data_3V6I
#
_model_server_result.job_id            KAcEVz6AfsA28dsarTo1Gg 
_model_server_result.datetime_utc      '2024-12-22 06:01:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3v6i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":201}' 
#
_entry.id    3V6I 
#
_exptl.entry_id    3V6I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3V6I 
_cell.length_a            102.51 
_cell.length_b            208.69 
_cell.length_c            36.9 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3V6I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,M,N 1 1 
C,D,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 K N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 12 A GLU 13 1_555 E CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? 
metalc ? metalc2 A OE2 GLU 12 A GLU 13 1_555 F CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc3 A OE1 GLU 12 A GLU 13 1_555 F CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? 
metalc ? metalc4 A OE1 GLN 16 A GLN 17 1_555 E CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc5 A OE1 GLU 112 A GLU 113 1_555 G CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc6 E CA CA . A CA 201 1_555 M O HOH . A HOH 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc7 E CA CA . A CA 201 1_555 M O HOH . A HOH 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc8 F CA CA . A CA 202 1_555 M O HOH . A HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc9 G CA CA . A CA 203 1_555 M O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? 
metalc ? metalc10 G CA CA . A CA 203 1_555 M O HOH . A HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? 
metalc ? metalc11 M O HOH . A HOH 333 1_555 L NA NA . Y NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? 
metalc ? metalc12 B OE2 GLU 102 B GLU 117 1_555 I CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc13 B OE1 GLU 102 B GLU 117 1_555 I CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? 
metalc ? metalc14 C OE1 GLU 75 X GLU 90 1_555 K NA NA . X NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc15 C OE1 GLU 78 X GLU 93 1_555 K NA NA . X NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc16 C OE2 GLU 102 X GLU 117 1_555 J NA NA . X NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? 
metalc ? metalc17 C OE1 GLU 102 X GLU 117 1_555 J NA NA . X NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? 
metalc ? metalc18 J NA NA . X NA 201 1_555 O O HOH . X HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc19 K NA NA . X NA 202 1_555 O O HOH . X HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc20 K NA NA . X NA 202 1_555 O O HOH . X HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? 
metalc ? metalc21 D OE2 GLU 21 Y GLU 22 1_555 L NA NA . Y NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc22 D OE1 GLU 21 Y GLU 22 1_555 L NA NA . Y NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
metalc ? metalc23 L NA NA . Y NA 201 1_555 P O HOH . Y HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc24 L NA NA . Y NA 201 1_555 P O HOH . Y HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3V6I 
_atom_sites.fract_transf_matrix[1][1]    0.009755 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004792 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0271 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 CA A 1 201 1 CA CA . 
F 3 CA A 1 202 1 CA CA . 
G 3 CA A 1 203 1 CA CA . 
H 3 CA A 1 204 1 CA CA . 
I 3 CA B 1 201 1 CA CA . 
J 4 NA X 1 201 1 NA NA . 
K 4 NA X 1 202 1 NA NA . 
L 4 NA Y 1 201 1 NA NA . 
M 5 HOH A 1 301 2 HOH HOH . 
M 5 HOH A 2 302 4 HOH HOH . 
M 5 HOH A 3 303 5 HOH HOH . 
M 5 HOH A 4 304 6 HOH HOH . 
M 5 HOH A 5 305 8 HOH HOH . 
M 5 HOH A 6 306 10 HOH HOH . 
M 5 HOH A 7 307 13 HOH HOH . 
M 5 HOH A 8 308 14 HOH HOH . 
M 5 HOH A 9 309 16 HOH HOH . 
M 5 HOH A 10 310 20 HOH HOH . 
M 5 HOH A 11 311 21 HOH HOH . 
M 5 HOH A 12 312 23 HOH HOH . 
M 5 HOH A 13 313 24 HOH HOH . 
M 5 HOH A 14 314 25 HOH HOH . 
M 5 HOH A 15 315 27 HOH HOH . 
M 5 HOH A 16 316 28 HOH HOH . 
M 5 HOH A 17 317 29 HOH HOH . 
M 5 HOH A 18 318 30 HOH HOH . 
M 5 HOH A 19 319 32 HOH HOH . 
M 5 HOH A 20 320 34 HOH HOH . 
M 5 HOH A 21 321 36 HOH HOH . 
M 5 HOH A 22 322 38 HOH HOH . 
M 5 HOH A 23 323 44 HOH HOH . 
M 5 HOH A 24 324 47 HOH HOH . 
M 5 HOH A 25 325 50 HOH HOH . 
M 5 HOH A 26 326 54 HOH HOH . 
M 5 HOH A 27 327 59 HOH HOH . 
M 5 HOH A 28 328 60 HOH HOH . 
M 5 HOH A 29 329 66 HOH HOH . 
M 5 HOH A 30 330 70 HOH HOH . 
M 5 HOH A 31 331 72 HOH HOH . 
M 5 HOH A 32 332 73 HOH HOH . 
M 5 HOH A 33 333 93 HOH HOH . 
M 5 HOH A 34 334 97 HOH HOH . 
M 5 HOH A 35 335 98 HOH HOH . 
M 5 HOH A 36 336 99 HOH HOH . 
M 5 HOH A 37 337 103 HOH HOH . 
M 5 HOH A 38 338 113 HOH HOH . 
M 5 HOH A 39 339 115 HOH HOH . 
M 5 HOH A 40 340 164 HOH HOH . 
M 5 HOH A 41 341 221 HOH HOH . 
M 5 HOH A 42 342 222 HOH HOH . 
M 5 HOH A 43 343 225 HOH HOH . 
M 5 HOH A 44 344 228 HOH HOH . 
N 5 HOH B 1 301 3 HOH HOH . 
N 5 HOH B 2 302 19 HOH HOH . 
N 5 HOH B 3 303 39 HOH HOH . 
N 5 HOH B 4 304 57 HOH HOH . 
N 5 HOH B 5 305 67 HOH HOH . 
N 5 HOH B 6 306 71 HOH HOH . 
N 5 HOH B 7 307 79 HOH HOH . 
N 5 HOH B 8 308 83 HOH HOH . 
N 5 HOH B 9 309 90 HOH HOH . 
N 5 HOH B 10 310 91 HOH HOH . 
N 5 HOH B 11 311 198 HOH HOH . 
N 5 HOH B 12 312 223 HOH HOH . 
N 5 HOH B 13 313 231 HOH HOH . 
O 5 HOH X 1 301 9 HOH HOH . 
O 5 HOH X 2 302 11 HOH HOH . 
O 5 HOH X 3 303 31 HOH HOH . 
O 5 HOH X 4 304 61 HOH HOH . 
O 5 HOH X 5 305 62 HOH HOH . 
O 5 HOH X 6 306 63 HOH HOH . 
O 5 HOH X 7 307 68 HOH HOH . 
O 5 HOH X 8 308 74 HOH HOH . 
O 5 HOH X 9 309 77 HOH HOH . 
O 5 HOH X 10 310 78 HOH HOH . 
O 5 HOH X 11 311 92 HOH HOH . 
O 5 HOH X 12 312 100 HOH HOH . 
O 5 HOH X 13 313 199 HOH HOH . 
O 5 HOH X 14 314 227 HOH HOH . 
O 5 HOH X 15 315 230 HOH HOH . 
O 5 HOH X 16 316 232 HOH HOH . 
P 5 HOH Y 1 301 1 HOH HOH . 
P 5 HOH Y 2 302 7 HOH HOH . 
P 5 HOH Y 3 303 18 HOH HOH . 
P 5 HOH Y 4 304 22 HOH HOH . 
P 5 HOH Y 5 305 33 HOH HOH . 
P 5 HOH Y 6 306 35 HOH HOH . 
P 5 HOH Y 7 307 40 HOH HOH . 
P 5 HOH Y 8 308 46 HOH HOH . 
P 5 HOH Y 9 309 49 HOH HOH . 
P 5 HOH Y 10 310 56 HOH HOH . 
P 5 HOH Y 11 311 69 HOH HOH . 
P 5 HOH Y 12 312 87 HOH HOH . 
P 5 HOH Y 13 313 95 HOH HOH . 
P 5 HOH Y 14 314 118 HOH HOH . 
P 5 HOH Y 15 315 135 HOH HOH . 
P 5 HOH Y 16 316 166 HOH HOH . 
P 5 HOH Y 17 317 168 HOH HOH . 
P 5 HOH Y 18 318 217 HOH HOH . 
P 5 HOH Y 19 319 224 HOH HOH . 
P 5 HOH Y 20 320 229 HOH HOH . 
P 5 HOH Y 21 321 233 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         L 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               24.58 
_atom_site.Cartn_y               74.783 
_atom_site.Cartn_z               27.704 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        13.38 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          Y 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#