data_3V80 # _model_server_result.job_id aF80hrlAEAymcXMkgeceEA _model_server_result.datetime_utc '2024-11-08 20:43:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v80 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 3V80 # _exptl.entry_id 3V80 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V80 _cell.length_a 62.961 _cell.length_b 75.172 _cell.length_c 118.531 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V80 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.961 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.961 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 188 n n C1 C2 GOL sing 189 n n C1 H11 GOL sing 190 n n C1 H12 GOL sing 191 n n O1 HO1 GOL sing 192 n n C2 O2 GOL sing 193 n n C2 C3 GOL sing 194 n n C2 H2 GOL sing 195 n n O2 HO2 GOL sing 196 n n C3 O3 GOL sing 197 n n C3 H31 GOL sing 198 n n C3 H32 GOL sing 199 n n O3 HO3 GOL sing 200 n n # _atom_sites.entry_id 3V80 _atom_sites.fract_transf_matrix[1][1] 0.015883 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013303 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008437 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AOC A 1 301 1 AOC AOC . C 2 AOC A 1 302 2 AOC AOC . D 3 CIT A 1 303 1 CIT CIT . E 4 GOL A 1 304 3 GOL GOL . F 5 HOH A 1 401 1 HOH HOH . F 5 HOH A 2 402 2 HOH HOH . F 5 HOH A 3 403 3 HOH HOH . F 5 HOH A 4 404 4 HOH HOH . F 5 HOH A 5 405 5 HOH HOH . F 5 HOH A 6 406 6 HOH HOH . F 5 HOH A 7 407 7 HOH HOH . F 5 HOH A 8 408 8 HOH HOH . F 5 HOH A 9 409 9 HOH HOH . F 5 HOH A 10 410 10 HOH HOH . F 5 HOH A 11 411 11 HOH HOH . F 5 HOH A 12 412 12 HOH HOH . F 5 HOH A 13 413 13 HOH HOH . F 5 HOH A 14 414 14 HOH HOH . F 5 HOH A 15 415 15 HOH HOH . F 5 HOH A 16 416 16 HOH HOH . F 5 HOH A 17 417 18 HOH HOH . F 5 HOH A 18 418 19 HOH HOH . F 5 HOH A 19 419 20 HOH HOH . F 5 HOH A 20 420 21 HOH HOH . F 5 HOH A 21 421 22 HOH HOH . F 5 HOH A 22 422 23 HOH HOH . F 5 HOH A 23 423 25 HOH HOH . F 5 HOH A 24 424 26 HOH HOH . F 5 HOH A 25 425 27 HOH HOH . F 5 HOH A 26 426 28 HOH HOH . F 5 HOH A 27 427 29 HOH HOH . F 5 HOH A 28 428 31 HOH HOH . F 5 HOH A 29 429 32 HOH HOH . F 5 HOH A 30 430 33 HOH HOH . F 5 HOH A 31 431 34 HOH HOH . F 5 HOH A 32 432 36 HOH HOH . F 5 HOH A 33 433 37 HOH HOH . F 5 HOH A 34 434 38 HOH HOH . F 5 HOH A 35 435 40 HOH HOH . F 5 HOH A 36 436 41 HOH HOH . F 5 HOH A 37 437 42 HOH HOH . F 5 HOH A 38 438 43 HOH HOH . F 5 HOH A 39 439 46 HOH HOH . F 5 HOH A 40 440 47 HOH HOH . F 5 HOH A 41 441 48 HOH HOH . F 5 HOH A 42 442 49 HOH HOH . F 5 HOH A 43 443 50 HOH HOH . F 5 HOH A 44 444 51 HOH HOH . F 5 HOH A 45 445 52 HOH HOH . F 5 HOH A 46 446 53 HOH HOH . F 5 HOH A 47 447 54 HOH HOH . F 5 HOH A 48 448 55 HOH HOH . F 5 HOH A 49 449 56 HOH HOH . F 5 HOH A 50 450 59 HOH HOH . F 5 HOH A 51 451 60 HOH HOH . F 5 HOH A 52 452 61 HOH HOH . F 5 HOH A 53 453 63 HOH HOH . F 5 HOH A 54 454 64 HOH HOH . F 5 HOH A 55 455 65 HOH HOH . F 5 HOH A 56 456 66 HOH HOH . F 5 HOH A 57 457 67 HOH HOH . F 5 HOH A 58 458 68 HOH HOH . F 5 HOH A 59 459 70 HOH HOH . F 5 HOH A 60 460 71 HOH HOH . F 5 HOH A 61 461 72 HOH HOH . F 5 HOH A 62 462 73 HOH HOH . F 5 HOH A 63 463 75 HOH HOH . F 5 HOH A 64 464 76 HOH HOH . F 5 HOH A 65 465 77 HOH HOH . F 5 HOH A 66 466 80 HOH HOH . F 5 HOH A 67 467 81 HOH HOH . F 5 HOH A 68 468 86 HOH HOH . F 5 HOH A 69 469 87 HOH HOH . F 5 HOH A 70 470 89 HOH HOH . F 5 HOH A 71 471 92 HOH HOH . F 5 HOH A 72 472 94 HOH HOH . F 5 HOH A 73 473 98 HOH HOH . F 5 HOH A 74 474 100 HOH HOH . F 5 HOH A 75 475 101 HOH HOH . F 5 HOH A 76 476 102 HOH HOH . F 5 HOH A 77 477 103 HOH HOH . F 5 HOH A 78 478 105 HOH HOH . F 5 HOH A 79 479 107 HOH HOH . F 5 HOH A 80 480 109 HOH HOH . F 5 HOH A 81 481 111 HOH HOH . F 5 HOH A 82 482 112 HOH HOH . F 5 HOH A 83 483 114 HOH HOH . F 5 HOH A 84 484 115 HOH HOH . F 5 HOH A 85 485 116 HOH HOH . F 5 HOH A 86 486 120 HOH HOH . F 5 HOH A 87 487 123 HOH HOH . F 5 HOH A 88 488 127 HOH HOH . F 5 HOH A 89 489 130 HOH HOH . F 5 HOH A 90 490 132 HOH HOH . F 5 HOH A 91 491 133 HOH HOH . F 5 HOH A 92 492 134 HOH HOH . F 5 HOH A 93 493 136 HOH HOH . F 5 HOH A 94 494 137 HOH HOH . F 5 HOH A 95 495 138 HOH HOH . F 5 HOH A 96 496 140 HOH HOH . F 5 HOH A 97 497 142 HOH HOH . F 5 HOH A 98 498 143 HOH HOH . F 5 HOH A 99 499 145 HOH HOH . F 5 HOH A 100 500 147 HOH HOH . F 5 HOH A 101 501 148 HOH HOH . F 5 HOH A 102 502 149 HOH HOH . F 5 HOH A 103 503 150 HOH HOH . F 5 HOH A 104 504 152 HOH HOH . F 5 HOH A 105 505 153 HOH HOH . F 5 HOH A 106 506 154 HOH HOH . F 5 HOH A 107 507 155 HOH HOH . F 5 HOH A 108 508 156 HOH HOH . F 5 HOH A 109 509 157 HOH HOH . F 5 HOH A 110 510 158 HOH HOH . F 5 HOH A 111 511 159 HOH HOH . F 5 HOH A 112 512 160 HOH HOH . F 5 HOH A 113 513 161 HOH HOH . F 5 HOH A 114 514 162 HOH HOH . F 5 HOH A 115 515 163 HOH HOH . F 5 HOH A 116 516 164 HOH HOH . F 5 HOH A 117 517 165 HOH HOH . F 5 HOH A 118 518 166 HOH HOH . F 5 HOH A 119 519 167 HOH HOH . F 5 HOH A 120 520 168 HOH HOH . F 5 HOH A 121 521 169 HOH HOH . F 5 HOH A 122 522 170 HOH HOH . F 5 HOH A 123 523 171 HOH HOH . F 5 HOH A 124 524 172 HOH HOH . F 5 HOH A 125 525 173 HOH HOH . F 5 HOH A 126 526 174 HOH HOH . F 5 HOH A 127 527 175 HOH HOH . F 5 HOH A 128 528 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 12.977 10.183 19.696 0.8 44.45 ? C1 GOL 304 A 1 HETATM 2 O O1 GOL . . . E 4 12.79 11.354 18.93 0.8 39.54 ? O1 GOL 304 A 1 HETATM 3 C C2 GOL . . . E 4 13.407 9.008 18.813 0.8 46.22 ? C2 GOL 304 A 1 HETATM 4 O O2 GOL . . . E 4 14.054 9.463 17.635 0.8 42.7 ? O2 GOL 304 A 1 HETATM 5 C C3 GOL . . . E 4 14.361 8.122 19.614 0.8 38.73 ? C3 GOL 304 A 1 HETATM 6 O O3 GOL . . . E 4 15.606 8.776 19.742 0.8 37.59 ? O3 GOL 304 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #