data_3V5T # _model_server_result.job_id QtZYl3n9AnF3vGQWCy_Sug _model_server_result.datetime_utc '2024-11-23 07:50:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v5t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":700}' # _entry.id 3V5T # _exptl.entry_id 3V5T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.535 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(2S)-2-(dimethylamino)-3-methylbutyl]-3-(6-ethoxynaphthalen-2-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.36 _cell.angle_gamma 90 _cell.entry_id 3V5T _cell.length_a 48.35 _cell.length_b 72.21 _cell.length_c 67.31 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V5T _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H30 N6 O' _chem_comp.formula_weight 418.535 _chem_comp.id UW9 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(2S)-2-(dimethylamino)-3-methylbutyl]-3-(6-ethoxynaphthalen-2-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CBB UW9 sing 358 n n CBB CAB UW9 sing 359 n n CBB CBC UW9 sing 360 n n CBC NBD UW9 sing 361 n n CBC CAO UW9 sing 362 n n NBD CAE UW9 sing 363 n n NBD CAD UW9 sing 364 n n N3 C2 UW9 doub 365 n y N3 C4 UW9 sing 366 n y C2 N1 UW9 sing 367 n y CAO NBE UW9 sing 368 n n CAH CAJ UW9 doub 369 n y CAH CAU UW9 sing 370 n y C4 NBE UW9 sing 371 n y C4 C5 UW9 doub 372 n y NBE NAR UW9 sing 373 n y N1 C6 UW9 doub 374 n y CAJ CAX UW9 sing 375 n y C5 C6 UW9 sing 376 n y C5 CAW UW9 sing 377 n y C6 NAF UW9 sing 378 n n NAR CAW UW9 doub 379 n y CAW CAU UW9 sing 380 n n CAU CAM UW9 doub 381 n y CAX CAL UW9 doub 382 n y CAX CAY UW9 sing 383 n y CAL CAT UW9 sing 384 n y CAM CAY UW9 sing 385 n y CAN CAA UW9 sing 386 n n CAN OAS UW9 sing 387 n n CAY CAI UW9 doub 388 n y CAT OAS UW9 sing 389 n n CAT CAG UW9 doub 390 n y CAI CAG UW9 sing 391 n y CAB H1 UW9 sing 392 n n CAB H2 UW9 sing 393 n n CAB H3 UW9 sing 394 n n CBB H4 UW9 sing 395 n n CAC H5 UW9 sing 396 n n CAC H6 UW9 sing 397 n n CAC H7 UW9 sing 398 n n CBC H8 UW9 sing 399 n n CAD H10 UW9 sing 400 n n CAD H11 UW9 sing 401 n n CAD H12 UW9 sing 402 n n CAE H13 UW9 sing 403 n n CAE H14 UW9 sing 404 n n CAE H15 UW9 sing 405 n n CAO H16 UW9 sing 406 n n CAO H17 UW9 sing 407 n n C2 H18 UW9 sing 408 n n NAF H19 UW9 sing 409 n n NAF H20 UW9 sing 410 n n CAM H21 UW9 sing 411 n n CAH H22 UW9 sing 412 n n CAJ H23 UW9 sing 413 n n CAL H24 UW9 sing 414 n n CAI H25 UW9 sing 415 n n CAG H26 UW9 sing 416 n n CAN H27 UW9 sing 417 n n CAN H28 UW9 sing 418 n n CAA H29 UW9 sing 419 n n CAA H30 UW9 sing 420 n n CAA H31 UW9 sing 421 n n # _atom_sites.entry_id 3V5T _atom_sites.fract_transf_matrix[1][1] 0.020683 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004912 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013848 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UW9 A 1 700 700 UW9 UW9 . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 508 24 HOH HOH . C 3 HOH A 25 509 25 HOH HOH . C 3 HOH A 26 510 26 HOH HOH . C 3 HOH A 27 511 27 HOH HOH . C 3 HOH A 28 512 28 HOH HOH . C 3 HOH A 29 513 29 HOH HOH . C 3 HOH A 30 514 30 HOH HOH . C 3 HOH A 31 515 31 HOH HOH . C 3 HOH A 32 516 32 HOH HOH . C 3 HOH A 33 517 33 HOH HOH . C 3 HOH A 34 518 34 HOH HOH . C 3 HOH A 35 519 35 HOH HOH . C 3 HOH A 36 520 36 HOH HOH . C 3 HOH A 37 521 37 HOH HOH . C 3 HOH A 38 522 38 HOH HOH . C 3 HOH A 39 523 39 HOH HOH . C 3 HOH A 40 524 40 HOH HOH . C 3 HOH A 41 525 41 HOH HOH . C 3 HOH A 42 526 42 HOH HOH . C 3 HOH A 43 527 43 HOH HOH . C 3 HOH A 44 528 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAB UW9 . . . B 2 21.111 16.965 61.217 1 59.22 ? CAB UW9 700 A 1 HETATM 2 C CBB UW9 . . . B 2 19.703 16.774 60.63 1 60.08 ? CBB UW9 700 A 1 HETATM 3 C CAC UW9 . . . B 2 19.511 15.34 60.129 1 58.75 ? CAC UW9 700 A 1 HETATM 4 C CBC UW9 . . . B 2 18.575 17.138 61.61 1 59.52 ? CBC UW9 700 A 1 HETATM 5 N NBD UW9 . . . B 2 18.46 18.61 61.795 1 62.85 ? NBD UW9 700 A 1 HETATM 6 C CAD UW9 . . . B 2 19.437 19.139 62.762 1 64.23 ? CAD UW9 700 A 1 HETATM 7 C CAE UW9 . . . B 2 17.109 18.944 62.265 1 60.32 ? CAE UW9 700 A 1 HETATM 8 C CAO UW9 . . . B 2 18.704 16.358 62.947 1 55.08 ? CAO UW9 700 A 1 HETATM 9 N NBE UW9 . . . B 2 17.554 15.457 63.168 1 48.62 ? NBE UW9 700 A 1 HETATM 10 N NAR UW9 . . . B 2 16.397 15.835 63.4 1 47.44 ? NAR UW9 700 A 1 HETATM 11 C C4 UW9 . . . B 2 17.653 14.139 63.127 1 46.66 ? C4 UW9 700 A 1 HETATM 12 N N3 UW9 . . . B 2 18.693 13.318 62.903 1 45.67 ? N3 UW9 700 A 1 HETATM 13 C C2 UW9 . . . B 2 18.5 12.015 62.943 1 46.17 ? C2 UW9 700 A 1 HETATM 14 N N1 UW9 . . . B 2 17.291 11.489 63.174 1 46.26 ? N1 UW9 700 A 1 HETATM 15 C C6 UW9 . . . B 2 16.216 12.258 63.398 1 45.65 ? C6 UW9 700 A 1 HETATM 16 N NAF UW9 . . . B 2 15.051 11.661 63.628 1 46.77 ? NAF UW9 700 A 1 HETATM 17 C C5 UW9 . . . B 2 16.375 13.647 63.383 1 45.16 ? C5 UW9 700 A 1 HETATM 18 C CAW UW9 . . . B 2 15.588 14.796 63.559 1 42.74 ? CAW UW9 700 A 1 HETATM 19 C CAU UW9 . . . B 2 14.23 14.841 63.852 1 39.67 ? CAU UW9 700 A 1 HETATM 20 C CAM UW9 . . . B 2 13.711 14.178 64.964 1 39.47 ? CAM UW9 700 A 1 HETATM 21 C CAH UW9 . . . B 2 13.369 15.582 63.064 1 39.55 ? CAH UW9 700 A 1 HETATM 22 C CAJ UW9 . . . B 2 12.004 15.647 63.352 1 38.36 ? CAJ UW9 700 A 1 HETATM 23 C CAX UW9 . . . B 2 11.487 14.97 64.439 1 38.76 ? CAX UW9 700 A 1 HETATM 24 C CAL UW9 . . . B 2 10.144 15.036 64.714 1 38.68 ? CAL UW9 700 A 1 HETATM 25 C CAY UW9 . . . B 2 12.35 14.248 65.268 1 40 ? CAY UW9 700 A 1 HETATM 26 C CAI UW9 . . . B 2 11.838 13.58 66.364 1 38.24 ? CAI UW9 700 A 1 HETATM 27 C CAG UW9 . . . B 2 10.487 13.634 66.638 1 38.65 ? CAG UW9 700 A 1 HETATM 28 C CAT UW9 . . . B 2 9.626 14.355 65.813 1 42.17 ? CAT UW9 700 A 1 HETATM 29 O OAS UW9 . . . B 2 8.277 14.38 66.1 1 41.28 ? OAS UW9 700 A 1 HETATM 30 C CAN UW9 . . . B 2 7.509 15.01 65.053 1 41.2 ? CAN UW9 700 A 1 HETATM 31 C CAA UW9 . . . B 2 6.044 14.559 65.276 1 42.86 ? CAA UW9 700 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #