data_3V6S # _model_server_result.job_id F8URRAeJ6CraqWqgiS1C7w _model_server_result.datetime_utc '2024-10-25 20:32:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v6s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3V6S # _exptl.entry_id 3V6S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 495.576 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{[4-(dimethylamino)butanoyl]amino}-N-(4-{[4-(pyridin-3-yl)pyrimidin-2-yl]amino}phenyl)benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V6S _cell.length_a 109.491 _cell.length_b 156.262 _cell.length_c 43.884 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V6S _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 116 B CYS 154 1_555 D C33 0F0 . B 0F0 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.772 ? covale ? covale2 A SG CYS 116 A CYS 154 1_555 C C33 0F0 . A 0F0 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? # _chem_comp.formula 'C28 H29 N7 O2' _chem_comp.formula_weight 495.576 _chem_comp.id 0F0 _chem_comp.mon_nstd_flag . _chem_comp.name 3-{[4-(dimethylamino)butanoyl]amino}-N-(4-{[4-(pyridin-3-yl)pyrimidin-2-yl]amino}phenyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3V6S _atom_sites.fract_transf_matrix[1][1] 0.009133 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0064 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0F0 A 1 501 154 0F0 0F0 . D 2 0F0 B 1 501 154 0F0 0F0 . E 3 HOH A 1 601 2 HOH HOH . E 3 HOH A 2 602 4 HOH HOH . E 3 HOH A 3 603 5 HOH HOH . E 3 HOH A 4 604 6 HOH HOH . E 3 HOH A 5 605 7 HOH HOH . E 3 HOH A 6 606 8 HOH HOH . E 3 HOH A 7 607 9 HOH HOH . E 3 HOH A 8 608 10 HOH HOH . E 3 HOH A 9 609 12 HOH HOH . E 3 HOH A 10 610 13 HOH HOH . E 3 HOH A 11 611 15 HOH HOH . E 3 HOH A 12 612 16 HOH HOH . E 3 HOH A 13 613 17 HOH HOH . E 3 HOH A 14 614 18 HOH HOH . E 3 HOH A 15 615 19 HOH HOH . E 3 HOH A 16 616 21 HOH HOH . E 3 HOH A 17 617 23 HOH HOH . E 3 HOH A 18 618 24 HOH HOH . E 3 HOH A 19 619 27 HOH HOH . E 3 HOH A 20 620 28 HOH HOH . E 3 HOH A 21 621 29 HOH HOH . E 3 HOH A 22 622 30 HOH HOH . E 3 HOH A 23 623 32 HOH HOH . E 3 HOH A 24 624 33 HOH HOH . E 3 HOH A 25 625 35 HOH HOH . E 3 HOH A 26 626 36 HOH HOH . E 3 HOH A 27 627 37 HOH HOH . E 3 HOH A 28 628 38 HOH HOH . E 3 HOH A 29 629 42 HOH HOH . E 3 HOH A 30 630 44 HOH HOH . E 3 HOH A 31 631 46 HOH HOH . E 3 HOH A 32 632 56 HOH HOH . E 3 HOH A 33 633 58 HOH HOH . E 3 HOH A 34 634 59 HOH HOH . E 3 HOH A 35 635 62 HOH HOH . E 3 HOH A 36 636 64 HOH HOH . E 3 HOH A 37 637 69 HOH HOH . E 3 HOH A 38 638 72 HOH HOH . E 3 HOH A 39 639 73 HOH HOH . E 3 HOH A 40 640 80 HOH HOH . E 3 HOH A 41 641 84 HOH HOH . E 3 HOH A 42 642 85 HOH HOH . E 3 HOH A 43 643 88 HOH HOH . E 3 HOH A 44 644 91 HOH HOH . E 3 HOH A 45 645 93 HOH HOH . E 3 HOH A 46 646 99 HOH HOH . E 3 HOH A 47 647 100 HOH HOH . E 3 HOH A 48 648 101 HOH HOH . E 3 HOH A 49 649 105 HOH HOH . E 3 HOH A 50 650 108 HOH HOH . E 3 HOH A 51 651 109 HOH HOH . E 3 HOH A 52 652 4 HOH HOH . E 3 HOH A 53 653 5 HOH HOH . E 3 HOH A 54 654 15 HOH HOH . E 3 HOH A 55 655 18 HOH HOH . E 3 HOH A 56 656 21 HOH HOH . E 3 HOH A 57 657 24 HOH HOH . E 3 HOH A 58 658 35 HOH HOH . E 3 HOH A 59 659 38 HOH HOH . E 3 HOH A 60 660 39 HOH HOH . E 3 HOH A 61 661 41 HOH HOH . E 3 HOH A 62 662 47 HOH HOH . E 3 HOH A 63 663 49 HOH HOH . E 3 HOH A 64 664 50 HOH HOH . E 3 HOH A 65 665 53 HOH HOH . E 3 HOH A 66 666 55 HOH HOH . E 3 HOH A 67 667 56 HOH HOH . E 3 HOH A 68 668 60 HOH HOH . E 3 HOH A 69 669 61 HOH HOH . E 3 HOH A 70 670 63 HOH HOH . E 3 HOH A 71 671 64 HOH HOH . E 3 HOH A 72 672 68 HOH HOH . E 3 HOH A 73 673 70 HOH HOH . E 3 HOH A 74 674 71 HOH HOH . E 3 HOH A 75 675 76 HOH HOH . E 3 HOH A 76 676 78 HOH HOH . E 3 HOH A 77 677 83 HOH HOH . E 3 HOH A 78 678 87 HOH HOH . E 3 HOH A 79 679 90 HOH HOH . E 3 HOH A 80 680 91 HOH HOH . E 3 HOH A 81 681 92 HOH HOH . E 3 HOH A 82 682 94 HOH HOH . E 3 HOH A 83 683 95 HOH HOH . E 3 HOH A 84 684 98 HOH HOH . E 3 HOH A 85 685 99 HOH HOH . E 3 HOH A 86 686 100 HOH HOH . E 3 HOH A 87 687 102 HOH HOH . E 3 HOH A 88 688 103 HOH HOH . E 3 HOH A 89 689 106 HOH HOH . E 3 HOH A 90 690 107 HOH HOH . E 3 HOH A 91 691 108 HOH HOH . E 3 HOH A 92 692 111 HOH HOH . E 3 HOH A 93 693 113 HOH HOH . E 3 HOH A 94 694 114 HOH HOH . E 3 HOH A 95 695 118 HOH HOH . E 3 HOH A 96 696 124 HOH HOH . E 3 HOH A 97 697 132 HOH HOH . E 3 HOH A 98 698 133 HOH HOH . E 3 HOH A 99 699 135 HOH HOH . E 3 HOH A 100 700 136 HOH HOH . E 3 HOH A 101 701 137 HOH HOH . E 3 HOH A 102 702 138 HOH HOH . E 3 HOH A 103 703 139 HOH HOH . E 3 HOH A 104 704 142 HOH HOH . E 3 HOH A 105 705 143 HOH HOH . E 3 HOH A 106 706 144 HOH HOH . E 3 HOH A 107 707 147 HOH HOH . E 3 HOH A 108 708 151 HOH HOH . E 3 HOH A 109 709 152 HOH HOH . E 3 HOH A 110 710 40 HOH HOH . E 3 HOH A 111 711 486 HOH HOH . F 3 HOH B 1 601 1 HOH HOH . F 3 HOH B 2 602 2 HOH HOH . F 3 HOH B 3 603 6 HOH HOH . F 3 HOH B 4 604 8 HOH HOH . F 3 HOH B 5 605 9 HOH HOH . F 3 HOH B 6 606 10 HOH HOH . F 3 HOH B 7 607 11 HOH HOH . F 3 HOH B 8 608 13 HOH HOH . F 3 HOH B 9 609 14 HOH HOH . F 3 HOH B 10 610 16 HOH HOH . F 3 HOH B 11 611 17 HOH HOH . F 3 HOH B 12 612 19 HOH HOH . F 3 HOH B 13 613 20 HOH HOH . F 3 HOH B 14 614 25 HOH HOH . F 3 HOH B 15 615 26 HOH HOH . F 3 HOH B 16 616 27 HOH HOH . F 3 HOH B 17 617 30 HOH HOH . F 3 HOH B 18 618 31 HOH HOH . F 3 HOH B 19 619 33 HOH HOH . F 3 HOH B 20 620 34 HOH HOH . F 3 HOH B 21 621 36 HOH HOH . F 3 HOH B 22 622 45 HOH HOH . F 3 HOH B 23 623 51 HOH HOH . F 3 HOH B 24 624 55 HOH HOH . F 3 HOH B 25 625 65 HOH HOH . F 3 HOH B 26 626 66 HOH HOH . F 3 HOH B 27 627 67 HOH HOH . F 3 HOH B 28 628 70 HOH HOH . F 3 HOH B 29 629 77 HOH HOH . F 3 HOH B 30 630 78 HOH HOH . F 3 HOH B 31 631 89 HOH HOH . F 3 HOH B 32 632 96 HOH HOH . F 3 HOH B 33 633 98 HOH HOH . F 3 HOH B 34 634 102 HOH HOH . F 3 HOH B 35 635 104 HOH HOH . F 3 HOH B 36 636 107 HOH HOH . F 3 HOH B 37 637 25 HOH HOH . F 3 HOH B 38 638 26 HOH HOH . F 3 HOH B 39 639 31 HOH HOH . F 3 HOH B 40 640 40 HOH HOH . F 3 HOH B 41 641 42 HOH HOH . F 3 HOH B 42 642 43 HOH HOH . F 3 HOH B 43 643 44 HOH HOH . F 3 HOH B 44 644 45 HOH HOH . F 3 HOH B 45 645 46 HOH HOH . F 3 HOH B 46 646 48 HOH HOH . F 3 HOH B 47 647 51 HOH HOH . F 3 HOH B 48 648 52 HOH HOH . F 3 HOH B 49 649 54 HOH HOH . F 3 HOH B 50 650 57 HOH HOH . F 3 HOH B 51 651 58 HOH HOH . F 3 HOH B 52 652 59 HOH HOH . F 3 HOH B 53 653 62 HOH HOH . F 3 HOH B 54 654 65 HOH HOH . F 3 HOH B 55 655 66 HOH HOH . F 3 HOH B 56 656 67 HOH HOH . F 3 HOH B 57 657 69 HOH HOH . F 3 HOH B 58 658 72 HOH HOH . F 3 HOH B 59 659 73 HOH HOH . F 3 HOH B 60 660 74 HOH HOH . F 3 HOH B 61 661 75 HOH HOH . F 3 HOH B 62 662 79 HOH HOH . F 3 HOH B 63 663 80 HOH HOH . F 3 HOH B 64 664 81 HOH HOH . F 3 HOH B 65 665 82 HOH HOH . F 3 HOH B 66 666 84 HOH HOH . F 3 HOH B 67 667 85 HOH HOH . F 3 HOH B 68 668 86 HOH HOH . F 3 HOH B 69 669 88 HOH HOH . F 3 HOH B 70 670 89 HOH HOH . F 3 HOH B 71 671 93 HOH HOH . F 3 HOH B 72 672 96 HOH HOH . F 3 HOH B 73 673 97 HOH HOH . F 3 HOH B 74 674 101 HOH HOH . F 3 HOH B 75 675 104 HOH HOH . F 3 HOH B 76 676 105 HOH HOH . F 3 HOH B 77 677 109 HOH HOH . F 3 HOH B 78 678 110 HOH HOH . F 3 HOH B 79 679 112 HOH HOH . F 3 HOH B 80 680 115 HOH HOH . F 3 HOH B 81 681 116 HOH HOH . F 3 HOH B 82 682 117 HOH HOH . F 3 HOH B 83 683 119 HOH HOH . F 3 HOH B 84 684 120 HOH HOH . F 3 HOH B 85 685 121 HOH HOH . F 3 HOH B 86 686 122 HOH HOH . F 3 HOH B 87 687 123 HOH HOH . F 3 HOH B 88 688 125 HOH HOH . F 3 HOH B 89 689 126 HOH HOH . F 3 HOH B 90 690 127 HOH HOH . F 3 HOH B 91 691 128 HOH HOH . F 3 HOH B 92 692 129 HOH HOH . F 3 HOH B 93 693 130 HOH HOH . F 3 HOH B 94 694 131 HOH HOH . F 3 HOH B 95 695 134 HOH HOH . F 3 HOH B 96 696 140 HOH HOH . F 3 HOH B 97 697 141 HOH HOH . F 3 HOH B 98 698 145 HOH HOH . F 3 HOH B 99 699 146 HOH HOH . F 3 HOH B 100 700 148 HOH HOH . F 3 HOH B 101 701 149 HOH HOH . F 3 HOH B 102 702 150 HOH HOH . F 3 HOH B 103 703 153 HOH HOH . F 3 HOH B 104 704 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 0F0 . . . C 2 20.729 -17.62 -27.164 1 29.64 ? C01 0F0 501 A 1 HETATM 2 N N02 0F0 . . . C 2 20.295 -18.888 -27.096 1 49.03 ? N02 0F0 501 A 1 HETATM 3 C C03 0F0 . . . C 2 19.115 -19.142 -26.537 1 19.49 ? C03 0F0 501 A 1 HETATM 4 C C04 0F0 . . . C 2 18.337 -18.093 -26.026 1 38.78 ? C04 0F0 501 A 1 HETATM 5 C C05 0F0 . . . C 2 18.762 -16.763 -26.09 1 3.74 ? C05 0F0 501 A 1 HETATM 6 C C06 0F0 . . . C 2 19.991 -16.53 -26.68 1 81.17 ? C06 0F0 501 A 1 HETATM 7 C C07 0F0 . . . C 2 20.549 -15.155 -26.728 1 19.73 ? C07 0F0 501 A 1 HETATM 8 N N08 0F0 . . . C 2 21.754 -14.948 -27.305 1 70.54 ? N08 0F0 501 A 1 HETATM 9 C C09 0F0 . . . C 2 19.896 -14.094 -26.12 1 6.78 ? C09 0F0 501 A 1 HETATM 10 C C10 0F0 . . . C 2 20.514 -12.843 -26.159 1 147.47 ? C10 0F0 501 A 1 HETATM 11 N N11 0F0 . . . C 2 21.7 -12.682 -26.773 1 70.26 ? N11 0F0 501 A 1 HETATM 12 C C12 0F0 . . . C 2 22.358 -13.735 -27.322 1 8.55 ? C12 0F0 501 A 1 HETATM 13 N N13 0F0 . . . C 2 23.62 -13.526 -27.942 1 144.04 ? N13 0F0 501 A 1 HETATM 14 C C14 0F0 . . . C 2 24.347 -14.717 -28.264 1 16.23 ? C14 0F0 501 A 1 HETATM 15 C C15 0F0 . . . C 2 25.493 -14.724 -29.073 1 20.57 ? C15 0F0 501 A 1 HETATM 16 C C16 0F0 . . . C 2 26.175 -15.931 -29.351 1 5.79 ? C16 0F0 501 A 1 HETATM 17 C C17 0F0 . . . C 2 23.956 -15.942 -27.7 1 13.3 ? C17 0F0 501 A 1 HETATM 18 C C18 0F0 . . . C 2 24.604 -17.136 -27.985 1 14.49 ? C18 0F0 501 A 1 HETATM 19 C C19 0F0 . . . C 2 25.695 -17.145 -28.838 1 119.72 ? C19 0F0 501 A 1 HETATM 20 N N20 0F0 . . . C 2 26.357 -18.38 -28.97 1 39.83 ? N20 0F0 501 A 1 HETATM 21 C C21 0F0 . . . C 2 27.073 -18.587 -30.115 1 122.33 ? C21 0F0 501 A 1 HETATM 22 O O22 0F0 . . . C 2 26.762 -18.089 -31.186 1 226.58 ? O22 0F0 501 A 1 HETATM 23 C C23 0F0 . . . C 2 28.243 -19.51 -29.994 1 5.88 ? C23 0F0 501 A 1 HETATM 24 C C24 0F0 . . . C 2 29.463 -19.184 -30.589 1 61.39 ? C24 0F0 501 A 1 HETATM 25 C C25 0F0 . . . C 2 30.569 -20.018 -30.441 1 83.96 ? C25 0F0 501 A 1 HETATM 26 C C26 0F0 . . . C 2 30.426 -21.205 -29.726 1 13.36 ? C26 0F0 501 A 1 HETATM 27 C C27 0F0 . . . C 2 29.216 -21.529 -29.091 1 24.88 ? C27 0F0 501 A 1 HETATM 28 C C28 0F0 . . . C 2 28.131 -20.667 -29.229 1 292.03 ? C28 0F0 501 A 1 HETATM 29 N N29 0F0 . . . C 2 28.996 -22.716 -28.338 1 62.43 ? N29 0F0 501 A 1 HETATM 30 C C30 0F0 . . . C 2 30.046 -23.324 -27.692 1 15.93 ? C30 0F0 501 A 1 HETATM 31 O O31 0F0 . . . C 2 31.223 -23.037 -27.899 1 98.55 ? O31 0F0 501 A 1 HETATM 32 C C32 0F0 . . . C 2 29.663 -24.387 -26.696 1 97.12 ? C32 0F0 501 A 1 HETATM 33 C C33 0F0 . . . C 2 30.833 -24.707 -25.785 1 43.36 ? C33 0F0 501 A 1 HETATM 34 C C34 0F0 . . . C 2 30.435 -25.903 -24.933 1 293.09 ? C34 0F0 501 A 1 HETATM 35 N N35 0F0 . . . C 2 31.162 -25.901 -23.657 1 50.53 ? N35 0F0 501 A 1 HETATM 36 C C36 0F0 . . . C 2 30.194 -26.029 -22.563 1 62.68 ? C36 0F0 501 A 1 HETATM 37 C C37 0F0 . . . C 2 32.145 -26.986 -23.624 1 37.43 ? C37 0F0 501 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 37 #