data_3V8F
#
_model_server_result.job_id            gOBVcd48wMpaLpxAk9tVZQ 
_model_server_result.datetime_utc      '2025-03-31 15:08:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3v8f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":903}' 
#
_entry.id    3V8F 
#
_exptl.entry_id    3V8F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.08 
_cell.angle_gamma         90 
_cell.entry_id            3V8F 
_cell.length_a            124.3 
_cell.length_b            199.81 
_cell.length_c            111.251 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3V8F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 I N N 
? 3 J N N 
? 3 M N N 
? 3 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 216 A CYS 216 1_555 G HG HG . A HG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc2 A OG SER 278 A SER 278 1_555 E NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.978 ? 
metalc ? metalc3 A O GLY 306 A GLY 306 1_555 E NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc4 A O THR 308 A THR 308 1_555 F NA NA . A NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc5 A O SER 349 A SER 349 1_555 F NA NA . A NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc6 A O THR 352 A THR 352 1_555 F NA NA . A NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc7 A SG CYS 385 A CYS 385 1_555 G HG HG . A HG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
metalc ? metalc8 A O ASN 401 A ASN 401 1_555 E NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? 
metalc ? metalc9 A OD2 ASP 405 A ASP 405 1_555 E NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? 
metalc ? metalc10 B SG CYS 216 B CYS 216 1_555 K HG HG . B HG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc11 B OG SER 278 B SER 278 1_555 I NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? 
metalc ? metalc12 B O GLY 306 B GLY 306 1_555 I NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc13 B O ALA 307 B ALA 307 1_555 I NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.2 ? 
metalc ? metalc14 B O THR 308 B THR 308 1_555 J NA NA . B NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc15 B O SER 349 B SER 349 1_555 J NA NA . B NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc16 B O THR 352 B THR 352 1_555 J NA NA . B NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc17 B SG CYS 385 B CYS 385 1_555 K HG HG . B HG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
metalc ? metalc18 B O ASN 401 B ASN 401 1_555 I NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? 
metalc ? metalc19 B OD2 ASP 405 B ASP 405 1_555 I NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? 
metalc ? metalc20 C SG CYS 216 C CYS 216 1_555 O HG HG . C HG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc21 C OG SER 278 C SER 278 1_555 M NA NA . C NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? 
metalc ? metalc22 C O GLY 306 C GLY 306 1_555 M NA NA . C NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc23 C O THR 308 C THR 308 1_555 N NA NA . C NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc24 C O SER 349 C SER 349 1_555 N NA NA . C NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc25 C O THR 352 C THR 352 1_555 N NA NA . C NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? 
metalc ? metalc26 C SG CYS 385 C CYS 385 1_555 O HG HG . C HG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc27 C O ASN 401 C ASN 401 1_555 M NA NA . C NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? 
metalc ? metalc28 C OD2 ASP 405 C ASP 405 1_555 M NA NA . C NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.07 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3V8F 
_atom_sites.fract_transf_matrix[1][1]    0.008045 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004113 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005005 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010095 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ASP A 1 901 417 ASP ASP . 
E 3 NA A 1 902 418 NA NA . 
F 3 NA A 1 903 419 NA NA . 
G 4 HG A 1 904 420 HG HG . 
H 2 ASP B 1 901 417 ASP ASP . 
I 3 NA B 1 902 418 NA NA . 
J 3 NA B 1 903 419 NA NA . 
K 4 HG B 1 904 420 HG HG . 
L 2 ASP C 1 901 417 ASP ASP . 
M 3 NA C 1 902 418 NA NA . 
N 3 NA C 1 903 419 NA NA . 
O 4 HG C 1 904 420 HG HG . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               1.704 
_atom_site.Cartn_y               65.89 
_atom_site.Cartn_z               33.953 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        258.69 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           903 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#