data_3V4F # _model_server_result.job_id 02z9fsu0FdHCWJICaJ-NEQ _model_server_result.datetime_utc '2024-11-22 19:43:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v4f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":191}' # _entry.id 3V4F # _exptl.entry_id 3V4F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3V4F _cell.length_a 88.521 _cell.length_b 88.521 _cell.length_c 134.06 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V4F _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_675 -y+1,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 153.32287 0 3 'crystal symmetry operation' 3_465 -x+y-1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -132.7815 76.661435 0 4 'crystal symmetry operation' 4_464 y-1,x+1,-z-1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -132.7815 76.661435 -134.06 5 'crystal symmetry operation' 5_674 x-y+1,-y+2,-z-1 1 0 0 0 -1 0 0 0 -1 0 153.32287 -134.06 6 'crystal symmetry operation' 6_554 -x,-x+y,-z-1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -134.06 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 C MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc2 A O PHE 28 A PHE 28 1_555 B CA CA . A CA 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc3 A OD1 ASP 30 A ASP 30 1_555 B CA CA . A CA 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc4 A OG1 THR 35 A THR 35 1_555 C MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc5 A O ARG 102 A ARG 102 1_555 F CA CA . A CA 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc6 A OD1 ASP 105 A ASP 105 1_555 F CA CA . A CA 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc7 A OD2 ASP 105 A ASP 105 1_555 F CA CA . A CA 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? metalc ? metalc8 G O2G GNP . A GNP 190 1_555 C MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc9 G O2B GNP . A GNP 190 1_555 C MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc10 B CA CA . A CA 191 1_555 H O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc11 B CA CA . A CA 191 1_555 H O HOH . A HOH 1474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc12 C MG MG . A MG 192 1_555 H O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc13 C MG MG . A MG 192 1_555 H O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc14 D MG MG . A MG 194 1_555 H O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc15 D MG MG . A MG 194 1_555 H O HOH . A HOH 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc16 D MG MG . A MG 194 1_555 H O HOH . A HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3V4F _atom_sites.fract_transf_matrix[1][1] 0.011297 _atom_sites.fract_transf_matrix[1][2] 0.006522 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013044 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007459 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 191 191 CA CA . C 3 MG A 1 192 192 MG MG . D 3 MG A 1 194 194 MG MG . E 4 DTU A 1 201 201 DTU