data_3V56 # _model_server_result.job_id VbKyNr6ojYRQYAvV8iiE2g _model_server_result.datetime_utc '2024-12-01 23:14:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v56 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":499}' # _entry.id 3V56 # _exptl.entry_id 3V56 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3V56 _cell.length_a 121.633 _cell.length_b 121.633 _cell.length_c 157.214 _cell.Z_PDB 42 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V56 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,N,P,Q,R 1 1 D,E,F,J,K,L,O,S,T,U 2 1 M 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 N N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 155 A CYS 232 1_555 A SG CYS 168 A CYS 245 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 155 B CYS 232 1_555 B SG CYS 168 B CYS 245 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 C SG CYS 155 C CYS 232 1_555 C SG CYS 168 C CYS 245 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 D SG CYS 155 D CYS 232 1_555 D SG CYS 168 D CYS 245 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 E SG CYS 155 E CYS 232 1_555 E SG CYS 168 E CYS 245 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 F SG CYS 155 F CYS 232 1_555 F SG CYS 168 F CYS 245 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 G SG CYS 2 G CYS 23 1_555 G SG CYS 13 G CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf8 H SG CYS 2 H CYS 23 1_555 H SG CYS 13 H CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 I SG CYS 2 I CYS 23 1_555 I SG CYS 13 I CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf10 J SG CYS 2 J CYS 23 1_555 J SG CYS 13 J CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 K SG CYS 2 K CYS 23 1_555 K SG CYS 13 K CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf12 L SG CYS 2 L CYS 23 1_555 L SG CYS 13 L CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf13 M SG CYS 2 Z CYS 23 1_555 M SG CYS 13 Z CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 G C ACE 1 G ACE 22 1_555 G N CYS 2 G CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 G C CYS 13 G CYS 34 1_555 G N NH2 14 G NH2 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale3 H C CYS 13 H CYS 34 1_555 H N NH2 14 H NH2 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale4 I C CYS 13 I CYS 34 1_555 I N NH2 14 I NH2 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale5 J C CYS 13 J CYS 34 1_555 J N NH2 14 J NH2 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 K C CYS 13 K CYS 34 1_555 K N NH2 14 K NH2 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale7 L C CYS 13 L CYS 34 1_555 L N NH2 14 L NH2 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale8 M C CYS 13 Z CYS 34 1_555 M N NH2 14 Z NH2 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 298 n n S O2 SO4 doub 299 n n S O3 SO4 sing 300 n n S O4 SO4 sing 301 n n # _atom_sites.entry_id 3V56 _atom_sites.fract_transf_matrix[1][1] 0.008221 _atom_sites.fract_transf_matrix[1][2] 0.004747 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006361 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code N 3 SO4 A 1 499 499 SO4 SO4 . O 3 SO4 D 1 499 499 SO4 SO4 . P 4 HOH A 1 500 500 HOH HOH . P 4 HOH A 2 501 501 HOH HOH . P 4 HOH A 3 502 502 HOH HOH . Q 4 HOH B 1 501 501 HOH HOH . Q 4 HOH B 2 502 502 HOH HOH . Q 4 HOH B 3 503 503 HOH HOH . Q 4 HOH B 4 504 504 HOH HOH . R 4 HOH C 1 501 501 HOH HOH . R 4 HOH C 2 502 502 HOH HOH . S 4 HOH D 1 500 500 HOH HOH . S 4 HOH D 2 501 501 HOH HOH . S 4 HOH D 3 502 502 HOH HOH . T 4 HOH E 1 501 501 HOH HOH . T 4 HOH E 2 502 502 HOH HOH . U 4 HOH F 1 501 501 HOH HOH . U 4 HOH F 2 502 502 HOH HOH . U 4 HOH F 3 505 505 HOH HOH . U 4 HOH F 4 506 506 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . N 3 90.17 21.388 -21.167 1 108.57 ? S SO4 499 A 1 HETATM 2 O O1 SO4 . . . N 3 91.649 21.388 -21.294 1 108.48 ? O1 SO4 499 A 1 HETATM 3 O O2 SO4 . . . N 3 89.549 20.437 -22.104 1 105.78 ? O2 SO4 499 A 1 HETATM 4 O O3 SO4 . . . N 3 89.809 21.002 -19.811 1 106.77 ? O3 SO4 499 A 1 HETATM 5 O O4 SO4 . . . N 3 89.637 22.726 -21.438 1 109.98 ? O4 SO4 499 A 1 # _model_server_stats.io_time_ms 113 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #