data_3V5P # _model_server_result.job_id '_pphcspVucOhFY4-PcE6XA' _model_server_result.datetime_utc '2024-12-20 22:48:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v5p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3V5P # _exptl.entry_id 3V5P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 352.433 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(4-methoxy-3-methylphenyl)-1-(piperidin-4-ylmethyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.28 _cell.angle_gamma 90 _cell.entry_id 3V5P _cell.length_a 48.16 _cell.length_b 73.51 _cell.length_c 66.77 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V5P _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H24 N6 O' _chem_comp.formula_weight 352.433 _chem_comp.id C88 _chem_comp.mon_nstd_flag . _chem_comp.name 3-(4-methoxy-3-methylphenyl)-1-(piperidin-4-ylmethyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAI NAP C88 sing 70 n n CAI CAK C88 sing 71 n n NAP CAH C88 sing 72 n n CAH CAJ C88 sing 73 n n CAK CAY C88 sing 74 n n CAY CAJ C88 sing 75 n n CAY CAL C88 sing 76 n n CAL NAZ C88 sing 77 n n N3 C2 C88 doub 78 n y N3 C4 C88 sing 79 n y C2 N1 C88 sing 80 n y NAZ C4 C88 sing 81 n y NAZ NAO C88 sing 82 n y C4 C5 C88 doub 83 n y N1 C6 C88 doub 84 n y CAD CAE C88 doub 85 n y CAD CAS C88 sing 86 n y NAO CAV C88 doub 87 n y C5 C6 C88 sing 88 n y C5 CAV C88 sing 89 n y C6 NAC C88 sing 90 n n CAV CAS C88 sing 91 n n CAE CAU C88 sing 92 n y CAS CAG C88 doub 93 n y CAA OAQ C88 sing 94 n n CAU OAQ C88 sing 95 n n CAU CAR C88 doub 96 n y CAG CAR C88 sing 97 n y CAR CAB C88 sing 98 n n CAJ H1 C88 sing 99 n n CAJ H2 C88 sing 100 n n CAH H3 C88 sing 101 n n CAH H4 C88 sing 102 n n NAP H5 C88 sing 103 n n CAI H7 C88 sing 104 n n CAI H8 C88 sing 105 n n CAK H9 C88 sing 106 n n CAK H10 C88 sing 107 n n CAY H11 C88 sing 108 n n CAL H12 C88 sing 109 n n CAL H13 C88 sing 110 n n C2 H14 C88 sing 111 n n NAC H15 C88 sing 112 n n NAC H16 C88 sing 113 n n CAG H17 C88 sing 114 n n CAB H18 C88 sing 115 n n CAB H19 C88 sing 116 n n CAB H20 C88 sing 117 n n CAA H21 C88 sing 118 n n CAA H22 C88 sing 119 n n CAA H23 C88 sing 120 n n CAE H24 C88 sing 121 n n CAD H25 C88 sing 122 n n # _atom_sites.entry_id 3V5P _atom_sites.fract_transf_matrix[1][1] 0.020764 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003766 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015221 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C88 A 1 1 1 C88 C88 . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 14 14 HOH HOH . C 3 HOH A 14 15 15 HOH HOH . C 3 HOH A 15 16 16 HOH HOH . C 3 HOH A 16 17 17 HOH HOH . C 3 HOH A 17 18 18 HOH HOH . C 3 HOH A 18 19 19 HOH HOH . C 3 HOH A 19 20 20 HOH HOH . C 3 HOH A 20 22 22 HOH HOH . C 3 HOH A 21 23 23 HOH HOH . C 3 HOH A 22 508 1 HOH HOH . C 3 HOH A 23 509 24 HOH HOH . C 3 HOH A 24 510 25 HOH HOH . C 3 HOH A 25 511 26 HOH HOH . C 3 HOH A 26 512 27 HOH HOH . C 3 HOH A 27 513 28 HOH HOH . C 3 HOH A 28 514 29 HOH HOH . C 3 HOH A 29 515 30 HOH HOH . C 3 HOH A 30 516 31 HOH HOH . C 3 HOH A 31 517 32 HOH HOH . C 3 HOH A 32 518 33 HOH HOH . C 3 HOH A 33 519 34 HOH HOH . C 3 HOH A 34 520 36 HOH HOH . C 3 HOH A 35 521 37 HOH HOH . C 3 HOH A 36 522 39 HOH HOH . C 3 HOH A 37 523 40 HOH HOH . C 3 HOH A 38 524 41 HOH HOH . C 3 HOH A 39 525 42 HOH HOH . C 3 HOH A 40 526 43 HOH HOH . C 3 HOH A 41 527 44 HOH HOH . C 3 HOH A 42 528 45 HOH HOH . C 3 HOH A 43 529 47 HOH HOH . C 3 HOH A 44 530 48 HOH HOH . C 3 HOH A 45 531 49 HOH HOH . C 3 HOH A 46 532 50 HOH HOH . C 3 HOH A 47 533 51 HOH HOH . C 3 HOH A 48 534 52 HOH HOH . C 3 HOH A 49 535 53 HOH HOH . C 3 HOH A 50 536 54 HOH HOH . C 3 HOH A 51 537 55 HOH HOH . C 3 HOH A 52 538 56 HOH HOH . C 3 HOH A 53 539 57 HOH HOH . C 3 HOH A 54 540 58 HOH HOH . C 3 HOH A 55 541 59 HOH HOH . C 3 HOH A 56 542 60 HOH HOH . C 3 HOH A 57 543 61 HOH HOH . C 3 HOH A 58 544 62 HOH HOH . C 3 HOH A 59 545 63 HOH HOH . C 3 HOH A 60 546 64 HOH HOH . C 3 HOH A 61 547 65 HOH HOH . C 3 HOH A 62 548 66 HOH HOH . C 3 HOH A 63 549 67 HOH HOH . C 3 HOH A 64 550 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAJ C88 . . . B 2 28.817 17.432 29.305 1 42.6 ? CAJ C88 1 A 1 HETATM 2 C CAH C88 . . . B 2 29.339 17.846 27.922 1 42.68 ? CAH C88 1 A 1 HETATM 3 N NAP C88 . . . B 2 28.227 18.428 27.163 1 51.24 ? NAP C88 1 A 1 HETATM 4 C CAI C88 . . . B 2 27.22 17.386 26.892 1 53.82 ? CAI C88 1 A 1 HETATM 5 C CAK C88 . . . B 2 26.614 16.87 28.215 1 45.69 ? CAK C88 1 A 1 HETATM 6 C CAY C88 . . . B 2 27.681 16.391 29.217 1 41.38 ? CAY C88 1 A 1 HETATM 7 C CAL C88 . . . B 2 27.048 16.267 30.613 1 40.28 ? CAL C88 1 A 1 HETATM 8 N NAZ C88 . . . B 2 26.068 15.171 30.845 1 37.51 ? NAZ C88 1 A 1 HETATM 9 N NAO C88 . . . B 2 24.89 15.396 31.145 1 42.15 ? NAO C88 1 A 1 HETATM 10 C C4 C88 . . . B 2 26.331 13.859 30.849 1 38.62 ? C4 C88 1 A 1 HETATM 11 N N3 C88 . . . B 2 27.444 13.132 30.617 1 38.4 ? N3 C88 1 A 1 HETATM 12 C C2 C88 . . . B 2 27.404 11.808 30.671 1 41.67 ? C2 C88 1 A 1 HETATM 13 N N1 C88 . . . B 2 26.283 11.154 30.969 1 43.66 ? N1 C88 1 A 1 HETATM 14 C C6 C88 . . . B 2 25.143 11.816 31.234 1 39.09 ? C6 C88 1 A 1 HETATM 15 N NAC C88 . . . B 2 24.047 11.118 31.528 1 39.27 ? NAC C88 1 A 1 HETATM 16 C C5 C88 . . . B 2 25.14 13.214 31.181 1 35.89 ? C5 C88 1 A 1 HETATM 17 C CAV C88 . . . B 2 24.219 14.255 31.345 1 34.75 ? CAV C88 1 A 1 HETATM 18 C CAS C88 . . . B 2 22.877 14.198 31.733 1 32.53 ? CAS C88 1 A 1 HETATM 19 C CAG C88 . . . B 2 22.512 13.463 32.874 1 37.24 ? CAG C88 1 A 1 HETATM 20 C CAR C88 . . . B 2 21.189 13.451 33.325 1 31.6 ? CAR C88 1 A 1 HETATM 21 C CAB C88 . . . B 2 20.784 12.615 34.533 1 29.48 ? CAB C88 1 A 1 HETATM 22 C CAU C88 . . . B 2 20.224 14.2 32.657 1 31.65 ? CAU C88 1 A 1 HETATM 23 O OAQ C88 . . . B 2 18.957 14.146 33.118 1 32.27 ? OAQ C88 1 A 1 HETATM 24 C CAA C88 . . . B 2 18.001 15.035 32.503 1 34.8 ? CAA C88 1 A 1 HETATM 25 C CAE C88 . . . B 2 20.579 14.961 31.531 1 33.65 ? CAE C88 1 A 1 HETATM 26 C CAD C88 . . . B 2 21.904 14.97 31.089 1 35.12 ? CAD C88 1 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #