data_3V7R # _model_server_result.job_id 5wBHhxX4gfD8B0mc52tViw _model_server_result.datetime_utc '2025-01-11 11:51:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 3V7R # _exptl.entry_id 3V7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 470.594 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3aS,4S,6aR)-4-(5-{1-[4-(6-amino-9H-purin-9-yl)butyl]-1H-1,2,3-triazol-4-yl}pentyl)tetrahydro-1H-thieno[3,4-d]imidazol-2(3H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V7R _cell.length_a 94.6 _cell.length_b 94.6 _cell.length_c 130.68 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 94.6 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N10 O S' _chem_comp.formula_weight 470.594 _chem_comp.id 32G _chem_comp.mon_nstd_flag . _chem_comp.name (3aS,4S,6aR)-4-(5-{1-[4-(6-amino-9H-purin-9-yl)butyl]-1H-1,2,3-triazol-4-yl}pentyl)tetrahydro-1H-thieno[3,4-d]imidazol-2(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 32G doub 1 n y N1 C6 32G sing 2 n y C2 N3 32G sing 3 n y N3 C4 32G doub 4 n y C4 C5 32G sing 5 n y C4 N9 32G sing 6 n y C5 C6 32G doub 7 n y C5 N7 32G sing 8 n y C6 N6 32G sing 9 n n N7 C8 32G doub 10 n y C8 N9 32G sing 11 n y N9 CAN 32G sing 12 n n OAB CAX 32G doub 13 n n CAE CAY 32G doub 14 n y CAE NBD 32G sing 15 n y CAF CAG 32G sing 16 n n CAF CAH 32G sing 17 n n CAG CAK 32G sing 18 n n CAH CAL 32G sing 19 n n CAI CAJ 32G sing 20 n n CAI CAM 32G sing 21 n n CAJ CAN 32G sing 22 n n CAK CAY 32G sing 23 n n CAL CBC 32G sing 24 n n CAM NBD 32G sing 25 n n CAO SAW 32G sing 26 n n CAO CBF 32G sing 27 n n NAS NAT 32G doub 28 n y NAS CAY 32G sing 29 n y NAT NBD 32G sing 30 n y NAU CAX 32G sing 31 n n NAU CBF 32G sing 32 n n NAV CAX 32G sing 33 n n NAV CBG 32G sing 34 n n SAW CBC 32G sing 35 n n CBC CBG 32G sing 36 n n CBF CBG 32G sing 37 n n C2 H2 32G sing 38 n n N6 HN6 32G sing 39 n n N6 HN6A 32G sing 40 n n C8 H8 32G sing 41 n n CAE HAE 32G sing 42 n n CAF HAF 32G sing 43 n n CAF HAFA 32G sing 44 n n CAG HAG 32G sing 45 n n CAG HAGA 32G sing 46 n n CAH HAH 32G sing 47 n n CAH HAHA 32G sing 48 n n CAI HAI 32G sing 49 n n CAI HAIA 32G sing 50 n n CAJ HAJ 32G sing 51 n n CAJ HAJA 32G sing 52 n n CAK HAK 32G sing 53 n n CAK HAKA 32G sing 54 n n CAL HAL 32G sing 55 n n CAL HALA 32G sing 56 n n CAM HAM 32G sing 57 n n CAM HAMA 32G sing 58 n n CAN HAN 32G sing 59 n n CAN HANA 32G sing 60 n n CAO HAO 32G sing 61 n n CAO HAOA 32G sing 62 n n NAU HNAU 32G sing 63 n n NAV HNAV 32G sing 64 n n CBC HBC 32G sing 65 n n CBF HBF 32G sing 66 n n CBG HBG 32G sing 67 n n # _atom_sites.entry_id 3V7R _atom_sites.fract_transf_matrix[1][1] 0.010571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007652 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 32G A 1 500 500 32G 326 . C 3 HOH A 1 601 1 HOH HOH . C 3 HOH A 2 602 2 HOH HOH . C 3 HOH A 3 603 3 HOH HOH . C 3 HOH A 4 604 4 HOH HOH . C 3 HOH A 5 605 5 HOH HOH . C 3 HOH A 6 606 6 HOH HOH . C 3 HOH A 7 607 7 HOH HOH . C 3 HOH A 8 608 8 HOH HOH . C 3 HOH A 9 609 9 HOH HOH . C 3 HOH A 10 610 10 HOH HOH . C 3 HOH A 11 611 11 HOH HOH . C 3 HOH A 12 612 12 HOH HOH . C 3 HOH A 13 613 13 HOH HOH . C 3 HOH A 14 614 14 HOH HOH . C 3 HOH A 15 615 15 HOH HOH . C 3 HOH A 16 616 16 HOH HOH . C 3 HOH A 17 617 17 HOH HOH . C 3 HOH A 18 618 18 HOH HOH . C 3 HOH A 19 619 19 HOH HOH . C 3 HOH A 20 620 20 HOH HOH . C 3 HOH A 21 621 21 HOH HOH . C 3 HOH A 22 622 22 HOH HOH . C 3 HOH A 23 623 23 HOH HOH . C 3 HOH A 24 624 24 HOH HOH . C 3 HOH A 25 625 25 HOH HOH . C 3 HOH A 26 626 26 HOH HOH . C 3 HOH A 27 627 27 HOH HOH . C 3 HOH A 28 628 28 HOH HOH . C 3 HOH A 29 629 29 HOH HOH . C 3 HOH A 30 630 30 HOH HOH . C 3 HOH A 31 631 31 HOH HOH . C 3 HOH A 32 632 32 HOH HOH . C 3 HOH A 33 633 33 HOH HOH . C 3 HOH A 34 634 34 HOH HOH . C 3 HOH A 35 635 35 HOH HOH . C 3 HOH A 36 636 36 HOH HOH . C 3 HOH A 37 637 37 HOH HOH . C 3 HOH A 38 638 38 HOH HOH . C 3 HOH A 39 639 39 HOH HOH . C 3 HOH A 40 640 40 HOH HOH . C 3 HOH A 41 641 41 HOH HOH . C 3 HOH A 42 642 42 HOH HOH . C 3 HOH A 43 643 43 HOH HOH . C 3 HOH A 44 644 44 HOH HOH . C 3 HOH A 45 645 45 HOH HOH . C 3 HOH A 46 646 46 HOH HOH . C 3 HOH A 47 647 47 HOH HOH . C 3 HOH A 48 648 48 HOH HOH . C 3 HOH A 49 649 49 HOH HOH . C 3 HOH A 50 650 50 HOH HOH . C 3 HOH A 51 651 51 HOH HOH . C 3 HOH A 52 652 52 HOH HOH . C 3 HOH A 53 653 53 HOH HOH . C 3 HOH A 54 654 54 HOH HOH . C 3 HOH A 55 655 55 HOH HOH . C 3 HOH A 56 656 56 HOH HOH . C 3 HOH A 57 657 57 HOH HOH . C 3 HOH A 58 658 58 HOH HOH . C 3 HOH A 59 659 59 HOH HOH . C 3 HOH A 60 660 60 HOH HOH . C 3 HOH A 61 661 61 HOH HOH . C 3 HOH A 62 662 62 HOH HOH . C 3 HOH A 63 663 63 HOH HOH . C 3 HOH A 64 664 64 HOH HOH . C 3 HOH A 65 665 65 HOH HOH . C 3 HOH A 66 666 66 HOH HOH . C 3 HOH A 67 667 67 HOH HOH . C 3 HOH A 68 668 68 HOH HOH . C 3 HOH A 69 669 69 HOH HOH . C 3 HOH A 70 670 70 HOH HOH . C 3 HOH A 71 671 71 HOH HOH . C 3 HOH A 72 672 72 HOH HOH . C 3 HOH A 73 673 73 HOH HOH . C 3 HOH A 74 674 74 HOH HOH . C 3 HOH A 75 675 75 HOH HOH . C 3 HOH A 76 676 76 HOH HOH . C 3 HOH A 77 677 77 HOH HOH . C 3 HOH A 78 678 78 HOH HOH . C 3 HOH A 79 679 79 HOH HOH . C 3 HOH A 80 680 80 HOH HOH . C 3 HOH A 81 681 81 HOH HOH . C 3 HOH A 82 682 82 HOH HOH . C 3 HOH A 83 683 83 HOH HOH . C 3 HOH A 84 684 84 HOH HOH . C 3 HOH A 85 685 85 HOH HOH . C 3 HOH A 86 686 86 HOH HOH . C 3 HOH A 87 687 87 HOH HOH . C 3 HOH A 88 688 88 HOH HOH . C 3 HOH A 89 689 89 HOH HOH . C 3 HOH A 90 690 90 HOH HOH . C 3 HOH A 91 691 91 HOH HOH . C 3 HOH A 92 692 92 HOH HOH . C 3 HOH A 93 693 93 HOH HOH . C 3 HOH A 94 694 94 HOH HOH . C 3 HOH A 95 695 95 HOH HOH . C 3 HOH A 96 696 96 HOH HOH . C 3 HOH A 97 697 97 HOH HOH . C 3 HOH A 98 698 98 HOH HOH . C 3 HOH A 99 699 99 HOH HOH . C 3 HOH A 100 700 100 HOH HOH . C 3 HOH A 101 701 101 HOH HOH . C 3 HOH A 102 702 102 HOH HOH . C 3 HOH A 103 703 103 HOH HOH . C 3 HOH A 104 704 104 HOH HOH . C 3 HOH A 105 705 105 HOH HOH . C 3 HOH A 106 706 106 HOH HOH . C 3 HOH A 107 707 107 HOH HOH . C 3 HOH A 108 708 108 HOH HOH . C 3 HOH A 109 709 109 HOH HOH . C 3 HOH A 110 710 110 HOH HOH . C 3 HOH A 111 711 111 HOH HOH . C 3 HOH A 112 712 112 HOH HOH . C 3 HOH A 113 713 113 HOH HOH . C 3 HOH A 114 714 114 HOH HOH . C 3 HOH A 115 715 115 HOH HOH . C 3 HOH A 116 716 116 HOH HOH . C 3 HOH A 117 717 117 HOH HOH . C 3 HOH A 118 718 118 HOH HOH . C 3 HOH A 119 719 119 HOH HOH . C 3 HOH A 120 720 120 HOH HOH . C 3 HOH A 121 721 121 HOH HOH . C 3 HOH A 122 722 122 HOH HOH . C 3 HOH A 123 723 123 HOH HOH . C 3 HOH A 124 724 124 HOH HOH . C 3 HOH A 125 725 125 HOH HOH . C 3 HOH A 126 726 126 HOH HOH . C 3 HOH A 127 727 127 HOH HOH . C 3 HOH A 128 728 128 HOH HOH . C 3 HOH A 129 729 129 HOH HOH . C 3 HOH A 130 730 130 HOH HOH . C 3 HOH A 131 731 131 HOH HOH . C 3 HOH A 132 732 132 HOH HOH . C 3 HOH A 133 733 133 HOH HOH . C 3 HOH A 134 734 134 HOH HOH . C 3 HOH A 135 735 135 HOH HOH . C 3 HOH A 136 736 136 HOH HOH . C 3 HOH A 137 737 137 HOH HOH . C 3 HOH A 138 738 138 HOH HOH . C 3 HOH A 139 739 139 HOH HOH . C 3 HOH A 140 740 140 HOH HOH . C 3 HOH A 141 741 141 HOH HOH . C 3 HOH A 142 742 142 HOH HOH . C 3 HOH A 143 743 143 HOH HOH . C 3 HOH A 144 744 144 HOH HOH . C 3 HOH A 145 745 145 HOH HOH . C 3 HOH A 146 746 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 32G . . . B 2 50.512 25.32 21.841 1 46.35 ? N1 32G 500 A 1 HETATM 2 C C2 32G . . . B 2 51.155 25.572 20.683 1 46.89 ? C2 32G 500 A 1 HETATM 3 N N3 32G . . . B 2 52.303 24.916 20.378 1 45.56 ? N3 32G 500 A 1 HETATM 4 C C4 32G . . . B 2 52.812 24.035 21.263 1 43.14 ? C4 32G 500 A 1 HETATM 5 C C5 32G . . . B 2 52.157 23.777 22.471 1 41.55 ? C5 32G 500 A 1 HETATM 6 C C6 32G . . . B 2 50.969 24.434 22.749 1 41.51 ? C6 32G 500 A 1 HETATM 7 N N6 32G . . . B 2 50.271 24.252 23.85 1 38.85 ? N6 32G 500 A 1 HETATM 8 N N7 32G . . . B 2 52.891 22.864 23.115 1 43.39 ? N7 32G 500 A 1 HETATM 9 C C8 32G . . . B 2 53.967 22.538 22.394 1 41.67 ? C8 32G 500 A 1 HETATM 10 N N9 32G . . . B 2 53.903 23.255 21.25 1 44.31 ? N9 32G 500 A 1 HETATM 11 O OAB 32G . . . B 2 49.786 13.798 25.929 1 36.27 ? OAB 32G 500 A 1 HETATM 12 C CAE 32G . . . B 2 51.538 19.226 17.51 1 33.75 ? CAE 32G 500 A 1 HETATM 13 C CAF 32G . . . B 2 48.865 16.217 19.885 1 42.27 ? CAF 32G 500 A 1 HETATM 14 C CAG 32G . . . B 2 50.004 16.95 19.246 1 40.84 ? CAG 32G 500 A 1 HETATM 15 C CAH 32G . . . B 2 48.35 17.15 20.942 1 39.72 ? CAH 32G 500 A 1 HETATM 16 C CAI 32G . . . B 2 54.269 21.16 18.747 1 34.57 ? CAI 32G 500 A 1 HETATM 17 C CAJ 32G . . . B 2 54.248 22.702 18.896 1 34.29 ? CAJ 32G 500 A 1 HETATM 18 C CAK 32G . . . B 2 50.142 16.978 17.712 1 38.45 ? CAK 32G 500 A 1 HETATM 19 C CAL 32G . . . B 2 48.593 16.676 22.322 1 39.42 ? CAL 32G 500 A 1 HETATM 20 C CAM 32G . . . B 2 53.499 20.777 17.46 1 30.85 ? CAM 32G 500 A 1 HETATM 21 C CAN 32G . . . B 2 54.909 23.191 20.156 1 37.27 ? CAN 32G 500 A 1 HETATM 22 C CAO 32G . . . B 2 46.002 15.905 25.236 1 33.37 ? CAO 32G 500 A 1 HETATM 23 N NAS 32G . . . B 2 52.683 17.434 17.841 1 35.15 ? NAS 32G 500 A 1 HETATM 24 N NAT 32G . . . B 2 53.466 18.406 17.772 1 35.51 ? NAT 32G 500 A 1 HETATM 25 N NAU 32G . . . B 2 47.557 14.048 25.716 1 36.04 ? NAU 32G 500 A 1 HETATM 26 N NAV 32G . . . B 2 48.852 14.649 24.036 1 32.89 ? NAV 32G 500 A 1 HETATM 27 S SAW 32G . . . B 2 47.1 17.191 24.597 1 36.31 ? SAW 32G 500 A 1 HETATM 28 C CAX 32G . . . B 2 48.797 14.129 25.256 1 36.56 ? CAX 32G 500 A 1 HETATM 29 C CAY 32G . . . B 2 51.435 17.889 17.654 1 38.22 ? CAY 32G 500 A 1 HETATM 30 C CBC 32G . . . B 2 47.289 16.321 23.029 1 37.82 ? CBC 32G 500 A 1 HETATM 31 N NBD 32G . . . B 2 52.851 19.467 17.602 1 34.88 ? NBD 32G 500 A 1 HETATM 32 C CBF 32G . . . B 2 46.613 14.585 24.739 1 35.2 ? CBF 32G 500 A 1 HETATM 33 C CBG 32G . . . B 2 47.489 14.869 23.533 1 36.44 ? CBG 32G 500 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #