data_3V7U
#
_model_server_result.job_id            utLD3nqrO0UIroO9htatmQ 
_model_server_result.datetime_utc      '2024-11-08 22:30:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3v7u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    3V7U 
#
_exptl.entry_id    3V7U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              297.334 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-DEOXY-5'-METHYLTHIOADENOSINE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3V7U 
_cell.length_a            62.521 
_cell.length_b            75.595 
_cell.length_c            118.774 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3V7U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.521 0 0 
3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.521 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C11 H15 N5 O3 S' 
_chem_comp.formula_weight    297.334 
_chem_comp.id                MTA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-DEOXY-5'-METHYLTHIOADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CS S5' MTA sing 270 n n 
CS HCS1 MTA sing 271 n n 
CS HCS2 MTA sing 272 n n 
CS HCS3 MTA sing 273 n n 
S5' C5' MTA sing 274 n n 
C5' C4' MTA sing 275 n n 
C5' "H5'1" MTA sing 276 n n 
C5' "H5'2" MTA sing 277 n n 
C4' O4' MTA sing 278 n n 
C4' C3' MTA sing 279 n n 
C4' H4' MTA sing 280 n n 
O4' C1' MTA sing 281 n n 
C2' O2' MTA sing 282 n n 
C2' C3' MTA sing 283 n n 
C2' C1' MTA sing 284 n n 
C2' H2' MTA sing 285 n n 
O2' HO2' MTA sing 286 n n 
C3' O3' MTA sing 287 n n 
C3' H3' MTA sing 288 n n 
O3' H3T MTA sing 289 n n 
C1' N9 MTA sing 290 n n 
C1' H1' MTA sing 291 n n 
N9 C8 MTA sing 292 n y 
N9 C4 MTA sing 293 n y 
C8 N7 MTA doub 294 n y 
C8 H8 MTA sing 295 n n 
N7 C5 MTA sing 296 n y 
C5 C6 MTA sing 297 n y 
C5 C4 MTA doub 298 n y 
C6 N6 MTA sing 299 n n 
C6 N1 MTA doub 300 n y 
N6 H61 MTA sing 301 n n 
N6 H62 MTA sing 302 n n 
N1 C2 MTA sing 303 n y 
C2 N3 MTA doub 304 n y 
C2 H2 MTA sing 305 n n 
N3 C4 MTA sing 306 n y 
#
_atom_sites.entry_id                     3V7U 
_atom_sites.fract_transf_matrix[1][1]    0.015995 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013228 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008419 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MTA A 1 301 1 MTA MTA . 
C 2 MTA A 1 302 2 MTA MTA . 
D 3 CIT A 1 303 1 CIT CIT . 
E 4 GOL A 1 304 1 GOL GOL . 
F 5 HOH A 1 401 1 HOH HOH . 
F 5 HOH A 2 402 2 HOH HOH . 
F 5 HOH A 3 403 3 HOH HOH . 
F 5 HOH A 4 404 5 HOH HOH . 
F 5 HOH A 5 405 6 HOH HOH . 
F 5 HOH A 6 406 7 HOH HOH . 
F 5 HOH A 7 407 8 HOH HOH . 
F 5 HOH A 8 408 9 HOH HOH . 
F 5 HOH A 9 409 12 HOH HOH . 
F 5 HOH A 10 410 13 HOH HOH . 
F 5 HOH A 11 411 14 HOH HOH . 
F 5 HOH A 12 412 15 HOH HOH . 
F 5 HOH A 13 413 16 HOH HOH . 
F 5 HOH A 14 414 17 HOH HOH . 
F 5 HOH A 15 415 19 HOH HOH . 
F 5 HOH A 16 416 20 HOH HOH . 
F 5 HOH A 17 417 21 HOH HOH . 
F 5 HOH A 18 418 23 HOH HOH . 
F 5 HOH A 19 419 24 HOH HOH . 
F 5 HOH A 20 420 25 HOH HOH . 
F 5 HOH A 21 421 26 HOH HOH . 
F 5 HOH A 22 422 27 HOH HOH . 
F 5 HOH A 23 423 28 HOH HOH . 
F 5 HOH A 24 424 29 HOH HOH . 
F 5 HOH A 25 425 30 HOH HOH . 
F 5 HOH A 26 426 32 HOH HOH . 
F 5 HOH A 27 427 33 HOH HOH . 
F 5 HOH A 28 428 34 HOH HOH . 
F 5 HOH A 29 429 36 HOH HOH . 
F 5 HOH A 30 430 37 HOH HOH . 
F 5 HOH A 31 431 38 HOH HOH . 
F 5 HOH A 32 432 39 HOH HOH . 
F 5 HOH A 33 433 44 HOH HOH . 
F 5 HOH A 34 434 45 HOH HOH . 
F 5 HOH A 35 435 46 HOH HOH . 
F 5 HOH A 36 436 48 HOH HOH . 
F 5 HOH A 37 437 50 HOH HOH . 
F 5 HOH A 38 438 53 HOH HOH . 
F 5 HOH A 39 439 57 HOH HOH . 
F 5 HOH A 40 440 62 HOH HOH . 
F 5 HOH A 41 441 63 HOH HOH . 
F 5 HOH A 42 442 65 HOH HOH . 
F 5 HOH A 43 443 67 HOH HOH . 
F 5 HOH A 44 444 70 HOH HOH . 
F 5 HOH A 45 445 78 HOH HOH . 
F 5 HOH A 46 446 79 HOH HOH . 
F 5 HOH A 47 447 82 HOH HOH . 
F 5 HOH A 48 448 84 HOH HOH . 
F 5 HOH A 49 449 85 HOH HOH . 
F 5 HOH A 50 450 87 HOH HOH . 
F 5 HOH A 51 451 102 HOH HOH . 
F 5 HOH A 52 452 106 HOH HOH . 
F 5 HOH A 53 453 107 HOH HOH . 
F 5 HOH A 54 454 109 HOH HOH . 
F 5 HOH A 55 455 119 HOH HOH . 
F 5 HOH A 56 456 137 HOH HOH . 
F 5 HOH A 57 457 140 HOH HOH . 
F 5 HOH A 58 458 152 HOH HOH . 
F 5 HOH A 59 459 157 HOH HOH . 
F 5 HOH A 60 460 208 HOH HOH . 
F 5 HOH A 61 461 219 HOH HOH . 
F 5 HOH A 62 462 228 HOH HOH . 
F 5 HOH A 63 463 231 HOH HOH . 
F 5 HOH A 64 464 234 HOH HOH . 
F 5 HOH A 65 465 244 HOH HOH . 
F 5 HOH A 66 466 245 HOH HOH . 
F 5 HOH A 67 467 246 HOH HOH . 
F 5 HOH A 68 468 247 HOH HOH . 
F 5 HOH A 69 469 248 HOH HOH . 
F 5 HOH A 70 470 250 HOH HOH . 
F 5 HOH A 71 471 251 HOH HOH . 
F 5 HOH A 72 472 252 HOH HOH . 
F 5 HOH A 73 473 253 HOH HOH . 
F 5 HOH A 74 474 254 HOH HOH . 
F 5 HOH A 75 475 256 HOH HOH . 
F 5 HOH A 76 476 258 HOH HOH . 
F 5 HOH A 77 477 264 HOH HOH . 
F 5 HOH A 78 478 266 HOH HOH . 
F 5 HOH A 79 479 268 HOH HOH . 
F 5 HOH A 80 480 276 HOH HOH . 
F 5 HOH A 81 481 278 HOH HOH . 
F 5 HOH A 82 482 280 HOH HOH . 
F 5 HOH A 83 483 281 HOH HOH . 
F 5 HOH A 84 484 284 HOH HOH . 
F 5 HOH A 85 485 285 HOH HOH . 
F 5 HOH A 86 486 286 HOH HOH . 
F 5 HOH A 87 487 287 HOH HOH . 
F 5 HOH A 88 488 288 HOH HOH . 
F 5 HOH A 89 489 289 HOH HOH . 
F 5 HOH A 90 490 293 HOH HOH . 
F 5 HOH A 91 491 295 HOH HOH . 
F 5 HOH A 92 492 296 HOH HOH . 
F 5 HOH A 93 493 297 HOH HOH . 
F 5 HOH A 94 494 298 HOH HOH . 
F 5 HOH A 95 495 299 HOH HOH . 
F 5 HOH A 96 496 300 HOH HOH . 
F 5 HOH A 97 497 301 HOH HOH . 
F 5 HOH A 98 498 302 HOH HOH . 
F 5 HOH A 99 499 303 HOH HOH . 
F 5 HOH A 100 500 304 HOH HOH . 
F 5 HOH A 101 501 305 HOH HOH . 
F 5 HOH A 102 502 306 HOH HOH . 
F 5 HOH A 103 503 307 HOH HOH . 
F 5 HOH A 104 504 308 HOH HOH . 
F 5 HOH A 105 505 309 HOH HOH . 
F 5 HOH A 106 506 310 HOH HOH . 
F 5 HOH A 107 507 311 HOH HOH . 
F 5 HOH A 108 508 312 HOH HOH . 
F 5 HOH A 109 509 313 HOH HOH . 
F 5 HOH A 110 510 314 HOH HOH . 
F 5 HOH A 111 511 315 HOH HOH . 
F 5 HOH A 112 512 316 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CS MTA . . . B 2 17.019 4.546 13.545 0.5 53.02 ? CS MTA 301 A 1 
HETATM 2 S S5' MTA . . . B 2 16.196 5.67 12.42 0.7 44.84 ? S5' MTA 301 A 1 
HETATM 3 C C5' MTA . . . B 2 17.252 7.149 12.431 1 42.87 ? C5' MTA 301 A 1 
HETATM 4 C C4' MTA . . . B 2 18.279 7.177 13.563 1 44.29 ? C4' MTA 301 A 1 
HETATM 5 O O4' MTA . . . B 2 19.233 8.209 13.216 1 40.67 ? O4' MTA 301 A 1 
HETATM 6 C C2' MTA . . . B 2 17.636 9.119 14.717 1 48.59 ? C2' MTA 301 A 1 
HETATM 7 O O2' MTA . . . B 2 17.59 9.79 15.976 1 54.37 ? O2' MTA 301 A 1 
HETATM 8 C C3' MTA . . . B 2 17.709 7.617 14.914 1 50.69 ? C3' MTA 301 A 1 
HETATM 9 O O3' MTA . . . B 2 18.682 7.304 15.914 1 54.82 ? O3' MTA 301 A 1 
HETATM 10 C C1' MTA . . . B 2 18.997 9.36 14.097 1 40.53 ? C1' MTA 301 A 1 
HETATM 11 N N9 MTA . . . B 2 19.121 10.622 13.327 1 36.66 ? N9 MTA 301 A 1 
HETATM 12 C C8 MTA . . . B 2 18.148 11.421 12.88 1 34.13 ? C8 MTA 301 A 1 
HETATM 13 N N7 MTA . . . B 2 18.692 12.445 12.239 1 32.6 ? N7 MTA 301 A 1 
HETATM 14 C C5 MTA . . . B 2 20.018 12.29 12.281 1 32 ? C5 MTA 301 A 1 
HETATM 15 C C6 MTA . . . B 2 21.094 13.024 11.793 1 29.81 ? C6 MTA 301 A 1 
HETATM 16 N N6 MTA . . . B 2 20.903 14.162 11.122 1 22.99 ? N6 MTA 301 A 1 
HETATM 17 N N1 MTA . . . B 2 22.334 12.562 12.027 1 28.91 ? N1 MTA 301 A 1 
HETATM 18 C C2 MTA . . . B 2 22.552 11.431 12.702 1 27.52 ? C2 MTA 301 A 1 
HETATM 19 N N3 MTA . . . B 2 21.551 10.719 13.185 1 27.77 ? N3 MTA 301 A 1 
HETATM 20 C C4 MTA . . . B 2 20.286 11.133 12.984 1 32.65 ? C4 MTA 301 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           20 
#