data_3V51 # _model_server_result.job_id fJoOXi59-Po9bqrmV1XeWQ _model_server_result.datetime_utc '2024-10-19 01:40:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v51 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 3V51 # _exptl.entry_id 3V51 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.928 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{6-[(3-chlorobenzyl)oxy]naphthalen-2-yl}-1-(propan-2-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.9 _cell.angle_gamma 90 _cell.entry_id 3V51 _cell.length_a 48.317 _cell.length_b 72.619 _cell.length_c 67.356 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V51 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H22 Cl N5 O' _chem_comp.formula_weight 443.928 _chem_comp.id I76 _chem_comp.mon_nstd_flag . _chem_comp.name 3-{6-[(3-chlorobenzyl)oxy]naphthalen-2-yl}-1-(propan-2-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB CBE I76 sing 152 n n CBE NBF I76 sing 153 n n CBE CAA I76 sing 154 n n N3 C2 I76 doub 155 n y N3 C4 I76 sing 156 n y C2 N1 I76 sing 157 n y NBF C4 I76 sing 158 n y NBF NAS I76 sing 159 n y C4 C5 I76 doub 160 n y CAI CAK I76 doub 161 n y CAI CAY I76 sing 162 n y N1 C6 I76 doub 163 n y NAS CAZ I76 doub 164 n y C5 C6 I76 sing 165 n y C5 CAZ I76 sing 166 n y C6 NAC I76 sing 167 n n CAK CBA I76 sing 168 n y CAZ CAY I76 sing 169 n n CAY CAO I76 doub 170 n y CBA CAN I76 doub 171 n y CBA CBB I76 sing 172 n y CAN CAW I76 sing 173 n y CAO CBB I76 sing 174 n y CLD CAU I76 sing 175 n n CBB CAJ I76 doub 176 n y CAM CAV I76 doub 177 n y CAM CAU I76 sing 178 n y CAP CAV I76 sing 179 n n CAP OAT I76 sing 180 n n CAW OAT I76 sing 181 n n CAW CAH I76 doub 182 n y CAV CAG I76 sing 183 n y CAU CAF I76 doub 184 n y CAJ CAH I76 sing 185 n y CAG CAE I76 doub 186 n y CAF CAE I76 sing 187 n y CAA H1 I76 sing 188 n n CAA H2 I76 sing 189 n n CAA H3 I76 sing 190 n n CBE H4 I76 sing 191 n n CAB H5 I76 sing 192 n n CAB H6 I76 sing 193 n n CAB H7 I76 sing 194 n n C2 H8 I76 sing 195 n n NAC H9 I76 sing 196 n n NAC H10 I76 sing 197 n n CAO H11 I76 sing 198 n n CAI H12 I76 sing 199 n n CAK H13 I76 sing 200 n n CAN H14 I76 sing 201 n n CAJ H15 I76 sing 202 n n CAH H16 I76 sing 203 n n CAP H17 I76 sing 204 n n CAP H18 I76 sing 205 n n CAM H19 I76 sing 206 n n CAF H20 I76 sing 207 n n CAE H21 I76 sing 208 n n CAG H22 I76 sing 209 n n # _atom_sites.entry_id 3V51 _atom_sites.fract_transf_matrix[1][1] 0.020697 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005124 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I76 A 1 701 701 I76 I76 . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 508 24 HOH HOH . C 3 HOH A 25 509 25 HOH HOH . C 3 HOH A 26 510 26 HOH HOH . C 3 HOH A 27 511 27 HOH HOH . C 3 HOH A 28 512 28 HOH HOH . C 3 HOH A 29 513 29 HOH HOH . C 3 HOH A 30 514 30 HOH HOH . C 3 HOH A 31 515 31 HOH HOH . C 3 HOH A 32 516 32 HOH HOH . C 3 HOH A 33 517 33 HOH HOH . C 3 HOH A 34 518 34 HOH HOH . C 3 HOH A 35 519 35 HOH HOH . C 3 HOH A 36 520 36 HOH HOH . C 3 HOH A 37 521 37 HOH HOH . C 3 HOH A 38 522 38 HOH HOH . C 3 HOH A 39 523 39 HOH HOH . C 3 HOH A 40 524 40 HOH HOH . C 3 HOH A 41 525 41 HOH HOH . C 3 HOH A 42 526 42 HOH HOH . C 3 HOH A 43 527 43 HOH HOH . C 3 HOH A 44 528 44 HOH HOH . C 3 HOH A 45 529 45 HOH HOH . C 3 HOH A 46 530 46 HOH HOH . C 3 HOH A 47 531 47 HOH HOH . C 3 HOH A 48 532 48 HOH HOH . C 3 HOH A 49 533 49 HOH HOH . C 3 HOH A 50 534 50 HOH HOH . C 3 HOH A 51 535 51 HOH HOH . C 3 HOH A 52 536 52 HOH HOH . C 3 HOH A 53 537 53 HOH HOH . C 3 HOH A 54 538 54 HOH HOH . C 3 HOH A 55 539 55 HOH HOH . C 3 HOH A 56 540 56 HOH HOH . C 3 HOH A 57 541 57 HOH HOH . C 3 HOH A 58 542 58 HOH HOH . C 3 HOH A 59 543 59 HOH HOH . C 3 HOH A 60 544 60 HOH HOH . C 3 HOH A 61 545 61 HOH HOH . C 3 HOH A 62 546 62 HOH HOH . C 3 HOH A 63 547 63 HOH HOH . C 3 HOH A 64 548 64 HOH HOH . C 3 HOH A 65 549 65 HOH HOH . C 3 HOH A 66 550 66 HOH HOH . C 3 HOH A 67 551 67 HOH HOH . C 3 HOH A 68 552 68 HOH HOH . C 3 HOH A 69 553 69 HOH HOH . C 3 HOH A 70 554 70 HOH HOH . C 3 HOH A 71 555 71 HOH HOH . C 3 HOH A 72 556 72 HOH HOH . C 3 HOH A 73 557 73 HOH HOH . C 3 HOH A 74 558 74 HOH HOH . C 3 HOH A 75 559 75 HOH HOH . C 3 HOH A 76 560 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA I76 . . . B 2 17.533 17.872 63.304 1 31.75 ? CAA I76 701 A 1 HETATM 2 C CBE I76 . . . B 2 17.516 16.588 62.477 1 31.51 ? CBE I76 701 A 1 HETATM 3 C CAB I76 . . . B 2 17.414 16.915 60.969 1 37.77 ? CAB I76 701 A 1 HETATM 4 N NBF I76 . . . B 2 16.395 15.705 62.879 1 32.07 ? NBF I76 701 A 1 HETATM 5 N NAS I76 . . . B 2 15.247 16.071 63.193 1 30.77 ? NAS I76 701 A 1 HETATM 6 C C4 I76 . . . B 2 16.524 14.388 62.905 1 31.97 ? C4 I76 701 A 1 HETATM 7 N N3 I76 . . . B 2 17.57 13.581 62.65 1 32.79 ? N3 I76 701 A 1 HETATM 8 C C2 I76 . . . B 2 17.431 12.271 62.775 1 31.5 ? C2 I76 701 A 1 HETATM 9 N N1 I76 . . . B 2 16.28 11.715 63.141 1 28.01 ? N1 I76 701 A 1 HETATM 10 C C6 I76 . . . B 2 15.195 12.477 63.418 1 27.2 ? C6 I76 701 A 1 HETATM 11 N NAC I76 . . . B 2 14.069 11.845 63.777 1 26.24 ? NAC I76 701 A 1 HETATM 12 C C5 I76 . . . B 2 15.295 13.87 63.307 1 26.61 ? C5 I76 701 A 1 HETATM 13 C CAZ I76 . . . B 2 14.486 15.01 63.505 1 22.22 ? CAZ I76 701 A 1 HETATM 14 C CAY I76 . . . B 2 13.123 15.023 63.877 1 20.43 ? CAY I76 701 A 1 HETATM 15 C CAO I76 . . . B 2 12.627 14.367 65.003 1 19.58 ? CAO I76 701 A 1 HETATM 16 C CAI I76 . . . B 2 12.215 15.775 63.103 1 17.5 ? CAI I76 701 A 1 HETATM 17 C CAK I76 . . . B 2 10.855 15.813 63.426 1 20.7 ? CAK I76 701 A 1 HETATM 18 C CBA I76 . . . B 2 10.364 15.128 64.522 1 21.24 ? CBA I76 701 A 1 HETATM 19 C CAN I76 . . . B 2 9.016 15.17 64.833 1 20.99 ? CAN I76 701 A 1 HETATM 20 C CBB I76 . . . B 2 11.266 14.412 65.327 1 22.79 ? CBB I76 701 A 1 HETATM 21 C CAJ I76 . . . B 2 10.791 13.728 66.427 1 19.67 ? CAJ I76 701 A 1 HETATM 22 C CAH I76 . . . B 2 9.442 13.765 66.738 1 22.04 ? CAH I76 701 A 1 HETATM 23 C CAW I76 . . . B 2 8.544 14.489 65.943 1 23.93 ? CAW I76 701 A 1 HETATM 24 O OAT I76 . . . B 2 7.23 14.47 66.322 1 26.27 ? OAT I76 701 A 1 HETATM 25 C CAP I76 . . . B 2 6.145 14.877 65.439 1 25.6 ? CAP I76 701 A 1 HETATM 26 C CAV I76 . . . B 2 4.888 15.065 66.069 1 23.27 ? CAV I76 701 A 1 HETATM 27 C CAM I76 . . . B 2 3.824 15.687 65.408 1 21.42 ? CAM I76 701 A 1 HETATM 28 C CAU I76 . . . B 2 2.629 15.88 66.093 1 24.16 ? CAU I76 701 A 1 HETATM 29 CL CLD I76 . . . B 2 1.321 16.641 65.272 1 34.1 ? CLD I76 701 A 1 HETATM 30 C CAF I76 . . . B 2 2.461 15.482 67.41 1 24.95 ? CAF I76 701 A 1 HETATM 31 C CAE I76 . . . B 2 3.526 14.871 68.074 1 24.09 ? CAE I76 701 A 1 HETATM 32 C CAG I76 . . . B 2 4.712 14.68 67.398 1 18.98 ? CAG I76 701 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #