data_3V8C
#
_model_server_result.job_id            4gHT7bGFSH6Uca0Fxfkthg 
_model_server_result.datetime_utc      '2024-11-09 01:55:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3v8c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":510}' 
#
_entry.id    3V8C 
#
_exptl.entry_id    3V8C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3V8C 
_cell.length_a            49.54 
_cell.length_b            79.4 
_cell.length_c            139.65 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3V8C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 H N N 
? 4 O N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   MAN 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O2 
_pdbx_entity_branch_link.leaving_atom_id_2           HO2 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C MAN 1 C 1 MAN B 808 MAN 
2 n C NAG 2 C 2 NAG B 809 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 261 1_555 A SG CYS 86 A CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 132 A CYS 367 1_555 A SG CYS 190 A CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 B SG CYS 26 B CYS 261 1_555 B SG CYS 86 B CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 B SG CYS 132 B CYS 367 1_555 B SG CYS 190 B CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
covale ? covale1 C O2 MAN . C MAN 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.532 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 153 n n 
C1 C2 GOL sing 154 n n 
C1 H11 GOL sing 155 n n 
C1 H12 GOL sing 156 n n 
O1 HO1 GOL sing 157 n n 
C2 O2 GOL sing 158 n n 
C2 C3 GOL sing 159 n n 
C2 H2 GOL sing 160 n n 
O2 HO2 GOL sing 161 n n 
C3 O3 GOL sing 162 n n 
C3 H31 GOL sing 163 n n 
C3 H32 GOL sing 164 n n 
O3 HO3 GOL sing 165 n n 
#
_atom_sites.entry_id                     3V8C 
_atom_sites.fract_transf_matrix[1][1]    0.020186 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012594 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007161 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 NAG A 1 501 802 NAG NAG . 
E 3 NAG A 1 502 803 NAG NAG . 
F 4 GOL A 1 509 2 GOL GOL . 
G 5 MAN A 1 503 804 MAN MAN . 
H 4 GOL A 1 510 3 GOL GOL . 
I 5 MAN A 1 504 805 MAN MAN . 
J 3 NAG A 1 505 806 NAG NAG . 
K 6 GAL A 1 506 807 GAL GAL . 
L 5 MAN A 1 507 808 MAN MAN . 
M 3 NAG A 1 508 809 NAG NAG . 
N 3 NAG B 1 501 802 NAG NAG . 
O 4 GOL B 1 509 1 GOL GOL . 
P 3 NAG B 1 502 803 NAG NAG . 
Q 5 MAN B 1 503 804 MAN MAN . 
R 5 MAN B 1 504 805 MAN MAN . 
S 3 NAG B 1 505 806 NAG NAG . 
T 6 GAL B 1 506 807 GAL GAL . 
U 7 HOH A 1 601 1 HOH HOH . 
U 7 HOH A 2 602 4 HOH HOH . 
U 7 HOH A 3 603 5 HOH HOH . 
U 7 HOH A 4 604 6 HOH HOH . 
U 7 HOH A 5 605 11 HOH HOH . 
U 7 HOH A 6 606 13 HOH HOH . 
U 7 HOH A 7 607 14 HOH HOH . 
U 7 HOH A 8 608 16 HOH HOH . 
U 7 HOH A 9 609 17 HOH HOH . 
U 7 HOH A 10 610 18 HOH HOH . 
U 7 HOH A 11 611 19 HOH HOH . 
U 7 HOH A 12 612 20 HOH HOH . 
U 7 HOH A 13 613 22 HOH HOH . 
U 7 HOH A 14 614 30 HOH HOH . 
U 7 HOH A 15 615 31 HOH HOH . 
U 7 HOH A 16 616 32 HOH HOH . 
U 7 HOH A 17 617 33 HOH HOH . 
U 7 HOH A 18 618 35 HOH HOH . 
U 7 HOH A 19 619 36 HOH HOH . 
U 7 HOH A 20 620 38 HOH HOH . 
U 7 HOH A 21 621 39 HOH HOH . 
U 7 HOH A 22 622 40 HOH HOH . 
U 7 HOH A 23 623 46 HOH HOH . 
U 7 HOH A 24 624 48 HOH HOH . 
U 7 HOH A 25 625 51 HOH HOH . 
U 7 HOH A 26 626 52 HOH HOH . 
U 7 HOH A 27 627 53 HOH HOH . 
U 7 HOH A 28 628 54 HOH HOH . 
U 7 HOH A 29 629 60 HOH HOH . 
U 7 HOH A 30 630 61 HOH HOH . 
U 7 HOH A 31 631 63 HOH HOH . 
U 7 HOH A 32 632 64 HOH HOH . 
U 7 HOH A 33 633 65 HOH HOH . 
U 7 HOH A 34 634 67 HOH HOH . 
U 7 HOH A 35 635 75 HOH HOH . 
U 7 HOH A 36 636 83 HOH HOH . 
U 7 HOH A 37 637 84 HOH HOH . 
U 7 HOH A 38 638 85 HOH HOH . 
U 7 HOH A 39 639 86 HOH HOH . 
U 7 HOH A 40 640 87 HOH HOH . 
U 7 HOH A 41 641 88 HOH HOH . 
U 7 HOH A 42 642 89 HOH HOH . 
U 7 HOH A 43 643 92 HOH HOH . 
U 7 HOH A 44 644 93 HOH HOH . 
U 7 HOH A 45 645 95 HOH HOH . 
U 7 HOH A 46 646 96 HOH HOH . 
U 7 HOH A 47 647 97 HOH HOH . 
U 7 HOH A 48 648 98 HOH HOH . 
U 7 HOH A 49 649 448 HOH HOH . 
U 7 HOH A 50 650 449 HOH HOH . 
V 7 HOH B 1 601 7 HOH HOH . 
V 7 HOH B 2 602 8 HOH HOH . 
V 7 HOH B 3 603 9 HOH HOH . 
V 7 HOH B 4 604 10 HOH HOH . 
V 7 HOH B 5 605 12 HOH HOH . 
V 7 HOH B 6 606 15 HOH HOH . 
V 7 HOH B 7 607 21 HOH HOH . 
V 7 HOH B 8 608 23 HOH HOH . 
V 7 HOH B 9 609 24 HOH HOH . 
V 7 HOH B 10 610 25 HOH HOH . 
V 7 HOH B 11 611 26 HOH HOH . 
V 7 HOH B 12 612 27 HOH HOH . 
V 7 HOH B 13 613 28 HOH HOH . 
V 7 HOH B 14 614 29 HOH HOH . 
V 7 HOH B 15 615 34 HOH HOH . 
V 7 HOH B 16 616 37 HOH HOH . 
V 7 HOH B 17 617 41 HOH HOH . 
V 7 HOH B 18 618 42 HOH HOH . 
V 7 HOH B 19 619 43 HOH HOH . 
V 7 HOH B 20 620 44 HOH HOH . 
V 7 HOH B 21 621 45 HOH HOH . 
V 7 HOH B 22 622 47 HOH HOH . 
V 7 HOH B 23 623 49 HOH HOH . 
V 7 HOH B 24 624 50 HOH HOH . 
V 7 HOH B 25 625 55 HOH HOH . 
V 7 HOH B 26 626 56 HOH HOH . 
V 7 HOH B 27 627 57 HOH HOH . 
V 7 HOH B 28 628 58 HOH HOH . 
V 7 HOH B 29 629 59 HOH HOH . 
V 7 HOH B 30 630 62 HOH HOH . 
V 7 HOH B 31 631 66 HOH HOH . 
V 7 HOH B 32 632 68 HOH HOH . 
V 7 HOH B 33 633 69 HOH HOH . 
V 7 HOH B 34 634 70 HOH HOH . 
V 7 HOH B 35 635 71 HOH HOH . 
V 7 HOH B 36 636 72 HOH HOH . 
V 7 HOH B 37 637 73 HOH HOH . 
V 7 HOH B 38 638 74 HOH HOH . 
V 7 HOH B 39 639 76 HOH HOH . 
V 7 HOH B 40 640 77 HOH HOH . 
V 7 HOH B 41 641 78 HOH HOH . 
V 7 HOH B 42 642 79 HOH HOH . 
V 7 HOH B 43 643 80 HOH HOH . 
V 7 HOH B 44 644 81 HOH HOH . 
V 7 HOH B 45 645 82 HOH HOH . 
V 7 HOH B 46 646 90 HOH HOH . 
V 7 HOH B 47 647 91 HOH HOH . 
V 7 HOH B 48 648 94 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 4 19.846 9.105 61.167 1 80.77 ? C1 GOL 510 A 1 
HETATM 2 O O1 GOL . . . H 4 19.534 8.537 59.908 1 80.4 ? O1 GOL 510 A 1 
HETATM 3 C C2 GOL . . . H 4 18.699 8.857 62.146 1 80.6 ? C2 GOL 510 A 1 
HETATM 4 O O2 GOL . . . H 4 17.469 8.929 61.46 1 80.88 ? O2 GOL 510 A 1 
HETATM 5 C C3 GOL . . . H 4 18.833 7.473 62.771 1 79.65 ? C3 GOL 510 A 1 
HETATM 6 O O3 GOL . . . H 4 19.321 7.649 64.08 1 79.14 ? O3 GOL 510 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#