DTU . F 2 CA A 1 196 196 CA CA . G 5 GNP A 1 190 190 GNP GNP . H 6 HOH A 1 175 175 HOH HOH . H 6 HOH A 2 301 301 HOH HOH . H 6 HOH A 3 302 302 HOH HOH . H 6 HOH A 4 304 304 HOH HOH . H 6 HOH A 5 306 306 HOH HOH . H 6 HOH A 6 307 307 HOH HOH . H 6 HOH A 7 308 308 HOH HOH . H 6 HOH A 8 309 309 HOH HOH . H 6 HOH A 9 310 310 HOH HOH . H 6 HOH A 10 311 311 HOH HOH . H 6 HOH A 11 312 312 HOH HOH . H 6 HOH A 12 313 313 HOH HOH . H 6 HOH A 13 314 314 HOH HOH . H 6 HOH A 14 315 315 HOH HOH . H 6 HOH A 15 316 316 HOH HOH . H 6 HOH A 16 317 317 HOH HOH . H 6 HOH A 17 318 318 HOH HOH . H 6 HOH A 18 320 320 HOH HOH . H 6 HOH A 19 321 321 HOH HOH . H 6 HOH A 20 322 322 HOH HOH . H 6 HOH A 21 323 323 HOH HOH . H 6 HOH A 22 324 324 HOH HOH . H 6 HOH A 23 325 325 HOH HOH . H 6 HOH A 24 326 326 HOH HOH . H 6 HOH A 25 327 327 HOH HOH . H 6 HOH A 26 328 328 HOH HOH . H 6 HOH A 27 329 329 HOH HOH . H 6 HOH A 28 330 330 HOH HOH . H 6 HOH A 29 331 331 HOH HOH . H 6 HOH A 30 332 332 HOH HOH . H 6 HOH A 31 333 333 HOH HOH . H 6 HOH A 32 334 334 HOH HOH . H 6 HOH A 33 336 336 HOH HOH . H 6 HOH A 34 337 337 HOH HOH . H 6 HOH A 35 338 338 HOH HOH . H 6 HOH A 36 339 339 HOH HOH . H 6 HOH A 37 341 341 HOH HOH . H 6 HOH A 38 342 342 HOH HOH . H 6 HOH A 39 343 343 HOH HOH . H 6 HOH A 40 344 344 HOH HOH . H 6 HOH A 41 345 345 HOH HOH . H 6 HOH A 42 346 346 HOH HOH . H 6 HOH A 43 347 347 HOH HOH . H 6 HOH A 44 348 348 HOH HOH . H 6 HOH A 45 349 349 HOH HOH . H 6 HOH A 46 350 350 HOH HOH . H 6 HOH A 47 351 351 HOH HOH . H 6 HOH A 48 352 352 HOH HOH . H 6 HOH A 49 353 353 HOH HOH . H 6 HOH A 50 354 354 HOH HOH . H 6 HOH A 51 355 355 HOH HOH . H 6 HOH A 52 357 357 HOH HOH . H 6 HOH A 53 359 359 HOH HOH . H 6 HOH A 54 360 360 HOH HOH . H 6 HOH A 55 361 361 HOH HOH . H 6 HOH A 56 363 363 HOH HOH . H 6 HOH A 57 364 364 HOH HOH . H 6 HOH A 58 365 365 HOH HOH . H 6 HOH A 59 366 366 HOH HOH . H 6 HOH A 60 368 368 HOH HOH . H 6 HOH A 61 369 369 HOH HOH . H 6 HOH A 62 370 370 HOH HOH . H 6 HOH A 63 371 371 HOH HOH . H 6 HOH A 64 372 372 HOH HOH . H 6 HOH A 65 373 373 HOH HOH . H 6 HOH A 66 374 374 HOH HOH . H 6 HOH A 67 375 375 HOH HOH . H 6 HOH A 68 376 376 HOH HOH . H 6 HOH A 69 377 377 HOH HOH . H 6 HOH A 70 379 379 HOH HOH . H 6 HOH A 71 380 380 HOH HOH . H 6 HOH A 72 381 381 HOH HOH . H 6 HOH A 73 383 383 HOH HOH . H 6 HOH A 74 384 384 HOH HOH . H 6 HOH A 75 385 385 HOH HOH . H 6 HOH A 76 388 388 HOH HOH . H 6 HOH A 77 389 389 HOH HOH . H 6 HOH A 78 390 390 HOH HOH . H 6 HOH A 79 391 391 HOH HOH . H 6 HOH A 80 392 392 HOH HOH . H 6 HOH A 81 394 394 HOH HOH . H 6 HOH A 82 395 395 HOH HOH . H 6 HOH A 83 396 396 HOH HOH . H 6 HOH A 84 397 397 HOH HOH . H 6 HOH A 85 398 398 HOH HOH . H 6 HOH A 86 401 401 HOH HOH . H 6 HOH A 87 405 405 HOH HOH . H 6 HOH A 88 406 406 HOH HOH . H 6 HOH A 89 407 407 HOH HOH . H 6 HOH A 90 408 408 HOH HOH . H 6 HOH A 91 409 409 HOH HOH . H 6 HOH A 92 410 410 HOH HOH . H 6 HOH A 93 412 412 HOH HOH . H 6 HOH A 94 413 413 HOH HOH . H 6 HOH A 95 414 414 HOH HOH . H 6 HOH A 96 415 415 HOH HOH . H 6 HOH A 97 416 416 HOH HOH . H 6 HOH A 98 418 418 HOH HOH . H 6 HOH A 99 421 421 HOH HOH . H 6 HOH A 100 423 423 HOH HOH . H 6 HOH A 101 424 424 HOH HOH . H 6 HOH A 102 427 427 HOH HOH . H 6 HOH A 103 428 428 HOH HOH . H 6 HOH A 104 430 430 HOH HOH . H 6 HOH A 105 434 434 HOH HOH . H 6 HOH A 106 436 436 HOH HOH . H 6 HOH A 107 440 440 HOH HOH . H 6 HOH A 108 442 442 HOH HOH . H 6 HOH A 109 443 443 HOH HOH . H 6 HOH A 110 452 452 HOH HOH . H 6 HOH A 111 454 454 HOH HOH . H 6 HOH A 112 461 461 HOH HOH . H 6 HOH A 113 462 462 HOH HOH . H 6 HOH A 114 463 463 HOH HOH . H 6 HOH A 115 468 468 HOH HOH . H 6 HOH A 116 469 469 HOH HOH . H 6 HOH A 117 474 474 HOH HOH . H 6 HOH A 118 475 475 HOH HOH . H 6 HOH A 119 476 476 HOH HOH . H 6 HOH A 120 485 485 HOH HOH . H 6 HOH A 121 495 495 HOH HOH . H 6 HOH A 122 500 500 HOH HOH . H 6 HOH A 123 503 503 HOH HOH . H 6 HOH A 124 504 504 HOH HOH . H 6 HOH A 125 505 505 HOH HOH . H 6 HOH A 126 507 507 HOH HOH . H 6 HOH A 127 508 508 HOH HOH . H 6 HOH A 128 510 510 HOH HOH . H 6 HOH A 129 519 519 HOH HOH . H 6 HOH A 130 524 524 HOH HOH . H 6 HOH A 131 539 539 HOH HOH . H 6 HOH A 132 542 542 HOH HOH . H 6 HOH A 133 543 543 HOH HOH . H 6 HOH A 134 544 544 HOH HOH . H 6 HOH A 135 545 545 HOH HOH . H 6 HOH A 136 1471 1471 HOH HOH . H 6 HOH A 137 1472 1472 HOH HOH . H 6 HOH A 138 1473 1473 HOH HOH . H 6 HOH A 139 1474 1474 HOH HOH . H 6 HOH A 140 1475 1475 HOH HOH . H 6 HOH A 141 1476 1476 HOH HOH . H 6 HOH A 142 1477 1477 HOH HOH . H 6 HOH A 143 1478 1478 HOH HOH . H 6 HOH A 144 1479 1479 HOH HOH . H 6 HOH A 145 1480 1480 HOH HOH . H 6 HOH A 146 1481 1481 HOH HOH . H 6 HOH A 147 1482 1482 HOH HOH . H 6 HOH A 148 1483 1483 HOH HOH . H 6 HOH A 149 1484 1484 HOH HOH . H 6 HOH A 150 1485 1485 HOH HOH . H 6 HOH A 151 1486 1486 HOH HOH . H 6 HOH A 152 1487 1487 HOH HOH . H 6 HOH A 153 1488 1488 HOH HOH . H 6 HOH A 154 1489 1489 HOH HOH . H 6 HOH A 155 1490 1490 HOH HOH . H 6 HOH A 156 1491 1491 HOH HOH . H 6 HOH A 157 1492 1492 HOH HOH . H 6 HOH A 158 1493 1493 HOH HOH . H 6 HOH A 159 1494 1494 HOH HOH . H 6 HOH A 160 1495 1495 HOH HOH . H 6 HOH A 161 1496 1496 HOH HOH . H 6 HOH A 162 1497 1497 HOH HOH . H 6 HOH A 163 1498 1498 HOH HOH . H 6 HOH A 164 1499 1499 HOH HOH . H 6 HOH A 165 1500 1500 HOH HOH . H 6 HOH A 166 1501 1501 HOH HOH . H 6 HOH A 167 1502 1502 HOH HOH . H 6 HOH A 168 1503 1503 HOH HOH . H 6 HOH A 169 1504 1504 HOH HOH . H 6 HOH A 170 1505 1505 HOH HOH . H 6 HOH A 171 1506 1506 HOH HOH . H 6 HOH A 172 1507 1507 HOH HOH . H 6 HOH A 173 1508 1508 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -4.605 _atom_site.Cartn_y 79.05 _atom_site.Cartn_z -72.103 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 13.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 191 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #