data_3V5U # _model_server_result.job_id tUh0I26-BKzM0YssrvM4MA _model_server_result.datetime_utc '2024-11-22 23:45:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v5u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":703}' # _entry.id 3V5U # _exptl.entry_id 3V5U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V5U _cell.length_a 49.49 _cell.length_b 72.879 _cell.length_c 96.206 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V5U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 47 A ALA 47 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc2 A OG1 THR 50 A THR 50 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc3 A O THR 50 A THR 50 1_555 C CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc4 A OG SER 51 A SER 51 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc5 A OE1 GLU 54 A GLU 54 1_555 C CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc6 A OE2 GLU 54 A GLU 54 1_555 C CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc7 A OE2 GLU 54 A GLU 54 1_555 D NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc8 A OE2 GLU 54 A GLU 54 1_555 E NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc9 A OG SER 77 A SER 77 1_555 D NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc10 A OD1 ASN 81 A ASN 81 1_555 E NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc11 A O ILE 118 A ILE 118 1_555 F CA CA . A CA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc12 A OD1 ASP 121 A ASP 121 1_555 F CA CA . A CA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc13 A O GLY 122 A GLY 122 1_555 F CA CA . A CA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc14 A OD2 ASP 127 A ASP 127 1_555 F CA CA . A CA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc15 A O ALA 206 A ALA 206 1_555 D NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc16 A O THR 209 A THR 209 1_555 C CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc17 A OG1 THR 209 A THR 209 1_555 D NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc18 A OG SER 210 A SER 210 1_555 D NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc19 A OE2 GLU 213 A GLU 213 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc20 A OE1 GLU 213 A GLU 213 1_555 C CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc21 A OE2 GLU 213 A GLU 213 1_555 C CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc22 A OE2 GLU 213 A GLU 213 1_555 E NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc23 A OG SER 236 A SER 236 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc24 A OD2 ASP 240 A ASP 240 1_555 E NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc25 F CA CA . A CA 705 1_555 K O25 OLC . A OLC 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc26 F CA CA . A CA 705 1_555 Z O HOH . A HOH 849 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3V5U _atom_sites.fract_transf_matrix[1][1] 0.020206 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013721 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 701 1 NA NA . C 3 CA A 1 702 1 CA CA . D 2 NA A 1 703 1 NA NA . E 2 NA A 1 704 1 NA NA . F 3 CA A 1 705 1 CA CA . G 4 ACT A 1 706 1 ACT ACT . H 4 ACT A 1 707 1 ACT ACT . I 4 ACT A 1 708 1 ACT ACT . J 4 ACT A 1 709 1 ACT ACT . K 5 OLC A 1 710 1 OLC MON . L 5 OLC A 1 711 1 OLC MON . M 5 OLC A 1 712 1 OLC MON . N 6 MYS A 1 713 1 MYS FAT . O 6 MYS A 1 714 1 MYS FAT . P 6 MYS A 1 715 1 MYS FAT . Q 7 1PE A 1 716 1 1PE PEG . R 6 MYS A 1 717 1 MYS FAT . S 6 MYS A 1 718 1 MYS FAT . T 6 MYS A 1 719 1 MYS FAT . U 6 MYS A 1 720 1 MYS FAT . V 6 MYS A 1 721 1 MYS FAT . W 6 MYS A 1 722 1 MYS FAT . X 5 OLC A 1 723 1 OLC MON . Y 5 OLC A 1 724 1 OLC MON . Z 8 HOH A 1 801 1 HOH HOH . Z 8 HOH A 2 802 2 HOH HOH . Z 8 HOH A 3 803 3 HOH HOH . Z 8 HOH A 4 804 4 HOH HOH . Z 8 HOH A 5 805 5 HOH HOH . Z 8 HOH A 6 806 6 HOH HOH . Z 8 HOH A 7 807 7 HOH HOH . Z 8 HOH A 8 808 8 HOH HOH . Z 8 HOH A 9 809 9 HOH HOH . Z 8 HOH A 10 810 10 HOH HOH . Z 8 HOH A 11 811 11 HOH HOH . Z 8 HOH A 12 812 12 HOH HOH . Z 8 HOH A 13 813 13 HOH HOH . Z 8 HOH A 14 814 14 HOH HOH . Z 8 HOH A 15 815 15 HOH HOH . Z 8 HOH A 16 816 16 HOH HOH . Z 8 HOH A 17 817 17 HOH HOH . Z 8 HOH A 18 818 18 HOH HOH . Z 8 HOH A 19 819 19 HOH HOH . Z 8 HOH A 20 820 20 HOH HOH . Z 8 HOH A 21 821 21 HOH HOH . Z 8 HOH A 22 822 22 HOH HOH . Z 8 HOH A 23 823 23 HOH HOH . Z 8 HOH A 24 824 24 HOH HOH . Z 8 HOH A 25 825 25 HOH HOH . Z 8 HOH A 26 826 26 HOH HOH . Z 8 HOH A 27 827 27 HOH HOH . Z 8 HOH A 28 828 28 HOH HOH . Z 8 HOH A 29 829 29 HOH HOH . Z 8 HOH A 30 830 30 HOH HOH . Z 8 HOH A 31 831 31 HOH HOH . Z 8 HOH A 32 832 32 HOH HOH . Z 8 HOH A 33 833 33 HOH HOH . Z 8 HOH A 34 834 34 HOH HOH . Z 8 HOH A 35 835 35 HOH HOH . Z 8 HOH A 36 836 36 HOH HOH . Z 8 HOH A 37 837 37 HOH HOH . Z 8 HOH A 38 838 38 HOH HOH . Z 8 HOH A 39 839 39 HOH HOH . Z 8 HOH A 40 840 40 HOH HOH . Z 8 HOH A 41 841 41 HOH HOH . Z 8 HOH A 42 842 42 HOH HOH . Z 8 HOH A 43 843 43 HOH HOH . Z 8 HOH A 44 844 44 HOH HOH . Z 8 HOH A 45 845 45 HOH HOH . Z 8 HOH A 46 846 46 HOH HOH . Z 8 HOH A 47 847 47 HOH HOH . Z 8 HOH A 48 848 48 HOH HOH . Z 8 HOH A 49 849 49 HOH HOH . Z 8 HOH A 50 850 50 HOH HOH . Z 8 HOH A 51 851 51 HOH HOH . Z 8 HOH A 52 852 52 HOH HOH . Z 8 HOH A 53 853 53 HOH HOH . Z 8 HOH A 54 854 54 HOH HOH . Z 8 HOH A 55 855 55 HOH HOH . Z 8 HOH A 56 856 56 HOH HOH . Z 8 HOH A 57 857 57 HOH HOH . Z 8 HOH A 58 858 58 HOH HOH . Z 8 HOH A 59 859 59 HOH HOH . Z 8 HOH A 60 860 60 HOH HOH . Z 8 HOH A 61 861 61 HOH HOH . Z 8 HOH A 62 862 62 HOH HOH . Z 8 HOH A 63 863 63 HOH HOH . Z 8 HOH A 64 864 64 HOH HOH . Z 8 HOH A 65 865 65 HOH HOH . Z 8 HOH A 66 866 66 HOH HOH . Z 8 HOH A 67 867 67 HOH HOH . Z 8 HOH A 68 868 68 HOH HOH . Z 8 HOH A 69 869 69 HOH HOH . Z 8 HOH A 70 870 70 HOH HOH . Z 8 HOH A 71 871 71 HOH HOH . Z 8 HOH A 72 872 72 HOH HOH . Z 8 HOH A 73 873 73 HOH HOH . Z 8 HOH A 74 874 74 HOH HOH . Z 8 HOH A 75 875 75 HOH HOH . Z 8 HOH A 76 876 76 HOH HOH . Z 8 HOH A 77 877 77 HOH HOH . Z 8 HOH A 78 878 78 HOH HOH . Z 8 HOH A 79 879 79 HOH HOH . Z 8 HOH A 80 880 80 HOH HOH . Z 8 HOH A 81 881 81 HOH HOH . Z 8 HOH A 82 882 82 HOH HOH . Z 8 HOH A 83 883 83 HOH HOH . Z 8 HOH A 84 884 84 HOH HOH . Z 8 HOH A 85 885 85 HOH HOH . Z 8 HOH A 86 886 86 HOH HOH . Z 8 HOH A 87 887 87 HOH HOH . Z 8 HOH A 88 888 88 HOH HOH . Z 8 HOH A 89 889 89 HOH HOH . Z 8 HOH A 90 890 90 HOH HOH . Z 8 HOH A 91 891 91 HOH HOH . Z 8 HOH A 92 892 92 HOH HOH . Z 8 HOH A 93 893 93 HOH HOH . Z 8 HOH A 94 894 94 HOH HOH . Z 8 HOH A 95 895 95 HOH HOH . Z 8 HOH A 96 896 96 HOH HOH . Z 8 HOH A 97 897 97 HOH HOH . Z 8 HOH A 98 898 98 HOH HOH . Z 8 HOH A 99 899 99 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.881 _atom_site.Cartn_y 22.789 _atom_site.Cartn_z 25.945 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 703 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #