data_3V62 # _model_server_result.job_id XbG11EqTtC0DPPAJGq_qYw _model_server_result.datetime_utc '2025-07-18 14:34:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v62 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":302}' # _entry.id 3V62 # _exptl.entry_id 3V62 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 125.125 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-ETHYLMALEIMIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 135.04 _cell.angle_gamma 90 _cell.entry_id 3V62 _cell.length_a 196.817 _cell.length_b 62.256 _cell.length_c 139.247 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V62 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,O,P 1 1 D,E,F,K,L,M,N,Q,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 12 A LEU 26 1_555 A N MLY 13 A MLY 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C MLY 13 A MLY 27 1_555 A N VAL 14 A VAL 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C PHE 23 A PHE 37 1_555 A N MLY 24 A MLY 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C MLY 24 A MLY 38 1_555 A N ILE 25 A ILE 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 A C ILE 25 A ILE 39 1_555 A N MLY 26 A MLY 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale6 A C MLY 26 A MLY 40 1_555 A N MLY 27 A MLY 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale7 A C MLY 27 A MLY 41 1_555 A N THR 28 A THR 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C ALA 39 A ALA 53 1_555 A N MLY 40 A MLY 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 A C MLY 40 A MLY 54 1_555 A N ARG 41 A ARG 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 A C GLY 43 A GLY 57 1_555 A N MLY 44 A MLY 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 A C MLY 44 A MLY 58 1_555 A N GLU 45 A GLU 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 A C GLY 84 A GLY 98 1_555 B NZ LYS 164 B LYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? covale ? covale13 B SG CYS 22 B CYS 22 1_555 G C3 NEQ . B NEQ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.672 ? covale ? covale14 B SG CYS 81 B CYS 81 1_555 H C3 NEQ . B NEQ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.664 ? covale ? covale15 D C LEU 12 D LEU 26 1_555 D N MLY 13 D MLY 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale16 D C MLY 13 D MLY 27 1_555 D N VAL 14 D VAL 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 D C PHE 23 D PHE 37 1_555 D N MLY 24 D MLY 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale18 D C MLY 24 D MLY 38 1_555 D N ILE 25 D ILE 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale19 D C ILE 25 D ILE 39 1_555 D N MLY 26 D MLY 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale20 D C MLY 26 D MLY 40 1_555 D N MLY 27 D MLY 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale21 D C MLY 27 D MLY 41 1_555 D N THR 28 D THR 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 D C ALA 39 D ALA 53 1_555 D N MLY 40 D MLY 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale23 D C MLY 40 D MLY 54 1_555 D N ARG 41 D ARG 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale24 D C GLY 43 D GLY 57 1_555 D N MLY 44 D MLY 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale25 D C MLY 44 D MLY 58 1_555 D N GLU 45 D GLU 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale26 D C GLY 84 D GLY 98 1_555 E NZ LYS 164 E LYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? covale ? covale27 E SG CYS 22 E CYS 22 1_555 K C3 NEQ . E NEQ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.67 ? covale ? covale28 E SG CYS 81 E CYS 81 1_555 L C3 NEQ . E NEQ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.664 ? # _chem_comp.formula 'C6 H7 N O2' _chem_comp.formula_weight 125.125 _chem_comp.id NEQ _chem_comp.mon_nstd_flag . _chem_comp.name N-ETHYLMALEIMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 NEQ sing 266 n n N1 C4 NEQ sing 267 n n N1 C5 NEQ sing 268 n n O1 C1 NEQ doub 269 n n O2 C4 NEQ doub 270 n n C1 C2 NEQ sing 271 n n C2 C3 NEQ doub 272 n n C2 H21 NEQ sing 273 n n C3 C4 NEQ sing 274 n n C3 H31 NEQ sing 275 n n C5 C6 NEQ sing 276 n n C5 H51 NEQ sing 277 n n C5 H52 NEQ sing 278 n n C6 H61 NEQ sing 279 n n C6 H62 NEQ sing 280 n n C6 H63 NEQ sing 281 n n # _atom_sites.entry_id 3V62 _atom_sites.fract_transf_matrix[1][1] 0.005081 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005088 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010163 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NEQ B 1 301 1 NEQ NEQ . H 4 NEQ B 1 302 2 NEQ NEQ . I 5 SO4 B 1 303 1 SO4 SO4 . J 5 SO4 B 1 304 2 SO4 SO4 . K 4 NEQ E 1 301 3 NEQ NEQ . L 4 NEQ E 1 302 4 NEQ NEQ . M 5 SO4 E 1 303 3 SO4 SO4 . N 5 SO4 E 1 304 4 SO4 SO4 . O 6 HOH A 1 101 41 HOH HOH . O 6 HOH A 2 102 44 HOH HOH . O 6 HOH A 3 103 45 HOH HOH . O 6 HOH A 4 104 48 HOH HOH . O 6 HOH A 5 105 49 HOH HOH . O 6 HOH A 6 106 50 HOH HOH . P 6 HOH B 1 401 1 HOH HOH . P 6 HOH B 2 402 2 HOH HOH . P 6 HOH B 3 403 5 HOH HOH . P 6 HOH B 4 404 6 HOH HOH . P 6 HOH B 5 405 9 HOH HOH . P 6 HOH B 6 406 10 HOH HOH . P 6 HOH B 7 407 11 HOH HOH . P 6 HOH B 8 408 12 HOH HOH . P 6 HOH B 9 409 13 HOH HOH . P 6 HOH B 10 410 25 HOH HOH . P 6 HOH B 11 411 26 HOH HOH . P 6 HOH B 12 412 27 HOH HOH . P 6 HOH B 13 413 29 HOH HOH . P 6 HOH B 14 414 30 HOH HOH . P 6 HOH B 15 415 31 HOH HOH . P 6 HOH B 16 416 32 HOH HOH . P 6 HOH B 17 417 35 HOH HOH . P 6 HOH B 18 418 37 HOH HOH . P 6 HOH B 19 419 38 HOH HOH . P 6 HOH B 20 420 39 HOH HOH . P 6 HOH B 21 421 40 HOH HOH . P 6 HOH B 22 422 42 HOH HOH . P 6 HOH B 23 423 46 HOH HOH . P 6 HOH B 24 424 47 HOH HOH . Q 6 HOH D 1 101 36 HOH HOH . R 6 HOH E 1 401 3 HOH HOH . R 6 HOH E 2 402 4 HOH HOH . R 6 HOH E 3 403 7 HOH HOH . R 6 HOH E 4 404 8 HOH HOH . R 6 HOH E 5 405 14 HOH HOH . R 6 HOH E 6 406 15 HOH HOH . R 6 HOH E 7 407 16 HOH HOH . R 6 HOH E 8 408 17 HOH HOH . R 6 HOH E 9 409 18 HOH HOH . R 6 HOH E 10 410 19 HOH HOH . R 6 HOH E 11 411 21 HOH HOH . R 6 HOH E 12 412 22 HOH HOH . R 6 HOH E 13 413 23 HOH HOH . R 6 HOH E 14 414 24 HOH HOH . R 6 HOH E 15 415 28 HOH HOH . R 6 HOH E 16 416 43 HOH HOH . R 6 HOH E 17 417 51 HOH HOH . R 6 HOH E 18 418 52 HOH HOH . S 6 HOH F 1 1201 33 HOH HOH . S 6 HOH F 2 1202 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NEQ . . . L 4 29.062 31.919 52.115 1 131.19 ? N1 NEQ 302 E 1 HETATM 2 O O1 NEQ . . . L 4 27.182 31.006 51.217 1 128.01 ? O1 NEQ 302 E 1 HETATM 3 O O2 NEQ . . . L 4 30.496 33.376 53.12 1 125.7 ? O2 NEQ 302 E 1 HETATM 4 C C1 NEQ . . . L 4 27.776 31.929 51.762 1 133.34 ? C1 NEQ 302 E 1 HETATM 5 C C2 NEQ . . . L 4 27.104 33.238 52.116 1 132.8 ? C2 NEQ 302 E 1 HETATM 6 C C3 NEQ . . . L 4 28.236 34.043 52.748 1 132.01 ? C3 NEQ 302 E 1 HETATM 7 C C4 NEQ . . . L 4 29.397 33.079 52.688 1 127.73 ? C4 NEQ 302 E 1 HETATM 8 C C5 NEQ . . . L 4 29.959 30.79 51.893 1 126.67 ? C5 NEQ 302 E 1 HETATM 9 C C6 NEQ . . . L 4 30.347 30.716 50.427 1 117.46 ? C6 NEQ 302 E 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 9 #