data_3V64
#
_model_server_result.job_id            M41NTGDzrq86h82rHw1deQ 
_model_server_result.datetime_utc      '2024-12-26 16:03:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3v64 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":2001}' 
#
_entry.id    3V64 
#
_exptl.entry_id    3V64 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3V64 
_cell.length_a            99.46 
_cell.length_b            106.07 
_cell.length_c            112.06 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3V64 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
? 4 L N N 
? 4 N N N 
? 4 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 10 C CYS 405 1_555 A SG CYS 23 C CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
disulf ? disulf2 A SG CYS 25 C CYS 420 1_555 A SG CYS 38 C CYS 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 A SG CYS 307 C CYS 702 1_555 A SG CYS 318 C CYS 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf4 A SG CYS 314 C CYS 709 1_555 A SG CYS 327 C CYS 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf5 A SG CYS 329 C CYS 724 1_555 A SG CYS 341 C CYS 736 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf6 B SG CYS 162 A CYS 1919 1_555 B SG CYS 188 A CYS 1945 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf7 C SG CYS 162 B CYS 1919 1_555 C SG CYS 188 B CYS 1945 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
disulf ? disulf8 D SG CYS 10 D CYS 405 1_555 D SG CYS 23 D CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf9 D SG CYS 25 D CYS 420 1_555 D SG CYS 38 D CYS 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf10 D SG CYS 307 D CYS 702 1_555 D SG CYS 318 D CYS 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf11 D SG CYS 314 D CYS 709 1_555 D SG CYS 327 D CYS 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf12 D SG CYS 329 D CYS 724 1_555 D SG CYS 341 D CYS 736 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
covale ? covale1 A ND2 ASN 103 C ASN 498 1_555 E C1 NAG . C NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? 
metalc ? metalc1 A OH TYR 325 C TYR 720 1_555 G CA CA . C CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? 
metalc ? metalc2 B OD2 ASP 63 A ASP 1820 1_555 J CA CA . A CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? 
metalc ? metalc3 B O LEU 80 A LEU 1837 1_555 J CA CA . A CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc4 B O GLN 130 A GLN 1887 1_555 J CA CA . A CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
metalc ? metalc5 B OD1 ASP 132 A ASP 1889 1_555 J CA CA . A CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? 
metalc ? metalc6 C OD2 ASP 63 B ASP 1820 1_555 L CA CA . B CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? 
metalc ? metalc7 C O LEU 80 B LEU 1837 1_555 L CA CA . B CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? 
metalc ? metalc8 C O GLN 130 B GLN 1887 1_555 L CA CA . B CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? 
metalc ? metalc9 C OD1 ASP 132 B ASP 1889 1_555 L CA CA . B CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.176 ? 
metalc ? metalc10 D O VAL 92 D VAL 487 1_555 O CA CA . D CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? 
metalc ? metalc11 D OD1 ASP 95 D ASP 490 1_555 O CA CA . D CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? 
metalc ? metalc12 D O GLU 116 D GLU 511 1_555 O CA CA . D CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? 
metalc ? metalc13 D O ASN 311 D ASN 706 1_555 N CA CA . D CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc14 N CA CA . D CA 801 1_555 S O HOH . D HOH 927 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3V64 
_atom_sites.fract_transf_matrix[1][1]    0.010054 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009428 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008924 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAG C 1 801 800 NAG NAG . 
F 3 NAG C 1 802 900 NAG NAG . 
G 4 CA C 1 803 5 CA CA . 
H 5 PO4 C 1 804 2 PO4 PO4 . 
I 5 PO4 C 1 805 4 PO4 PO4 . 
J 4 CA A 1 2001 2 CA CA . 
K 5 PO4 A 1 2002 1 PO4 PO4 . 
L 4 CA B 1 2001 1 CA CA . 
M 5 PO4 B 1 2002 3 PO4 PO4 . 
N 4 CA D 1 801 3 CA CA . 
O 4 CA D 1 802 4 CA CA . 
P 6 HOH C 1 901 6 HOH HOH . 
P 6 HOH C 2 902 10 HOH HOH . 
P 6 HOH C 3 903 13 HOH HOH . 
P 6 HOH C 4 904 15 HOH HOH . 
P 6 HOH C 5 905 16 HOH HOH . 
P 6 HOH C 6 906 17 HOH HOH . 
P 6 HOH C 7 907 22 HOH HOH . 
P 6 HOH C 8 908 23 HOH HOH . 
P 6 HOH C 9 909 26 HOH HOH . 
P 6 HOH C 10 910 28 HOH HOH . 
P 6 HOH C 11 911 29 HOH HOH . 
P 6 HOH C 12 912 37 HOH HOH . 
P 6 HOH C 13 913 38 HOH HOH . 
P 6 HOH C 14 914 40 HOH HOH . 
P 6 HOH C 15 915 43 HOH HOH . 
P 6 HOH C 16 916 46 HOH HOH . 
P 6 HOH C 17 917 48 HOH HOH . 
P 6 HOH C 18 918 53 HOH HOH . 
P 6 HOH C 19 919 54 HOH HOH . 
P 6 HOH C 20 920 59 HOH HOH . 
P 6 HOH C 21 921 65 HOH HOH . 
P 6 HOH C 22 922 68 HOH HOH . 
P 6 HOH C 23 923 70 HOH HOH . 
P 6 HOH C 24 924 71 HOH HOH . 
P 6 HOH C 25 925 72 HOH HOH . 
P 6 HOH C 26 926 79 HOH HOH . 
P 6 HOH C 27 927 81 HOH HOH . 
P 6 HOH C 28 928 82 HOH HOH . 
P 6 HOH C 29 929 83 HOH HOH . 
P 6 HOH C 30 930 84 HOH HOH . 
P 6 HOH C 31 931 90 HOH HOH . 
P 6 HOH C 32 932 91 HOH HOH . 
P 6 HOH C 33 933 93 HOH HOH . 
P 6 HOH C 34 934 96 HOH HOH . 
P 6 HOH C 35 935 105 HOH HOH . 
P 6 HOH C 36 936 108 HOH HOH . 
P 6 HOH C 37 937 745 HOH HOH . 
P 6 HOH C 38 938 746 HOH HOH . 
P 6 HOH C 39 939 106 HOH HOH . 
Q 6 HOH A 1 2101 11 HOH HOH . 
Q 6 HOH A 2 2102 21 HOH HOH . 
Q 6 HOH A 3 2103 24 HOH HOH . 
Q 6 HOH A 4 2104 25 HOH HOH . 
Q 6 HOH A 5 2105 31 HOH HOH . 
Q 6 HOH A 6 2106 34 HOH HOH . 
Q 6 HOH A 7 2107 39 HOH HOH . 
Q 6 HOH A 8 2108 41 HOH HOH . 
Q 6 HOH A 9 2109 47 HOH HOH . 
Q 6 HOH A 10 2110 49 HOH HOH . 
Q 6 HOH A 11 2111 51 HOH HOH . 
Q 6 HOH A 12 2112 58 HOH HOH . 
Q 6 HOH A 13 2113 61 HOH HOH . 
Q 6 HOH A 14 2114 64 HOH HOH . 
Q 6 HOH A 15 2115 66 HOH HOH . 
Q 6 HOH A 16 2116 75 HOH HOH . 
Q 6 HOH A 17 2117 76 HOH HOH . 
Q 6 HOH A 18 2118 86 HOH HOH . 
Q 6 HOH A 19 2119 88 HOH HOH . 
Q 6 HOH A 20 2120 92 HOH HOH . 
Q 6 HOH A 21 2121 94 HOH HOH . 
Q 6 HOH A 22 2122 98 HOH HOH . 
Q 6 HOH A 23 2123 103 HOH HOH . 
Q 6 HOH A 24 2124 107 HOH HOH . 
Q 6 HOH A 25 2125 1949 HOH HOH . 
R 6 HOH B 1 2101 19 HOH HOH . 
R 6 HOH B 2 2102 9 HOH HOH . 
R 6 HOH B 3 2103 12 HOH HOH . 
R 6 HOH B 4 2104 14 HOH HOH . 
R 6 HOH B 5 2105 18 HOH HOH . 
R 6 HOH B 6 2106 35 HOH HOH . 
R 6 HOH B 7 2107 42 HOH HOH . 
R 6 HOH B 8 2108 44 HOH HOH . 
R 6 HOH B 9 2109 50 HOH HOH . 
R 6 HOH B 10 2110 67 HOH HOH . 
R 6 HOH B 11 2111 85 HOH HOH . 
R 6 HOH B 12 2112 87 HOH HOH . 
R 6 HOH B 13 2113 89 HOH HOH . 
R 6 HOH B 14 2114 100 HOH HOH . 
R 6 HOH B 15 2115 101 HOH HOH . 
R 6 HOH B 16 2116 104 HOH HOH . 
R 6 HOH B 17 2117 1949 HOH HOH . 
R 6 HOH B 18 2118 1950 HOH HOH . 
S 6 HOH D 1 901 7 HOH HOH . 
S 6 HOH D 2 902 8 HOH HOH . 
S 6 HOH D 3 903 20 HOH HOH . 
S 6 HOH D 4 904 27 HOH HOH . 
S 6 HOH D 5 905 30 HOH HOH . 
S 6 HOH D 6 906 32 HOH HOH . 
S 6 HOH D 7 907 33 HOH HOH . 
S 6 HOH D 8 908 36 HOH HOH . 
S 6 HOH D 9 909 45 HOH HOH . 
S 6 HOH D 10 910 52 HOH HOH . 
S 6 HOH D 11 911 55 HOH HOH . 
S 6 HOH D 12 912 56 HOH HOH . 
S 6 HOH D 13 913 57 HOH HOH . 
S 6 HOH D 14 914 60 HOH HOH . 
S 6 HOH D 15 915 62 HOH HOH . 
S 6 HOH D 16 916 63 HOH HOH . 
S 6 HOH D 17 917 69 HOH HOH . 
S 6 HOH D 18 918 73 HOH HOH . 
S 6 HOH D 19 919 74 HOH HOH . 
S 6 HOH D 20 920 77 HOH HOH . 
S 6 HOH D 21 921 78 HOH HOH . 
S 6 HOH D 22 922 80 HOH HOH . 
S 6 HOH D 23 923 95 HOH HOH . 
S 6 HOH D 24 924 97 HOH HOH . 
S 6 HOH D 25 925 99 HOH HOH . 
S 6 HOH D 26 926 102 HOH HOH . 
S 6 HOH D 27 927 109 HOH HOH . 
S 6 HOH D 28 928 110 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -11.461 
_atom_site.Cartn_y               7.636 
_atom_site.Cartn_z               -28.691 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        50.49 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           2001 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           1 
#