data_3V64 # _model_server_result.job_id nqZMADpjaDT9ff1BSFTHgA _model_server_result.datetime_utc '2024-11-05 00:34:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v64 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":2001}' # _entry.id 3V64 # _exptl.entry_id 3V64 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V64 _cell.length_a 99.46 _cell.length_b 106.07 _cell.length_c 112.06 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V64 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 L N N ? 4 N N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 C CYS 405 1_555 A SG CYS 23 C CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? disulf ? disulf2 A SG CYS 25 C CYS 420 1_555 A SG CYS 38 C CYS 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 307 C CYS 702 1_555 A SG CYS 318 C CYS 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf4 A SG CYS 314 C CYS 709 1_555 A SG CYS 327 C CYS 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 A SG CYS 329 C CYS 724 1_555 A SG CYS 341 C CYS 736 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf6 B SG CYS 162 A CYS 1919 1_555 B SG CYS 188 A CYS 1945 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 C SG CYS 162 B CYS 1919 1_555 C SG CYS 188 B CYS 1945 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf8 D SG CYS 10 D CYS 405 1_555 D SG CYS 23 D CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 D SG CYS 25 D CYS 420 1_555 D SG CYS 38 D CYS 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf10 D SG CYS 307 D CYS 702 1_555 D SG CYS 318 D CYS 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 D SG CYS 314 D CYS 709 1_555 D SG CYS 327 D CYS 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf12 D SG CYS 329 D CYS 724 1_555 D SG CYS 341 D CYS 736 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A ND2 ASN 103 C ASN 498 1_555 E C1 NAG . C NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? metalc ? metalc1 A OH TYR 325 C TYR 720 1_555 G CA CA . C CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? metalc ? metalc2 B OD2 ASP 63 A ASP 1820 1_555 J CA CA . A CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? metalc ? metalc3 B O LEU 80 A LEU 1837 1_555 J CA CA . A CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc4 B O GLN 130 A GLN 1887 1_555 J CA CA . A CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc5 B OD1 ASP 132 A ASP 1889 1_555 J CA CA . A CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? metalc ? metalc6 C OD2 ASP 63 B ASP 1820 1_555 L CA CA . B CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc7 C O LEU 80 B LEU 1837 1_555 L CA CA . B CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc8 C O GLN 130 B GLN 1887 1_555 L CA CA . B CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc9 C OD1 ASP 132 B ASP 1889 1_555 L CA CA . B CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.176 ? metalc ? metalc10 D O VAL 92 D VAL 487 1_555 O CA CA . D CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc11 D OD1 ASP 95 D ASP 490 1_555 O CA CA . D CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc12 D O GLU 116 D GLU 511 1_555 O CA CA . D CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? metalc ? metalc13 D O ASN 311 D ASN 706 1_555 N CA CA . D CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc14 N CA CA . D CA 801 1_555 S O HOH . D HOH 927 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3V64 _atom_sites.fract_transf_matrix[1][1] 0.010054 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009428 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008924 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG C 1 801 800 NAG NAG . F 3 NAG C 1 802 900 NAG NAG . G 4 CA C 1 803 5 CA CA . H 5 PO4 C 1 804 2 PO4 PO4 . I 5 PO4 C 1 805 4 PO4 PO4 . J 4 CA A 1 2001 2 CA CA . K 5 PO4 A 1 2002 1 PO4 PO4 . L 4 CA B 1 2001 1 CA CA . M 5 PO4 B 1 2002 3 PO4 PO4 . N 4 CA D 1 801 3 CA CA . O 4 CA D 1 802 4 CA CA . P 6 HOH C 1 901 6 HOH HOH . P 6 HOH C 2 902 10 HOH HOH . P 6 HOH C 3 903 13 HOH HOH . P 6 HOH C 4 904 15 HOH HOH . P 6 HOH C 5 905 16 HOH HOH . P 6 HOH C 6 906 17 HOH HOH . P 6 HOH C 7 907 22 HOH HOH . P 6 HOH C 8 908 23 HOH HOH . P 6 HOH C 9 909 26 HOH HOH . P 6 HOH C 10 910 28 HOH HOH . P 6 HOH C 11 911 29 HOH HOH . P 6 HOH C 12 912 37 HOH HOH . P 6 HOH C 13 913 38 HOH HOH . P 6 HOH C 14 914 40 HOH HOH . P 6 HOH C 15 915 43 HOH HOH . P 6 HOH C 16 916 46 HOH HOH . P 6 HOH C 17 917 48 HOH HOH . P 6 HOH C 18 918 53 HOH HOH . P 6 HOH C 19 919 54 HOH HOH . P 6 HOH C 20 920 59 HOH HOH . P 6 HOH C 21 921 65 HOH HOH . P 6 HOH C 22 922 68 HOH HOH . P 6 HOH C 23 923 70 HOH HOH . P 6 HOH C 24 924 71 HOH HOH . P 6 HOH C 25 925 72 HOH HOH . P 6 HOH C 26 926 79 HOH HOH . P 6 HOH C 27 927 81 HOH HOH . P 6 HOH C 28 928 82 HOH HOH . P 6 HOH C 29 929 83 HOH HOH . P 6 HOH C 30 930 84 HOH HOH . P 6 HOH C 31 931 90 HOH HOH . P 6 HOH C 32 932 91 HOH HOH . P 6 HOH C 33 933 93 HOH HOH . P 6 HOH C 34 934 96 HOH HOH . P 6 HOH C 35 935 105 HOH HOH . P 6 HOH C 36 936 108 HOH HOH . P 6 HOH C 37 937 745 HOH HOH . P 6 HOH C 38 938 746 HOH HOH . P 6 HOH C 39 939 106 HOH HOH . Q 6 HOH A 1 2101 11 HOH HOH . Q 6 HOH A 2 2102 21 HOH HOH . Q 6 HOH A 3 2103 24 HOH HOH . Q 6 HOH A 4 2104 25 HOH HOH . Q 6 HOH A 5 2105 31 HOH HOH . Q 6 HOH A 6 2106 34 HOH HOH . Q 6 HOH A 7 2107 39 HOH HOH . Q 6 HOH A 8 2108 41 HOH HOH . Q 6 HOH A 9 2109 47 HOH HOH . Q 6 HOH A 10 2110 49 HOH HOH . Q 6 HOH A 11 2111 51 HOH HOH . Q 6 HOH A 12 2112 58 HOH HOH . Q 6 HOH A 13 2113 61 HOH HOH . Q 6 HOH A 14 2114 64 HOH HOH . Q 6 HOH A 15 2115 66 HOH HOH . Q 6 HOH A 16 2116 75 HOH HOH . Q 6 HOH A 17 2117 76 HOH HOH . Q 6 HOH A 18 2118 86 HOH HOH . Q 6 HOH A 19 2119 88 HOH HOH . Q 6 HOH A 20 2120 92 HOH HOH . Q 6 HOH A 21 2121 94 HOH HOH . Q 6 HOH A 22 2122 98 HOH HOH . Q 6 HOH A 23 2123 103 HOH HOH . Q 6 HOH A 24 2124 107 HOH HOH . Q 6 HOH A 25 2125 1949 HOH HOH . R 6 HOH B 1 2101 19 HOH HOH . R 6 HOH B 2 2102 9 HOH HOH . R 6 HOH B 3 2103 12 HOH HOH . R 6 HOH B 4 2104 14 HOH HOH . R 6 HOH B 5 2105 18 HOH HOH . R 6 HOH B 6 2106 35 HOH HOH . R 6 HOH B 7 2107 42 HOH HOH . R 6 HOH B 8 2108 44 HOH HOH . R 6 HOH B 9 2109 50 HOH HOH . R 6 HOH B 10 2110 67 HOH HOH . R 6 HOH B 11 2111 85 HOH HOH . R 6 HOH B 12 2112 87 HOH HOH . R 6 HOH B 13 2113 89 HOH HOH . R 6 HOH B 14 2114 100 HOH HOH . R 6 HOH B 15 2115 101 HOH HOH . R 6 HOH B 16 2116 104 HOH HOH . R 6 HOH B 17 2117 1949 HOH HOH . R 6 HOH B 18 2118 1950 HOH HOH . S 6 HOH D 1 901 7 HOH HOH . S 6 HOH D 2 902 8 HOH HOH . S 6 HOH D 3 903 20 HOH HOH . S 6 HOH D 4 904 27 HOH HOH . S 6 HOH D 5 905 30 HOH HOH . S 6 HOH D 6 906 32 HOH HOH . S 6 HOH D 7 907 33 HOH HOH . S 6 HOH D 8 908 36 HOH HOH . S 6 HOH D 9 909 45 HOH HOH . S 6 HOH D 10 910 52 HOH HOH . S 6 HOH D 11 911 55 HOH HOH . S 6 HOH D 12 912 56 HOH HOH . S 6 HOH D 13 913 57 HOH HOH . S 6 HOH D 14 914 60 HOH HOH . S 6 HOH D 15 915 62 HOH HOH . S 6 HOH D 16 916 63 HOH HOH . S 6 HOH D 17 917 69 HOH HOH . S 6 HOH D 18 918 73 HOH HOH . S 6 HOH D 19 919 74 HOH HOH . S 6 HOH D 20 920 77 HOH HOH . S 6 HOH D 21 921 78 HOH HOH . S 6 HOH D 22 922 80 HOH HOH . S 6 HOH D 23 923 95 HOH HOH . S 6 HOH D 24 924 97 HOH HOH . S 6 HOH D 25 925 99 HOH HOH . S 6 HOH D 26 926 102 HOH HOH . S 6 HOH D 27 927 109 HOH HOH . S 6 HOH D 28 928 110 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x -11.461 _atom_site.Cartn_y 7.636 _atom_site.Cartn_z -28.691 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 2001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 126 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #