GA 15 HOH M 10 314 23 HOH HOH . GA 15 HOH M 11 315 24 HOH HOH . GA 15 HOH M 12 316 25 HOH HOH . GA 15 HOH M 13 317 26 HOH HOH . GA 15 HOH M 14 318 27 HOH HOH . GA 15 HOH M 15 319 28 HOH HOH . GA 15 HOH M 16 320 44 HOH HOH . GA 15 HOH M 17 321 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . X 4 -54.992 38.37 25.402 1 120.86 ? N1 LDA 702 M 1 HETATM 2 O O1 LDA . . . X 4 -54.048 39.076 25.85 1 120.89 ? O1 LDA 702 M 1 HETATM 3 C CM1 LDA . . . X 4 -55.464 37.42 26.433 1 121.21 ? CM1 LDA 702 M 1 HETATM 4 C CM2 LDA . . . X 4 -56.143 39.239 25.087 1 120.76 ? CM2 LDA 702 M 1 HETATM 5 C C1 LDA . . . X 4 -54.586 37.667 24.176 1 119.63 ? C1 LDA 702 M 1 HETATM 6 C C2 LDA . . . X 4 -53.255 36.909 24.347 1 116.79 ? C2 LDA 702 M 1 HETATM 7 C C3 LDA . . . X 4 -52.73 36.367 23.015 1 113.91 ? C3 LDA 702 M 1 HETATM 8 C C4 LDA . . . X 4 -53.195 34.939 22.718 1 111.56 ? C4 LDA 702 M 1 HETATM 9 C C5 LDA . . . X 4 -53.496 34.723 21.233 1 109.38 ? C5 LDA 702 M 1 HETATM 10 C C6 LDA . . . X 4 -52.761 33.526 20.631 1 106.95 ? C6 LDA 702 M 1 HETATM 11 C C7 LDA . . . X 4 -52.428 33.77 19.16 1 105 ? C7 LDA 702 M 1 HETATM 12 C C8 LDA . . . X 4 -52.594 32.513 18.302 1 102.73 ? C8 LDA 702 M 1 HETATM 13 C C9 LDA . . . X 4 -52.788 32.851 16.822 1 100.21 ? C9 LDA 702 M 1 HETATM 14 C C10 LDA . . . X 4 -51.625 32.38 15.949 1 98.32 ? C10 LDA 702 M 1 HETATM 15 C C11 LDA . . . X 4 -51.744 32.914 14.524 1 97.03 ? C11 LDA 702 M 1 HETATM 16 C C12 LDA . . . X 4 -51.141 31.964 13.495 1 96.07 ? C12 LDA 702 M 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #