data_3V7M # _model_server_result.job_id whuZP5x8_hmXvjnFmI_5Tw _model_server_result.datetime_utc '2024-11-28 06:31:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v7m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":514}' # _entry.id 3V7M # _exptl.entry_id 3V7M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V7M _cell.length_a 50.22 _cell.length_b 147.75 _cell.length_c 75.54 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 37.77 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN MAN C1 O1 . O6 HO6 . sing 4 ? 2 5 4 NAG MAN C1 O1 . O2 HO2 . sing 5 ? 2 6 5 GAL NAG C1 O1 . O4 HO4 . sing 6 ? 2 7 3 MAN MAN C1 O1 . O3 HO3 . sing 7 ? 2 8 7 NAG MAN C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 802 NAG 2 n B NAG 2 B 2 NAG A 803 NAG 2 n B MAN 3 B 3 MAN A 804 MAN 2 n B MAN 4 B 4 MAN A 805 MAN 2 n B NAG 5 B 5 NAG A 806 NAG 2 n B GAL 6 B 6 GAL A 807 GAL 2 n B MAN 7 B 7 MAN A 808 MAN 2 n B NAG 8 B 8 NAG A 809 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 261 1_555 A SG CYS 86 A CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 A SG CYS 132 A CYS 367 1_555 A SG CYS 190 A CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? covale ? covale1 A ND2 ASN 62 A ASN 297 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale3 B O4 NAG . B NAG 2 1_555 B C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale4 B O6 MAN . B MAN 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale5 B O3 MAN . B MAN 3 1_555 B C1 MAN . B MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale6 B O2 MAN . B MAN 4 1_555 B C1 NAG . B NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale7 B O4 NAG . B NAG 5 1_555 B C1 GAL . B GAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale8 B O2 MAN . B MAN 7 1_555 B C1 NAG . B NAG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? metalc ? metalc1 A ND1 HIS 50 A HIS 285 1_555 D ZN ZN . A ZN 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc2 A NE2 HIS 75 A HIS 310 1_555 C ZN ZN . A ZN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc3 A ND1 HIS 198 A HIS 433 1_555 E ZN ZN . A ZN 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.718 ? metalc ? metalc4 A NE2 HIS 200 A HIS 435 1_555 C ZN ZN . A ZN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc5 C ZN ZN . A ZN 509 1_555 G N1 IMD . A IMD 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc6 C ZN ZN . A ZN 509 1_555 H N3 IMD . A IMD 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc7 D ZN ZN . A ZN 510 1_555 F N3 IMD . A IMD 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.694 ? metalc ? metalc8 E ZN ZN . A ZN 511 1_555 J O HOH . A HOH 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 210 n y N1 C5 IMD sing 211 n y N1 HN1 IMD sing 212 n n C2 N3 IMD doub 213 n y C2 H2 IMD sing 214 n n N3 C4 IMD sing 215 n y N3 HN3 IMD sing 216 n n C4 C5 IMD doub 217 n y C4 H4 IMD sing 218 n n C5 H5 IMD sing 219 n n # _atom_sites.entry_id 3V7M _atom_sites.fract_transf_matrix[1][1] 0.019912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006768 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 509 1001 ZN ZN . D 3 ZN A 1 510 1002 ZN ZN . E 3 ZN A 1 511 1003 ZN ZN . F 4 IMD A 1 512 2001 IMD IMD . G 4 IMD A 1 513 2002 IMD IMD . H 4 IMD A 1 514 2003 IMD IMD . I 5 GOL A 1 515 1 GOL GOL . J 6 HOH A 1 601 2 HOH HOH . J 6 HOH A 2 602 3 HOH HOH . J 6 HOH A 3 603 4 HOH HOH . J 6 HOH A 4 604 5 HOH HOH . J 6 HOH A 5 605 6 HOH HOH . J 6 HOH A 6 606 7 HOH HOH . J 6 HOH A 7 607 8 HOH HOH . J 6 HOH A 8 608 9 HOH HOH . J 6 HOH A 9 609 10 HOH HOH . J 6 HOH A 10 610 11 HOH HOH . J 6 HOH A 11 611 12 HOH HOH . J 6 HOH A 12 612 13 HOH HOH . J 6 HOH A 13 613 14 HOH HOH . J 6 HOH A 14 614 15 HOH HOH . J 6 HOH A 15 615 16 HOH HOH . J 6 HOH A 16 616 17 HOH HOH . J 6 HOH A 17 617 18 HOH HOH . J 6 HOH A 18 618 19 HOH HOH . J 6 HOH A 19 619 20 HOH HOH . J 6 HOH A 20 620 21 HOH HOH . J 6 HOH A 21 621 22 HOH HOH . J 6 HOH A 22 622 23 HOH HOH . J 6 HOH A 23 623 24 HOH HOH . J 6 HOH A 24 624 25 HOH HOH . J 6 HOH A 25 625 26 HOH HOH . J 6 HOH A 26 626 27 HOH HOH . J 6 HOH A 27 627 28 HOH HOH . J 6 HOH A 28 628 29 HOH HOH . J 6 HOH A 29 629 30 HOH HOH . J 6 HOH A 30 630 31 HOH HOH . J 6 HOH A 31 631 32 HOH HOH . J 6 HOH A 32 632 33 HOH HOH . J 6 HOH A 33 633 34 HOH HOH . J 6 HOH A 34 634 35 HOH HOH . J 6 HOH A 35 635 36 HOH HOH . J 6 HOH A 36 636 37 HOH HOH . J 6 HOH A 37 637 38 HOH HOH . J 6 HOH A 38 638 39 HOH HOH . J 6 HOH A 39 639 40 HOH HOH . J 6 HOH A 40 640 41 HOH HOH . J 6 HOH A 41 641 42 HOH HOH . J 6 HOH A 42 642 43 HOH HOH . J 6 HOH A 43 643 44 HOH HOH . J 6 HOH A 44 644 45 HOH HOH . J 6 HOH A 45 645 46 HOH HOH . J 6 HOH A 46 646 47 HOH HOH . J 6 HOH A 47 647 48 HOH HOH . J 6 HOH A 48 648 49 HOH HOH . J 6 HOH A 49 649 50 HOH HOH . J 6 HOH A 50 650 51 HOH HOH . J 6 HOH A 51 651 52 HOH HOH . J 6 HOH A 52 652 53 HOH HOH . J 6 HOH A 53 653 54 HOH HOH . J 6 HOH A 54 654 55 HOH HOH . J 6 HOH A 55 655 56 HOH HOH . J 6 HOH A 56 656 57 HOH HOH . J 6 HOH A 57 657 58 HOH HOH . J 6 HOH A 58 658 59 HOH HOH . J 6 HOH A 59 659 60 HOH HOH . J 6 HOH A 60 660 61 HOH HOH . J 6 HOH A 61 661 62 HOH HOH . J 6 HOH A 62 662 63 HOH HOH . J 6 HOH A 63 663 64 HOH HOH . J 6 HOH A 64 664 65 HOH HOH . J 6 HOH A 65 665 66 HOH HOH . J 6 HOH A 66 666 67 HOH HOH . J 6 HOH A 67 667 68 HOH HOH . J 6 HOH A 68 668 69 HOH HOH . J 6 HOH A 69 669 70 HOH HOH . J 6 HOH A 70 670 71 HOH HOH . J 6 HOH A 71 671 72 HOH HOH . J 6 HOH A 72 672 73 HOH HOH . J 6 HOH A 73 673 74 HOH HOH . J 6 HOH A 74 674 75 HOH HOH . J 6 HOH A 75 675 76 HOH HOH . J 6 HOH A 76 676 77 HOH HOH . J 6 HOH A 77 677 78 HOH HOH . J 6 HOH A 78 678 79 HOH HOH . J 6 HOH A 79 679 80 HOH HOH . J 6 HOH A 80 680 81 HOH HOH . J 6 HOH A 81 681 82 HOH HOH . J 6 HOH A 82 682 83 HOH HOH . J 6 HOH A 83 683 84 HOH HOH . J 6 HOH A 84 684 85 HOH HOH . J 6 HOH A 85 685 86 HOH HOH . J 6 HOH A 86 686 87 HOH HOH . J 6 HOH A 87 687 88 HOH HOH . J 6 HOH A 88 688 89 HOH HOH . J 6 HOH A 89 689 90 HOH HOH . J 6 HOH A 90 690 91 HOH HOH . J 6 HOH A 91 691 92 HOH HOH . J 6 HOH A 92 692 93 HOH HOH . J 6 HOH A 93 693 95 HOH HOH . J 6 HOH A 94 694 96 HOH HOH . J 6 HOH A 95 695 97 HOH HOH . J 6 HOH A 96 696 98 HOH HOH . J 6 HOH A 97 697 99 HOH HOH . J 6 HOH A 98 698 100 HOH HOH . J 6 HOH A 99 699 101 HOH HOH . J 6 HOH A 100 700 102 HOH HOH . J 6 HOH A 101 701 103 HOH HOH . J 6 HOH A 102 702 104 HOH HOH . J 6 HOH A 103 703 105 HOH HOH . J 6 HOH A 104 704 106 HOH HOH . J 6 HOH A 105 705 107 HOH HOH . J 6 HOH A 106 706 108 HOH HOH . J 6 HOH A 107 707 109 HOH HOH . J 6 HOH A 108 708 110 HOH HOH . J 6 HOH A 109 709 111 HOH HOH . J 6 HOH A 110 710 112 HOH HOH . J 6 HOH A 111 711 113 HOH HOH . J 6 HOH A 112 712 114 HOH HOH . J 6 HOH A 113 713 115 HOH HOH . J 6 HOH A 114 714 116 HOH HOH . J 6 HOH A 115 715 117 HOH HOH . J 6 HOH A 116 716 118 HOH HOH . J 6 HOH A 117 717 119 HOH HOH . J 6 HOH A 118 718 120 HOH HOH . J 6 HOH A 119 719 121 HOH HOH . J 6 HOH A 120 720 122 HOH HOH . J 6 HOH A 121 721 1 HOH HOH . J 6 HOH A 122 722 1 HOH HOH . J 6 HOH A 123 723 2 HOH HOH . J 6 HOH A 124 724 3 HOH HOH . J 6 HOH A 125 725 4 HOH HOH . J 6 HOH A 126 726 5 HOH HOH . J 6 HOH A 127 727 6 HOH HOH . J 6 HOH A 128 728 7 HOH HOH . J 6 HOH A 129 729 8 HOH HOH . J 6 HOH A 130 730 9 HOH HOH . J 6 HOH A 131 731 10 HOH HOH . J 6 HOH A 132 732 11 HOH HOH . J 6 HOH A 133 733 12 HOH HOH . J 6 HOH A 134 734 13 HOH HOH . J 6 HOH A 135 735 14 HOH HOH . J 6 HOH A 136 736 15 HOH HOH . J 6 HOH A 137 737 16 HOH HOH . J 6 HOH A 138 738 17 HOH HOH . J 6 HOH A 139 739 18 HOH HOH . J 6 HOH A 140 740 19 HOH HOH . J 6 HOH A 141 741 20 HOH HOH . J 6 HOH A 142 742 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . H 4 25.152 -0.709 4.527 0.5 37.93 ? N1 IMD 514 A 1 HETATM 2 C C2 IMD . . . H 4 25.494 0.11 5.558 0.5 36.61 ? C2 IMD 514 A 1 HETATM 3 N N3 IMD . . . H 4 24.601 1.128 5.647 0.5 30.06 ? N3 IMD 514 A 1 HETATM 4 C C4 IMD . . . H 4 23.671 0.915 4.689 0.5 36.35 ? C4 IMD 514 A 1 HETATM 5 C C5 IMD . . . H 4 24.012 -0.236 3.975 0.5 39.66 ? C5 IMD 514 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #