data_3V50 # _model_server_result.job_id aZouOSt9-kCY8bMzaPa9_Q _model_server_result.datetime_utc '2024-11-24 23:31:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v50 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3V50 # _exptl.entry_id 3V50 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 365.356 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R)-4-[(4-CARBOXYBUTANOYL)OXY]-N-[(1E)-3-OXOPROP-1-EN-1-YL]-3-SULFINO-D-VALINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V50 _cell.length_a 49.671 _cell.length_b 55.479 _cell.length_c 83.62 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V50 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 52 A CYS 77 1_555 A SG CYS 98 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? covale ? covale1 A OG SER 45 A SER 70 1_555 B C7 SA2 . A SA2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? # _chem_comp.formula 'C13 H19 N O9 S' _chem_comp.formula_weight 365.356 _chem_comp.id SA2 _chem_comp.mon_nstd_flag . _chem_comp.name (3R)-4-[(4-CARBOXYBUTANOYL)OXY]-N-[(1E)-3-OXOPROP-1-EN-1-YL]-3-SULFINO-D-VALINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '4-AZA-5-CARBOXY-6-SULFENATE-6-METHYL-8-OXA-9-OXO-TRIS-2-TRANS-DECENEDIOIC ACID' # _atom_sites.entry_id 3V50 _atom_sites.fract_transf_matrix[1][1] 0.020132 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018025 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SA2 A 1 301 611 SA2 SA2 . C 3 MA4 A 1 302 400 MA4 MA4 . D 3 MA4 A 1 303 401 MA4 MA4 . E 4 HOH A 1 401 1 HOH HOH . E 4 HOH A 2 402 2 HOH HOH . E 4 HOH A 3 403 3 HOH HOH . E 4 HOH A 4 404 4 HOH HOH . E 4 HOH A 5 405 5 HOH HOH . E 4 HOH A 6 406 6 HOH HOH . E 4 HOH A 7 407 7 HOH HOH . E 4 HOH A 8 408 8 HOH HOH . E 4 HOH A 9 409 9 HOH HOH . E 4 HOH A 10 410 10 HOH HOH . E 4 HOH A 11 411 11 HOH HOH . E 4 HOH A 12 412 12 HOH HOH . E 4 HOH A 13 413 13 HOH HOH . E 4 HOH A 14 414 14 HOH HOH . E 4 HOH A 15 415 15 HOH HOH . E 4 HOH A 16 416 16 HOH HOH . E 4 HOH A 17 417 17 HOH HOH . E 4 HOH A 18 418 18 HOH HOH . E 4 HOH A 19 419 19 HOH HOH . E 4 HOH A 20 420 20 HOH HOH . E 4 HOH A 21 421 21 HOH HOH . E 4 HOH A 22 422 22 HOH HOH . E 4 HOH A 23 423 23 HOH HOH . E 4 HOH A 24 424 24 HOH HOH . E 4 HOH A 25 425 25 HOH HOH . E 4 HOH A 26 426 26 HOH HOH . E 4 HOH A 27 427 27 HOH HOH . E 4 HOH A 28 428 28 HOH HOH . E 4 HOH A 29 429 29 HOH HOH . E 4 HOH A 30 430 30 HOH HOH . E 4 HOH A 31 431 31 HOH HOH . E 4 HOH A 32 432 32 HOH HOH . E 4 HOH A 33 433 33 HOH HOH . E 4 HOH A 34 434 34 HOH HOH . E 4 HOH A 35 435 35 HOH HOH . E 4 HOH A 36 436 36 HOH HOH . E 4 HOH A 37 437 37 HOH HOH . E 4 HOH A 38 438 38 HOH HOH . E 4 HOH A 39 439 39 HOH HOH . E 4 HOH A 40 440 40 HOH HOH . E 4 HOH A 41 441 41 HOH HOH . E 4 HOH A 42 442 42 HOH HOH . E 4 HOH A 43 443 43 HOH HOH . E 4 HOH A 44 444 44 HOH HOH . E 4 HOH A 45 445 45 HOH HOH . E 4 HOH A 46 446 46 HOH HOH . E 4 HOH A 47 447 47 HOH HOH . E 4 HOH A 48 448 48 HOH HOH . E 4 HOH A 49 449 49 HOH HOH . E 4 HOH A 50 450 50 HOH HOH . E 4 HOH A 51 451 52 HOH HOH . E 4 HOH A 52 452 53 HOH HOH . E 4 HOH A 53 453 54 HOH HOH . E 4 HOH A 54 454 55 HOH HOH . E 4 HOH A 55 455 56 HOH HOH . E 4 HOH A 56 456 57 HOH HOH . E 4 HOH A 57 457 58 HOH HOH . E 4 HOH A 58 458 59 HOH HOH . E 4 HOH A 59 459 60 HOH HOH . E 4 HOH A 60 460 61 HOH HOH . E 4 HOH A 61 461 62 HOH HOH . E 4 HOH A 62 462 63 HOH HOH . E 4 HOH A 63 463 64 HOH HOH . E 4 HOH A 64 464 65 HOH HOH . E 4 HOH A 65 465 66 HOH HOH . E 4 HOH A 66 466 67 HOH HOH . E 4 HOH A 67 467 70 HOH HOH . E 4 HOH A 68 468 71 HOH HOH . E 4 HOH A 69 469 72 HOH HOH . E 4 HOH A 70 470 73 HOH HOH . E 4 HOH A 71 471 75 HOH HOH . E 4 HOH A 72 472 76 HOH HOH . E 4 HOH A 73 473 77 HOH HOH . E 4 HOH A 74 474 78 HOH HOH . E 4 HOH A 75 475 79 HOH HOH . E 4 HOH A 76 476 80 HOH HOH . E 4 HOH A 77 477 82 HOH HOH . E 4 HOH A 78 478 83 HOH HOH . E 4 HOH A 79 479 84 HOH HOH . E 4 HOH A 80 480 85 HOH HOH . E 4 HOH A 81 481 86 HOH HOH . E 4 HOH A 82 482 87 HOH HOH . E 4 HOH A 83 483 88 HOH HOH . E 4 HOH A 84 484 89 HOH HOH . E 4 HOH A 85 485 90 HOH HOH . E 4 HOH A 86 486 91 HOH HOH . E 4 HOH A 87 487 92 HOH HOH . E 4 HOH A 88 488 93 HOH HOH . E 4 HOH A 89 489 94 HOH HOH . E 4 HOH A 90 490 96 HOH HOH . E 4 HOH A 91 491 97 HOH HOH . E 4 HOH A 92 492 98 HOH HOH . E 4 HOH A 93 493 100 HOH HOH . E 4 HOH A 94 494 101 HOH HOH . E 4 HOH A 95 495 102 HOH HOH . E 4 HOH A 96 496 103 HOH HOH . E 4 HOH A 97 497 104 HOH HOH . E 4 HOH A 98 498 106 HOH HOH . E 4 HOH A 99 499 107 HOH HOH . E 4 HOH A 100 500 108 HOH HOH . E 4 HOH A 101 501 109 HOH HOH . E 4 HOH A 102 502 110 HOH HOH . E 4 HOH A 103 503 112 HOH HOH . E 4 HOH A 104 504 113 HOH HOH . E 4 HOH A 105 505 114 HOH HOH . E 4 HOH A 106 506 115 HOH HOH . E 4 HOH A 107 507 116 HOH HOH . E 4 HOH A 108 508 117 HOH HOH . E 4 HOH A 109 509 118 HOH HOH . E 4 HOH A 110 510 119 HOH HOH . E 4 HOH A 111 511 120 HOH HOH . E 4 HOH A 112 512 121 HOH HOH . E 4 HOH A 113 513 122 HOH HOH . E 4 HOH A 114 514 123 HOH HOH . E 4 HOH A 115 515 127 HOH HOH . E 4 HOH A 116 516 128 HOH HOH . E 4 HOH A 117 517 129 HOH HOH . E 4 HOH A 118 518 130 HOH HOH . E 4 HOH A 119 519 132 HOH HOH . E 4 HOH A 120 520 133 HOH HOH . E 4 HOH A 121 521 134 HOH HOH . E 4 HOH A 122 522 135 HOH HOH . E 4 HOH A 123 523 136 HOH HOH . E 4 HOH A 124 524 138 HOH HOH . E 4 HOH A 125 525 139 HOH HOH . E 4 HOH A 126 526 140 HOH HOH . E 4 HOH A 127 527 141 HOH HOH . E 4 HOH A 128 528 142 HOH HOH . E 4 HOH A 129 529 143 HOH HOH . E 4 HOH A 130 530 144 HOH HOH . E 4 HOH A 131 531 145 HOH HOH . E 4 HOH A 132 532 146 HOH HOH . E 4 HOH A 133 533 147 HOH HOH . E 4 HOH A 134 534 148 HOH HOH . E 4 HOH A 135 535 149 HOH HOH . E 4 HOH A 136 536 150 HOH HOH . E 4 HOH A 137 537 151 HOH HOH . E 4 HOH A 138 538 153 HOH HOH . E 4 HOH A 139 539 154 HOH HOH . E 4 HOH A 140 540 155 HOH HOH . E 4 HOH A 141 541 156 HOH HOH . E 4 HOH A 142 542 157 HOH HOH . E 4 HOH A 143 543 158 HOH HOH . E 4 HOH A 144 544 159 HOH HOH . E 4 HOH A 145 545 160 HOH HOH . E 4 HOH A 146 546 161 HOH HOH . E 4 HOH A 147 547 162 HOH HOH . E 4 HOH A 148 548 165 HOH HOH . E 4 HOH A 149 549 166 HOH HOH . E 4 HOH A 150 550 167 HOH HOH . E 4 HOH A 151 551 168 HOH HOH . E 4 HOH A 152 552 169 HOH HOH . E 4 HOH A 153 553 170 HOH HOH . E 4 HOH A 154 554 171 HOH HOH . E 4 HOH A 155 555 172 HOH HOH . E 4 HOH A 156 556 173 HOH HOH . E 4 HOH A 157 557 174 HOH HOH . E 4 HOH A 158 558 175 HOH HOH . E 4 HOH A 159 559 176 HOH HOH . E 4 HOH A 160 560 177 HOH HOH . E 4 HOH A 161 561 178 HOH HOH . E 4 HOH A 162 562 179 HOH HOH . E 4 HOH A 163 563 180 HOH HOH . E 4 HOH A 164 564 181 HOH HOH . E 4 HOH A 165 565 182 HOH HOH . E 4 HOH A 166 566 183 HOH HOH . E 4 HOH A 167 567 184 HOH HOH . E 4 HOH A 168 568 185 HOH HOH . E 4 HOH A 169 569 186 HOH HOH . E 4 HOH A 170 570 187 HOH HOH . E 4 HOH A 171 571 188 HOH HOH . E 4 HOH A 172 572 189 HOH HOH . E 4 HOH A 173 573 190 HOH HOH . E 4 HOH A 174 574 191 HOH HOH . E 4 HOH A 175 575 192 HOH HOH . E 4 HOH A 176 576 194 HOH HOH . E 4 HOH A 177 577 195 HOH HOH . E 4 HOH A 178 578 196 HOH HOH . E 4 HOH A 179 579 197 HOH HOH . E 4 HOH A 180 580 199 HOH HOH . E 4 HOH A 181 581 200 HOH HOH . E 4 HOH A 182 582 202 HOH HOH . E 4 HOH A 183 583 204 HOH HOH . E 4 HOH A 184 584 205 HOH HOH . E 4 HOH A 185 585 206 HOH HOH . E 4 HOH A 186 586 207 HOH HOH . E 4 HOH A 187 587 208 HOH HOH . E 4 HOH A 188 588 209 HOH HOH . E 4 HOH A 189 589 210 HOH HOH . E 4 HOH A 190 590 211 HOH HOH . E 4 HOH A 191 591 212 HOH HOH . E 4 HOH A 192 592 213 HOH HOH . E 4 HOH A 193 593 215 HOH HOH . E 4 HOH A 194 594 216 HOH HOH . E 4 HOH A 195 595 217 HOH HOH . E 4 HOH A 196 596 218 HOH HOH . E 4 HOH A 197 597 219 HOH HOH . E 4 HOH A 198 598 220 HOH HOH . E 4 HOH A 199 599 225 HOH HOH . E 4 HOH A 200 600 227 HOH HOH . E 4 HOH A 201 601 228 HOH HOH . E 4 HOH A 202 602 231 HOH HOH . E 4 HOH A 203 603 232 HOH HOH . E 4 HOH A 204 604 240 HOH HOH . E 4 HOH A 205 605 241 HOH HOH . E 4 HOH A 206 606 243 HOH HOH . E 4 HOH A 207 607 244 HOH HOH . E 4 HOH A 208 608 246 HOH HOH . E 4 HOH A 209 609 248 HOH HOH . E 4 HOH A 210 610 249 HOH HOH . E 4 HOH A 211 611 250 HOH HOH . E 4 HOH A 212 612 251 HOH HOH . E 4 HOH A 213 613 252 HOH HOH . E 4 HOH A 214 614 253 HOH HOH . E 4 HOH A 215 615 254 HOH HOH . E 4 HOH A 216 616 255 HOH HOH . E 4 HOH A 217 617 256 HOH HOH . E 4 HOH A 218 618 257 HOH HOH . E 4 HOH A 219 619 258 HOH HOH . E 4 HOH A 220 620 260 HOH HOH . E 4 HOH A 221 621 261 HOH HOH . E 4 HOH A 222 622 262 HOH HOH . E 4 HOH A 223 623 264 HOH HOH . E 4 HOH A 224 624 265 HOH HOH . E 4 HOH A 225 625 266 HOH HOH . E 4 HOH A 226 626 267 HOH HOH . E 4 HOH A 227 627 269 HOH HOH . E 4 HOH A 228 628 270 HOH HOH . E 4 HOH A 229 629 271 HOH HOH . E 4 HOH A 230 630 274 HOH HOH . E 4 HOH A 231 631 275 HOH HOH . E 4 HOH A 232 632 276 HOH HOH . E 4 HOH A 233 633 277 HOH HOH . E 4 HOH A 234 634 278 HOH HOH . E 4 HOH A 235 635 279 HOH HOH . E 4 HOH A 236 636 280 HOH HOH . E 4 HOH A 237 637 281 HOH HOH . E 4 HOH A 238 638 283 HOH HOH . E 4 HOH A 239 639 284 HOH HOH . E 4 HOH A 240 640 285 HOH HOH . E 4 HOH A 241 641 286 HOH HOH . E 4 HOH A 242 642 289 HOH HOH . E 4 HOH A 243 643 290 HOH HOH . E 4 HOH A 244 644 291 HOH HOH . E 4 HOH A 245 645 292 HOH HOH . E 4 HOH A 246 646 293 HOH HOH . E 4 HOH A 247 647 294 HOH HOH . E 4 HOH A 248 648 295 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 SA2 . . . B 2 -15.024 -3.913 -3.127 1 16.6 ? O23 SA2 301 A 1 HETATM 2 C C20 SA2 . . . B 2 -16.247 -4.066 -2.927 1 16.11 ? C20 SA2 301 A 1 HETATM 3 O O22 SA2 . . . B 2 -17.065 -3.21 -3.366 1 14.53 ? O22 SA2 301 A 1 HETATM 4 C C19 SA2 . . . B 2 -16.721 -5.285 -2.144 1 19.05 ? C19 SA2 301 A 1 HETATM 5 C C18 SA2 . . . B 2 -15.852 -5.408 -0.896 1 20.22 ? C18 SA2 301 A 1 HETATM 6 C C17 SA2 . . . B 2 -16.039 -6.701 -0.098 1 23.78 ? C17 SA2 301 A 1 HETATM 7 C C16 SA2 . . . B 2 -15.709 -7.953 -0.885 1 23.7 ? C16 SA2 301 A 1 HETATM 8 O O24 SA2 . . . B 2 -14.809 -7.973 -1.717 1 24.02 ? O24 SA2 301 A 1 HETATM 9 O O15 SA2 . . . B 2 -16.501 -9.138 -0.609 1 24.52 ? O15 SA2 301 A 1 HETATM 10 C C14 SA2 . . . B 2 -16.184 -10.408 -1.173 1 26 ? C14 SA2 301 A 1 HETATM 11 C C2 SA2 . . . B 2 -17.351 -10.883 -2.026 1 26.44 ? C2 SA2 301 A 1 HETATM 12 S S1 SA2 . . . B 2 -16.881 -12.539 -2.65 1 30.92 ? S1 SA2 301 A 1 HETATM 13 O O13 SA2 . . . B 2 -15.552 -12.417 -3.349 1 29.05 ? O13 SA2 301 A 1 HETATM 14 O O12 SA2 . . . B 2 -16.705 -13.458 -1.474 1 31.91 ? O12 SA2 301 A 1 HETATM 15 C C21 SA2 . . . B 2 -18.628 -11.006 -1.195 1 27.76 ? C21 SA2 301 A 1 HETATM 16 C C3 SA2 . . . B 2 -17.58 -9.904 -3.191 1 25.2 ? C3 SA2 301 A 1 HETATM 17 C C9 SA2 . . . B 2 -18.71 -10.354 -4.082 1 26.1 ? C9 SA2 301 A 1 HETATM 18 O O10 SA2 . . . B 2 -19.768 -9.691 -4.084 1 27 ? O10 SA2 301 A 1 HETATM 19 O O11 SA2 . . . B 2 -18.612 -11.38 -4.804 1 27.32 ? O11 SA2 301 A 1 HETATM 20 N N4 SA2 . . . B 2 -16.326 -9.723 -3.937 1 22.23 ? N4 SA2 301 A 1 HETATM 21 C C5 SA2 . . . B 2 -16.361 -8.714 -4.986 1 18.16 ? C5 SA2 301 A 1 HETATM 22 C C6 SA2 . . . B 2 -16.839 -7.592 -4.865 1 16.13 ? C6 SA2 301 A 1 HETATM 23 C C7 SA2 . . . B 2 -16.312 -6.482 -5.767 1 13.46 ? C7 SA2 301 A 1 HETATM 24 O O8 SA2 . . . B 2 -15.284 -6.596 -6.41 1 11.93 ? O8 SA2 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 442 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #