data_3V61
#
_model_server_result.job_id            9nJVhJH6xKrHnmtobtMIrw 
_model_server_result.datetime_utc      '2025-02-05 18:07:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3v61 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":264}' 
#
_entry.id    3V61 
#
_exptl.entry_id    3V61 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              137.327 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BARIUM ION' 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3V61 
_cell.length_a            140.06 
_cell.length_b            140.06 
_cell.length_c            52.119 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3V61 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        80 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 84 A GLY 98 1_555 B NZ LYS 164 B LYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale2 B SG CYS 22 B CYS 22 1_555 P C3 NEQ . B NEQ 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.687 ? 
covale ? covale3 B SG CYS 81 B CYS 81 1_555 Q C3 NEQ . B NEQ 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.662 ? 
metalc ? metalc1 C BA BA . A BA 2 1_555 A OD2 ASP 68 A ASP 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? 
metalc ? metalc2 C BA BA . A BA 2 1_555 A O ASP 68 A ASP 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.198 ? 
metalc ? metalc3 C BA BA . A BA 2 1_555 R O HOH . A HOH 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? 
metalc ? metalc4 D BA BA . A BA 3 1_555 R O HOH . A HOH 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.344 ? 
metalc ? metalc5 D BA BA . A BA 3 1_555 A OD1 ASP 73 A ASP 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? 
metalc ? metalc6 D BA BA . A BA 3 1_555 R O HOH . A HOH 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.358 ? 
metalc ? metalc7 E BA BA . A BA 4 1_555 A OD2 ASP 68 A ASP 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? 
metalc ? metalc8 F BA BA . A BA 11 1_555 R O HOH . A HOH 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? 
metalc ? metalc9 F BA BA . A BA 11 1_555 S O HOH . B HOH 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.403 ? 
metalc ? metalc10 F BA BA . A BA 11 1_555 S O HOH . B HOH 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.285 ? 
metalc ? metalc11 R O HOH . A HOH 108 1_555 M BA BA . B BA 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? 
metalc ? metalc12 B O GLU 7 B GLU 7 1_555 K BA BA . B BA 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.142 ? 
metalc ? metalc13 B O ASP 21 B ASP 21 1_555 G BA BA . B BA 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.134 ? 
metalc ? metalc14 B O GLU 55 B GLU 55 1_555 J BA BA . B BA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.084 ? 
metalc ? metalc15 B O PHE 57 B PHE 57 1_555 I BA BA . B BA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? 
metalc ? metalc16 B O ARG 80 B ARG 80 1_555 O BA BA . B BA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? 
metalc ? metalc17 B O GLY 82 B GLY 82 1_555 O BA BA . B BA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.297 ? 
metalc ? metalc18 B O THR 85 B THR 85 1_555 K BA BA . B BA 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.103 ? 
metalc ? metalc19 B OD1 ASP 93 B ASP 93 1_555 L BA BA . B BA 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? 
metalc ? metalc20 B OG1 THR 95 B THR 95 1_555 L BA BA . B BA 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.151 ? 
metalc ? metalc21 B O THR 95 B THR 95 1_555 L BA BA . B BA 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.234 ? 
metalc ? metalc22 B OD1 ASP 214 B ASP 214 1_555 G BA BA . B BA 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? 
metalc ? metalc23 B OD2 ASP 240 B ASP 240 1_555 H BA BA . B BA 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.008 ? 
metalc ? metalc24 B O LEU 241 B LEU 241 1_555 H BA BA . B BA 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? 
metalc ? metalc25 G BA BA . B BA 259 1_555 S O HOH . B HOH 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? 
metalc ? metalc26 G BA BA . B BA 259 1_555 S O HOH . B HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? 
metalc ? metalc27 H BA BA . B BA 260 1_555 S O HOH . B HOH 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? 
metalc ? metalc28 H BA BA . B BA 260 1_555 S O HOH . B HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? 
metalc ? metalc29 I BA BA . B BA 261 1_555 S O HOH . B HOH 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.315 ? 
metalc ? metalc30 J BA BA . B BA 262 1_555 S O HOH . B HOH 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.354 ? 
metalc ? metalc31 L BA BA . B BA 264 1_555 S O HOH . B HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? 
metalc ? metalc32 M BA BA . B BA 265 1_555 S O HOH . B HOH 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.344 ? 
metalc ? metalc33 O BA BA . B BA 267 1_555 S O HOH . B HOH 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? 
metalc ? metalc34 O BA BA . B BA 267 1_555 S O HOH . B HOH 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? 
#
_chem_comp.formula           'Ba 2' 
_chem_comp.formula_weight    137.327 
_chem_comp.id                BA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BARIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3V61 
_atom_sites.fract_transf_matrix[1][1]    0.00714 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00714 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019187 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 BA A 1 2 2 BA BA . 
D 3 BA A 1 3 3 BA BA . 
E 3 BA A 1 4 4 BA BA . 
F 3 BA A 1 11 11 BA BA . 
G 3 BA B 1 259 1 BA BA . 
H 3 BA B 1 260 5 BA BA . 
I 3 BA B 1 261 6 BA BA . 
J 3 BA B 1 262 7 BA BA . 
K 3 BA B 1 263 8 BA BA . 
L 3 BA B 1 264 9 BA BA . 
M 3 BA B 1 265 10 BA BA . 
N 3 BA B 1 266 12 BA BA . 
O 3 BA B 1 267 13 BA BA . 
P 4 NEQ B 1 268 1 NEQ NEQ . 
Q 4 NEQ B 1 269 2 NEQ NEQ . 
R 5 HOH A 1 6 6 HOH HOH . 
R 5 HOH A 2 99 11 HOH HOH . 
R 5 HOH A 3 100 16 HOH HOH . 
R 5 HOH A 4 101 17 HOH HOH . 
R 5 HOH A 5 102 24 HOH HOH . 
R 5 HOH A 6 103 26 HOH HOH . 
R 5 HOH A 7 104 27 HOH HOH . 
R 5 HOH A 8 105 28 HOH HOH . 
R 5 HOH A 9 106 29 HOH HOH . 
R 5 HOH A 10 107 30 HOH HOH . 
R 5 HOH A 11 108 33 HOH HOH . 
R 5 HOH A 12 109 35 HOH HOH . 
R 5 HOH A 13 110 61 HOH HOH . 
R 5 HOH A 14 111 62 HOH HOH . 
R 5 HOH A 15 112 68 HOH HOH . 
R 5 HOH A 16 113 71 HOH HOH . 
S 5 HOH B 1 270 1 HOH HOH . 
S 5 HOH B 2 271 2 HOH HOH . 
S 5 HOH B 3 272 3 HOH HOH . 
S 5 HOH B 4 273 4 HOH HOH . 
S 5 HOH B 5 274 5 HOH HOH . 
S 5 HOH B 6 275 7 HOH HOH . 
S 5 HOH B 7 276 8 HOH HOH . 
S 5 HOH B 8 277 9 HOH HOH . 
S 5 HOH B 9 278 10 HOH HOH . 
S 5 HOH B 10 279 12 HOH HOH . 
S 5 HOH B 11 280 13 HOH HOH . 
S 5 HOH B 12 281 14 HOH HOH . 
S 5 HOH B 13 282 15 HOH HOH . 
S 5 HOH B 14 283 18 HOH HOH . 
S 5 HOH B 15 284 19 HOH HOH . 
S 5 HOH B 16 285 20 HOH HOH . 
S 5 HOH B 17 286 21 HOH HOH . 
S 5 HOH B 18 287 22 HOH HOH . 
S 5 HOH B 19 288 23 HOH HOH . 
S 5 HOH B 20 289 25 HOH HOH . 
S 5 HOH B 21 290 31 HOH HOH . 
S 5 HOH B 22 291 32 HOH HOH . 
S 5 HOH B 23 292 34 HOH HOH . 
S 5 HOH B 24 293 36 HOH HOH . 
S 5 HOH B 25 294 37 HOH HOH . 
S 5 HOH B 26 295 38 HOH HOH . 
S 5 HOH B 27 296 39 HOH HOH . 
S 5 HOH B 28 297 40 HOH HOH . 
S 5 HOH B 29 298 41 HOH HOH . 
S 5 HOH B 30 299 42 HOH HOH . 
S 5 HOH B 31 300 43 HOH HOH . 
S 5 HOH B 32 301 44 HOH HOH . 
S 5 HOH B 33 302 45 HOH HOH . 
S 5 HOH B 34 303 46 HOH HOH . 
S 5 HOH B 35 304 47 HOH HOH . 
S 5 HOH B 36 305 48 HOH HOH . 
S 5 HOH B 37 306 49 HOH HOH . 
S 5 HOH B 38 307 50 HOH HOH . 
S 5 HOH B 39 308 51 HOH HOH . 
S 5 HOH B 40 309 52 HOH HOH . 
S 5 HOH B 41 310 53 HOH HOH . 
S 5 HOH B 42 311 54 HOH HOH . 
S 5 HOH B 43 312 55 HOH HOH . 
S 5 HOH B 44 313 56 HOH HOH . 
S 5 HOH B 45 314 57 HOH HOH . 
S 5 HOH B 46 315 58 HOH HOH . 
S 5 HOH B 47 316 59 HOH HOH . 
S 5 HOH B 48 317 60 HOH HOH . 
S 5 HOH B 49 318 63 HOH HOH . 
S 5 HOH B 50 319 64 HOH HOH . 
S 5 HOH B 51 320 65 HOH HOH . 
S 5 HOH B 52 321 66 HOH HOH . 
S 5 HOH B 53 322 67 HOH HOH . 
S 5 HOH B 54 323 69 HOH HOH . 
S 5 HOH B 55 324 70 HOH HOH . 
S 5 HOH B 56 325 72 HOH HOH . 
S 5 HOH B 57 326 73 HOH HOH . 
S 5 HOH B 58 327 74 HOH HOH . 
S 5 HOH B 59 328 75 HOH HOH . 
S 5 HOH B 60 329 76 HOH HOH . 
S 5 HOH B 61 330 77 HOH HOH . 
S 5 HOH B 62 331 78 HOH HOH . 
S 5 HOH B 63 332 79 HOH HOH . 
S 5 HOH B 64 333 80 HOH HOH . 
S 5 HOH B 65 334 81 HOH HOH . 
S 5 HOH B 66 335 82 HOH HOH . 
S 5 HOH B 67 336 83 HOH HOH . 
S 5 HOH B 68 337 84 HOH HOH . 
S 5 HOH B 69 338 85 HOH HOH . 
S 5 HOH B 70 339 86 HOH HOH . 
S 5 HOH B 71 340 87 HOH HOH . 
S 5 HOH B 72 341 88 HOH HOH . 
S 5 HOH B 73 342 89 HOH HOH . 
S 5 HOH B 74 343 90 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           BA 
_atom_site.label_atom_id         BA 
_atom_site.label_comp_id         BA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         L 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -5.092 
_atom_site.Cartn_y               -66.514 
_atom_site.Cartn_z               15.233 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        97.67 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          BA 
_atom_site.auth_comp_id          BA 
_atom_site.auth_seq_id           264 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#