data_3V7S # _model_server_result.job_id 8WjvY4TxYFmGjHTusDLZXw _model_server_result.datetime_utc '2025-01-11 11:59:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v7s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 3V7S # _exptl.entry_id 3V7S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 484.614 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-methyl-3-[4-(4-{5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentyl}-1H-1,2,3-triazol-1-yl)butyl]-1,3-benzoxazol-2(3H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V7S _cell.length_a 93.5 _cell.length_b 93.5 _cell.length_c 130.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V7S _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 93.5 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H32 N6 O3 S' _chem_comp.formula_weight 484.614 _chem_comp.id 36F _chem_comp.mon_nstd_flag . _chem_comp.name 5-methyl-3-[4-(4-{5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentyl}-1H-1,2,3-triazol-1-yl)butyl]-1,3-benzoxazol-2(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAY 36F sing 1 n n OAB CAX 36F doub 2 n n OAC CBA 36F doub 3 n n CAD CAE 36F doub 4 n y CAD CAY 36F sing 5 n y CAE CBB 36F sing 6 n y CAF CAY 36F doub 7 n y CAF CBC 36F sing 8 n y CAG CAZ 36F doub 9 n y CAG NBE 36F sing 10 n y CAH CAI 36F sing 11 n n CAH CAJ 36F sing 12 n n CAI CAM 36F sing 13 n n CAJ CAN 36F sing 14 n n CAK CAL 36F sing 15 n n CAK CAO 36F sing 16 n n CAL CAP 36F sing 17 n n CAM CAZ 36F sing 18 n n CAN CBD 36F sing 19 n n CAO NBE 36F sing 20 n n CAP NBF 36F sing 21 n n CAQ SAW 36F sing 22 n n CAQ CBG 36F sing 23 n n NAR NAS 36F doub 24 n y NAR CAZ 36F sing 25 n y NAS NBE 36F sing 26 n y NAT CAX 36F sing 27 n n NAT CBG 36F sing 28 n n NAU CAX 36F sing 29 n n NAU CBH 36F sing 30 n n OAV CBA 36F sing 31 n n OAV CBB 36F sing 32 n n SAW CBD 36F sing 33 n n CBA NBF 36F sing 34 n n CBB CBC 36F doub 35 n y CBC NBF 36F sing 36 n n CBD CBH 36F sing 37 n n CBG CBH 36F sing 38 n n CAA HAA 36F sing 39 n n CAA HAAA 36F sing 40 n n CAA HAAB 36F sing 41 n n CAD HAD 36F sing 42 n n CAE HAE 36F sing 43 n n CAF HAF 36F sing 44 n n CAG HAG 36F sing 45 n n CAH HAH 36F sing 46 n n CAH HAHA 36F sing 47 n n CAI HAI 36F sing 48 n n CAI HAIA 36F sing 49 n n CAJ HAJ 36F sing 50 n n CAJ HAJA 36F sing 51 n n CAK HAK 36F sing 52 n n CAK HAKA 36F sing 53 n n CAL HAL 36F sing 54 n n CAL HALA 36F sing 55 n n CAM HAM 36F sing 56 n n CAM HAMA 36F sing 57 n n CAN HAN 36F sing 58 n n CAN HANA 36F sing 59 n n CAO HAO 36F sing 60 n n CAO HAOA 36F sing 61 n n CAP HAP 36F sing 62 n n CAP HAPA 36F sing 63 n n CAQ HAQ 36F sing 64 n n CAQ HAQA 36F sing 65 n n NAT HNAT 36F sing 66 n n NAU HNAU 36F sing 67 n n CBD HBD 36F sing 68 n n CBG HBG 36F sing 69 n n CBH HBH 36F sing 70 n n # _atom_sites.entry_id 3V7S _atom_sites.fract_transf_matrix[1][1] 0.010695 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010695 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 36F A 1 401 500 36F 364 . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 3 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 5 HOH HOH . C 3 HOH A 6 506 6 HOH HOH . C 3 HOH A 7 507 7 HOH HOH . C 3 HOH A 8 508 8 HOH HOH . C 3 HOH A 9 509 9 HOH HOH . C 3 HOH A 10 510 10 HOH HOH . C 3 HOH A 11 511 11 HOH HOH . C 3 HOH A 12 512 12 HOH HOH . C 3 HOH A 13 513 13 HOH HOH . C 3 HOH A 14 514 14 HOH HOH . C 3 HOH A 15 515 15 HOH HOH . C 3 HOH A 16 516 16 HOH HOH . C 3 HOH A 17 517 17 HOH HOH . C 3 HOH A 18 518 18 HOH HOH . C 3 HOH A 19 519 19 HOH HOH . C 3 HOH A 20 520 20 HOH HOH . C 3 HOH A 21 521 21 HOH HOH . C 3 HOH A 22 522 22 HOH HOH . C 3 HOH A 23 523 23 HOH HOH . C 3 HOH A 24 524 24 HOH HOH . C 3 HOH A 25 525 25 HOH HOH . C 3 HOH A 26 526 26 HOH HOH . C 3 HOH A 27 527 27 HOH HOH . C 3 HOH A 28 528 28 HOH HOH . C 3 HOH A 29 529 29 HOH HOH . C 3 HOH A 30 530 30 HOH HOH . C 3 HOH A 31 531 31 HOH HOH . C 3 HOH A 32 532 32 HOH HOH . C 3 HOH A 33 533 33 HOH HOH . C 3 HOH A 34 534 34 HOH HOH . C 3 HOH A 35 535 35 HOH HOH . C 3 HOH A 36 536 36 HOH HOH . C 3 HOH A 37 537 37 HOH HOH . C 3 HOH A 38 538 38 HOH HOH . C 3 HOH A 39 539 39 HOH HOH . C 3 HOH A 40 540 40 HOH HOH . C 3 HOH A 41 541 41 HOH HOH . C 3 HOH A 42 542 42 HOH HOH . C 3 HOH A 43 543 43 HOH HOH . C 3 HOH A 44 544 44 HOH HOH . C 3 HOH A 45 545 45 HOH HOH . C 3 HOH A 46 546 46 HOH HOH . C 3 HOH A 47 547 47 HOH HOH . C 3 HOH A 48 548 48 HOH HOH . C 3 HOH A 49 549 49 HOH HOH . C 3 HOH A 50 550 50 HOH HOH . C 3 HOH A 51 551 51 HOH HOH . C 3 HOH A 52 552 52 HOH HOH . C 3 HOH A 53 553 53 HOH HOH . C 3 HOH A 54 554 54 HOH HOH . C 3 HOH A 55 555 55 HOH HOH . C 3 HOH A 56 556 56 HOH HOH . C 3 HOH A 57 557 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 36F . . . B 2 50.99 24.115 23.686 1 91.26 ? CAA 36F 401 A 1 HETATM 2 O OAB 36F . . . B 2 49.304 13.675 25.538 1 29.99 ? OAB 36F 401 A 1 HETATM 3 O OAC 36F . . . B 2 55.337 23.511 17.825 1 85.87 ? OAC 36F 401 A 1 HETATM 4 C CAD 36F . . . B 2 51.677 25.6 21.794 1 92.31 ? CAD 36F 401 A 1 HETATM 5 C CAE 36F . . . B 2 52.377 25.896 20.616 1 90.92 ? CAE 36F 401 A 1 HETATM 6 C CAF 36F . . . B 2 52.649 23.366 21.774 1 90.71 ? CAF 36F 401 A 1 HETATM 7 C CAG 36F . . . B 2 51.005 18.709 16.796 1 61.51 ? CAG 36F 401 A 1 HETATM 8 C CAH 36F . . . B 2 48.857 16.12 19.607 1 50.32 ? CAH 36F 401 A 1 HETATM 9 C CAI 36F . . . B 2 48.683 17.019 18.359 1 53.76 ? CAI 36F 401 A 1 HETATM 10 C CAJ 36F . . . B 2 47.586 16.078 20.454 1 45.22 ? CAJ 36F 401 A 1 HETATM 11 C CAK 36F . . . B 2 54.093 20.581 17.664 1 70.42 ? CAK 36F 401 A 1 HETATM 12 C CAL 36F . . . B 2 53.718 20.703 19.147 1 74.36 ? CAL 36F 401 A 1 HETATM 13 C CAM 36F . . . B 2 49.56 16.645 17.141 1 56.75 ? CAM 36F 401 A 1 HETATM 14 C CAN 36F . . . B 2 47.861 16.607 21.857 1 40.24 ? CAN 36F 401 A 1 HETATM 15 C CAO 36F . . . B 2 52.884 20.298 16.744 1 65.83 ? CAO 36F 401 A 1 HETATM 16 C CAP 36F . . . B 2 54.676 21.622 19.904 1 79.86 ? CAP 36F 401 A 1 HETATM 17 C CAQ 36F . . . B 2 45.537 15.907 25.082 1 33.79 ? CAQ 36F 401 A 1 HETATM 18 N NAR 36F . . . B 2 52.067 17.022 17.574 1 59.88 ? NAR 36F 401 A 1 HETATM 19 N NAS 36F . . . B 2 52.856 17.966 17.456 1 61.69 ? NAS 36F 401 A 1 HETATM 20 N NAT 36F . . . B 2 47.062 14.023 25.522 1 32.58 ? NAT 36F 401 A 1 HETATM 21 N NAU 36F . . . B 2 48.292 14.469 23.689 1 33.37 ? NAU 36F 401 A 1 HETATM 22 O OAV 36F . . . B 2 53.972 25.02 18.869 1 87.3 ? OAV 36F 401 A 1 HETATM 23 S SAW 36F . . . B 2 46.652 17.117 24.301 1 34.24 ? SAW 36F 401 A 1 HETATM 24 C CAX 36F . . . B 2 48.279 14.029 24.953 1 32.81 ? CAX 36F 401 A 1 HETATM 25 C CAY 36F . . . B 2 51.807 24.342 22.388 1 92.32 ? CAY 36F 401 A 1 HETATM 26 C CAZ 36F . . . B 2 50.866 17.444 17.167 1 59.44 ? CAZ 36F 401 A 1 HETATM 27 C CBA 36F . . . B 2 54.573 23.807 18.745 1 86.12 ? CBA 36F 401 A 1 HETATM 28 C CBB 36F . . . B 2 53.206 24.944 20.002 1 89.01 ? CBB 36F 401 A 1 HETATM 29 C CBC 36F . . . B 2 53.349 23.664 20.568 1 88.32 ? CBC 36F 401 A 1 HETATM 30 C CBD 36F . . . B 2 46.711 16.204 22.756 1 35.97 ? CBD 36F 401 A 1 HETATM 31 N NBE 36F . . . B 2 52.281 18.972 17.01 1 63.11 ? NBE 36F 401 A 1 HETATM 32 N NBF 36F . . . B 2 54.202 23.008 19.751 1 85.14 ? NBF 36F 401 A 1 HETATM 33 C CBG 36F . . . B 2 46.063 14.537 24.576 1 33.58 ? CBG 36F 401 A 1 HETATM 34 C CBH 36F . . . B 2 46.901 14.764 23.287 1 34.76 ? CBH 36F 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #