data_3V78 # _model_server_result.job_id 0fafPyI6kdai9It2rjUNdg _model_server_result.datetime_utc '2024-10-14 16:19:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 3V78 # _exptl.entry_id 3V78 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.404 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ETHIDIUM _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3V78 _cell.length_a 99.098 _cell.length_b 99.098 _cell.length_c 66.478 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H20 N3 1' _chem_comp.formula_weight 314.404 _chem_comp.id ET _chem_comp.mon_nstd_flag . _chem_comp.name ETHIDIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ET doub 70 n y C1 C13 ET sing 71 n y C1 H1 ET sing 72 n n C2 C3 ET sing 73 n y C2 H2 ET sing 74 n n C3 C4 ET doub 75 n y C3 N23 ET sing 76 n n C4 C14 ET sing 77 n y C4 H4 ET sing 78 n n N5 C6 ET doub 79 n y N5 C14 ET sing 80 n y N5 C21 ET sing 81 n n C6 C11 ET sing 82 n y C6 C15 ET sing 83 n y C7 C8 ET doub 84 n y C7 C11 ET sing 85 n y C7 H7 ET sing 86 n n C8 C9 ET sing 87 n y C8 N24 ET sing 88 n n C9 C10 ET doub 89 n y C9 H9 ET sing 90 n n C10 C12 ET sing 91 n y C10 H10 ET sing 92 n n C11 C12 ET doub 93 n y C12 C13 ET sing 94 n y C13 C14 ET doub 95 n y C15 C16 ET doub 96 n y C15 C20 ET sing 97 n y C16 C17 ET sing 98 n y C16 H16 ET sing 99 n n C17 C18 ET doub 100 n y C17 H17 ET sing 101 n n C18 C19 ET sing 102 n y C18 H18 ET sing 103 n n C19 C20 ET doub 104 n y C19 H19 ET sing 105 n n C20 H20 ET sing 106 n n C21 C22 ET sing 107 n n C21 H211 ET sing 108 n n C21 H212 ET sing 109 n n C22 H221 ET sing 110 n n C22 H222 ET sing 111 n n C22 H223 ET sing 112 n n N23 H231 ET sing 113 n n N23 H232 ET sing 114 n n N24 H241 ET sing 115 n n N24 H242 ET sing 116 n n # _atom_sites.entry_id 3V78 _atom_sites.fract_transf_matrix[1][1] 0.010091 _atom_sites.fract_transf_matrix[1][2] 0.005826 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011652 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015043 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ET A 1 301 195 ET ET . D 2 ET B 1 301 195 ET ET . E 3 HOH A 1 401 1 HOH HOH . E 3 HOH A 2 402 3 HOH HOH . E 3 HOH A 3 403 6 HOH HOH . E 3 HOH A 4 404 7 HOH HOH . E 3 HOH A 5 405 8 HOH HOH . E 3 HOH A 6 406 9 HOH HOH . E 3 HOH A 7 407 12 HOH HOH . E 3 HOH A 8 408 13 HOH HOH . E 3 HOH A 9 409 16 HOH HOH . E 3 HOH A 10 410 18 HOH HOH . E 3 HOH A 11 411 21 HOH HOH . E 3 HOH A 12 412 23 HOH HOH . E 3 HOH A 13 413 24 HOH HOH . E 3 HOH A 14 414 26 HOH HOH . E 3 HOH A 15 415 32 HOH HOH . E 3 HOH A 16 416 33 HOH HOH . E 3 HOH A 17 417 34 HOH HOH . E 3 HOH A 18 418 36 HOH HOH . E 3 HOH A 19 419 38 HOH HOH . E 3 HOH A 20 420 48 HOH HOH . E 3 HOH A 21 421 49 HOH HOH . E 3 HOH A 22 422 50 HOH HOH . E 3 HOH A 23 423 53 HOH HOH . E 3 HOH A 24 424 54 HOH HOH . E 3 HOH A 25 425 56 HOH HOH . E 3 HOH A 26 426 61 HOH HOH . E 3 HOH A 27 427 68 HOH HOH . E 3 HOH A 28 428 69 HOH HOH . E 3 HOH A 29 429 73 HOH HOH . E 3 HOH A 30 430 79 HOH HOH . E 3 HOH A 31 431 90 HOH HOH . E 3 HOH A 32 432 101 HOH HOH . E 3 HOH A 33 433 102 HOH HOH . E 3 HOH A 34 434 103 HOH HOH . E 3 HOH A 35 435 105 HOH HOH . E 3 HOH A 36 436 106 HOH HOH . E 3 HOH A 37 437 107 HOH HOH . E 3 HOH A 38 438 109 HOH HOH . E 3 HOH A 39 439 115 HOH HOH . F 3 HOH B 1 401 5 HOH HOH . F 3 HOH B 2 402 14 HOH HOH . F 3 HOH B 3 403 15 HOH HOH . F 3 HOH B 4 404 17 HOH HOH . F 3 HOH B 5 405 19 HOH HOH . F 3 HOH B 6 406 20 HOH HOH . F 3 HOH B 7 407 22 HOH HOH . F 3 HOH B 8 408 30 HOH HOH . F 3 HOH B 9 409 31 HOH HOH . F 3 HOH B 10 410 42 HOH HOH . F 3 HOH B 11 411 45 HOH HOH . F 3 HOH B 12 412 46 HOH HOH . F 3 HOH B 13 413 47 HOH HOH . F 3 HOH B 14 414 55 HOH HOH . F 3 HOH B 15 415 60 HOH HOH . F 3 HOH B 16 416 63 HOH HOH . F 3 HOH B 17 417 65 HOH HOH . F 3 HOH B 18 418 66 HOH HOH . F 3 HOH B 19 419 77 HOH HOH . F 3 HOH B 20 420 104 HOH HOH . F 3 HOH B 21 421 108 HOH HOH . F 3 HOH B 22 422 110 HOH HOH . F 3 HOH B 23 423 111 HOH HOH . F 3 HOH B 24 424 113 HOH HOH . F 3 HOH B 25 425 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ET . . . C 2 -31.384 -13.577 -0.969 1 39.98 ? C1 ET 301 A 1 HETATM 2 C C2 ET . . . C 2 -32.158 -14.7 -0.682 1 47.87 ? C2 ET 301 A 1 HETATM 3 C C3 ET . . . C 2 -33.287 -14.594 0.141 1 44.56 ? C3 ET 301 A 1 HETATM 4 C C4 ET . . . C 2 -33.644 -13.361 0.686 1 32.73 ? C4 ET 301 A 1 HETATM 5 N N5 ET . . . C 2 -33.193 -10.976 0.945 1 37.13 ? N5 ET 301 A 1 HETATM 6 C C6 ET . . . C 2 -32.46 -9.868 0.7 1 42.37 ? C6 ET 301 A 1 HETATM 7 C C7 ET . . . C 2 -30.55 -8.753 -0.405 1 30.26 ? C7 ET 301 A 1 HETATM 8 C C8 ET . . . C 2 -29.414 -8.796 -1.22 1 36.63 ? C8 ET 301 A 1 HETATM 9 C C9 ET . . . C 2 -29.015 -10.02 -1.792 1 28.71 ? C9 ET 301 A 1 HETATM 10 C C10 ET . . . C 2 -29.757 -11.179 -1.544 1 35.46 ? C10 ET 301 A 1 HETATM 11 C C11 ET . . . C 2 -31.301 -9.934 -0.153 1 39.69 ? C11 ET 301 A 1 HETATM 12 C C12 ET . . . C 2 -30.911 -11.132 -0.717 1 42.87 ? C12 ET 301 A 1 HETATM 13 C C13 ET . . . C 2 -31.735 -12.319 -0.414 1 43.81 ? C13 ET 301 A 1 HETATM 14 C C14 ET . . . C 2 -32.843 -12.209 0.399 1 40.59 ? C14 ET 301 A 1 HETATM 15 C C15 ET . . . C 2 -32.879 -8.547 1.241 1 46.93 ? C15 ET 301 A 1 HETATM 16 C C16 ET . . . C 2 -34.007 -7.997 0.622 1 39.46 ? C16 ET 301 A 1 HETATM 17 C C17 ET . . . C 2 -34.497 -6.753 1.021 1 38.85 ? C17 ET 301 A 1 HETATM 18 C C18 ET . . . C 2 -33.843 -6.057 2.036 1 24.07 ? C18 ET 301 A 1 HETATM 19 C C19 ET . . . C 2 -32.699 -6.614 2.618 1 30.81 ? C19 ET 301 A 1 HETATM 20 C C20 ET . . . C 2 -32.204 -7.853 2.241 1 30.89 ? C20 ET 301 A 1 HETATM 21 C C21 ET . . . C 2 -34.357 -10.885 1.788 1 30.05 ? C21 ET 301 A 1 HETATM 22 C C22 ET . . . C 2 -35.711 -10.862 1.163 1 22.71 ? C22 ET 301 A 1 HETATM 23 N N23 ET . . . C 2 -34.065 -15.767 0.414 1 41.38 ? N23 ET 301 A 1 HETATM 24 N N24 ET . . . C 2 -28.664 -7.592 -1.458 1 37.33 ? N24 ET 301 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 24 #