data_3V5J # _model_server_result.job_id MjHtNYKbkNCN9r5ndS1hOw _model_server_result.datetime_utc '2024-12-22 07:50:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v5j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 3V5J # _exptl.entry_id 3V5J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.33 _cell.angle_gamma 90 _cell.entry_id 3V5J _cell.length_a 146.132 _cell.length_b 69.513 _cell.length_c 68.244 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V5J _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA tetrameric 4 software_defined_assembly 4 PISA tetrameric 4 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 A,B,C,D,E,F,G,H 3 1 A,B,C,D,E,F,G,H 4 1,2 A,B,C,D,E,F,G,H 5 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_456 -x-1,y,-z+1 -1 0 0 0 1 0 0 0 -1 -166.460164 0 65.146061 3 'crystal symmetry operation' 4_446 -x-1/2,y-1/2,-z+1 -1 0 0 0 1 0 0 0 -1 -93.394164 -34.7565 65.146061 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 356 n n S O2 SO4 doub 357 n n S O3 SO4 sing 358 n n S O4 SO4 sing 359 n n # _atom_sites.entry_id 3V5J _atom_sites.fract_transf_matrix[1][1] 0.006843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002135 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014386 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01535 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0F2 A 1 701 2 0F2 0F2 . D 3 SO4 A 1 702 2 SO4 SO4 . E 2 0F2 B 1 701 1 0F2 0F2 . F 3 SO4 B 1 702 1 SO4 SO4 . G 4 HOH A 1 801 10 HOH HOH . G 4 HOH A 2 802 11 HOH HOH . G 4 HOH A 3 803 12 HOH HOH . G 4 HOH A 4 804 14 HOH HOH . G 4 HOH A 5 805 16 HOH HOH . G 4 HOH A 6 806 20 HOH HOH . G 4 HOH A 7 807 21 HOH HOH . G 4 HOH A 8 808 24 HOH HOH . G 4 HOH A 9 809 25 HOH HOH . G 4 HOH A 10 810 26 HOH HOH . G 4 HOH A 11 811 29 HOH HOH . G 4 HOH A 12 812 30 HOH HOH . G 4 HOH A 13 813 35 HOH HOH . G 4 HOH A 14 814 37 HOH HOH . G 4 HOH A 15 815 44 HOH HOH . G 4 HOH A 16 816 45 HOH HOH . G 4 HOH A 17 817 52 HOH HOH . G 4 HOH A 18 818 55 HOH HOH . G 4 HOH A 19 819 56 HOH HOH . G 4 HOH A 20 820 59 HOH HOH . G 4 HOH A 21 821 60 HOH HOH . G 4 HOH A 22 822 63 HOH HOH . G 4 HOH A 23 823 64 HOH HOH . G 4 HOH A 24 824 65 HOH HOH . G 4 HOH A 25 825 67 HOH HOH . G 4 HOH A 26 826 79 HOH HOH . G 4 HOH A 27 827 81 HOH HOH . H 4 HOH B 1 801 5 HOH HOH . H 4 HOH B 2 802 7 HOH HOH . H 4 HOH B 3 803 8 HOH HOH . H 4 HOH B 4 804 9 HOH HOH . H 4 HOH B 5 805 13 HOH HOH . H 4 HOH B 6 806 15 HOH HOH . H 4 HOH B 7 807 17 HOH HOH . H 4 HOH B 8 808 19 HOH HOH . H 4 HOH B 9 809 22 HOH HOH . H 4 HOH B 10 810 32 HOH HOH . H 4 HOH B 11 811 33 HOH HOH . H 4 HOH B 12 812 34 HOH HOH . H 4 HOH B 13 813 39 HOH HOH . H 4 HOH B 14 814 42 HOH HOH . H 4 HOH B 15 815 47 HOH HOH . H 4 HOH B 16 816 49 HOH HOH . H 4 HOH B 17 817 50 HOH HOH . H 4 HOH B 18 818 54 HOH HOH . H 4 HOH B 19 819 61 HOH HOH . H 4 HOH B 20 820 62 HOH HOH . H 4 HOH B 21 821 66 HOH HOH . H 4 HOH B 22 822 69 HOH HOH . H 4 HOH B 23 823 70 HOH HOH . H 4 HOH B 24 824 74 HOH HOH . H 4 HOH B 25 825 76 HOH HOH . H 4 HOH B 26 826 78 HOH HOH . H 4 HOH B 27 827 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 3 -80.574 0.721 39.539 1 104.86 ? S SO4 702 A 1 HETATM 2 O O1 SO4 . . . D 3 -79.688 0.806 38.378 1 109.28 ? O1 SO4 702 A 1 HETATM 3 O O2 SO4 . . . D 3 -81.97 0.799 39.104 1 109.51 ? O2 SO4 702 A 1 HETATM 4 O O3 SO4 . . . D 3 -80.35 -0.552 40.23 1 110.61 ? O3 SO4 702 A 1 HETATM 5 O O4 SO4 . . . D 3 -80.286 1.831 40.449 1 110.07 ? O4 SO4 702 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #