data_3V8K # _model_server_result.job_id qJBzMOTZNIm_SLAu4xO78Q _model_server_result.datetime_utc '2025-01-11 11:56:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v8k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 3V8K # _exptl.entry_id 3V8K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.311 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BIOTIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V8K _cell.length_a 94.266 _cell.length_b 94.266 _cell.length_c 130.885 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V8K _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 94.266 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N2 O3 S' _chem_comp.formula_weight 244.311 _chem_comp.id BTN _chem_comp.mon_nstd_flag . _chem_comp.name BIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 BTN doub 70 n n C11 O12 BTN sing 71 n n C11 C10 BTN sing 72 n n O12 HO2 BTN sing 73 n n C10 C9 BTN sing 74 n n C10 H101 BTN sing 75 n n C10 H102 BTN sing 76 n n C9 C8 BTN sing 77 n n C9 H91 BTN sing 78 n n C9 H92 BTN sing 79 n n C8 C7 BTN sing 80 n n C8 H81 BTN sing 81 n n C8 H82 BTN sing 82 n n C7 C2 BTN sing 83 n n C7 H71 BTN sing 84 n n C7 H72 BTN sing 85 n n C2 S1 BTN sing 86 n n C2 C4 BTN sing 87 n n C2 H2 BTN sing 88 n n S1 C6 BTN sing 89 n n C6 C5 BTN sing 90 n n C6 H61 BTN sing 91 n n C6 H62 BTN sing 92 n n C5 N1 BTN sing 93 n n C5 C4 BTN sing 94 n n C5 H5 BTN sing 95 n n N1 C3 BTN sing 96 n n N1 HN1 BTN sing 97 n n C3 O3 BTN doub 98 n n C3 N2 BTN sing 99 n n N2 C4 BTN sing 100 n n N2 HN2 BTN sing 101 n n C4 H4 BTN sing 102 n n # _atom_sites.entry_id 3V8K _atom_sites.fract_transf_matrix[1][1] 0.010608 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BTN A 1 500 500 BTN BT5 . C 3 HOH A 1 601 1 HOH HOH . C 3 HOH A 2 602 2 HOH HOH . C 3 HOH A 3 603 3 HOH HOH . C 3 HOH A 4 604 4 HOH HOH . C 3 HOH A 5 605 5 HOH HOH . C 3 HOH A 6 606 6 HOH HOH . C 3 HOH A 7 607 7 HOH HOH . C 3 HOH A 8 608 8 HOH HOH . C 3 HOH A 9 609 9 HOH HOH . C 3 HOH A 10 610 10 HOH HOH . C 3 HOH A 11 611 11 HOH HOH . C 3 HOH A 12 612 12 HOH HOH . C 3 HOH A 13 613 13 HOH HOH . C 3 HOH A 14 614 14 HOH HOH . C 3 HOH A 15 615 15 HOH HOH . C 3 HOH A 16 616 16 HOH HOH . C 3 HOH A 17 617 17 HOH HOH . C 3 HOH A 18 618 18 HOH HOH . C 3 HOH A 19 619 19 HOH HOH . C 3 HOH A 20 620 20 HOH HOH . C 3 HOH A 21 621 22 HOH HOH . C 3 HOH A 22 622 23 HOH HOH . C 3 HOH A 23 623 25 HOH HOH . C 3 HOH A 24 624 26 HOH HOH . C 3 HOH A 25 625 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 BTN . . . B 2 50.655 17.868 18.143 1 44.7 ? C11 BTN 500 A 1 HETATM 2 O O11 BTN . . . B 2 50.54 18.344 16.984 1 45.14 ? O11 BTN 500 A 1 HETATM 3 O O12 BTN . . . B 2 51.78 17.466 18.537 1 45.39 ? O12 BTN 500 A 1 HETATM 4 C C10 BTN . . . B 2 49.56 17.792 18.953 1 43.53 ? C10 BTN 500 A 1 HETATM 5 C C9 BTN . . . B 2 49.611 17.229 20.371 1 42.29 ? C9 BTN 500 A 1 HETATM 6 C C8 BTN . . . B 2 48.263 16.841 21.004 1 40.32 ? C8 BTN 500 A 1 HETATM 7 C C7 BTN . . . B 2 48.386 16.749 22.535 1 37.79 ? C7 BTN 500 A 1 HETATM 8 C C2 BTN . . . B 2 47.062 16.465 23.263 1 36.36 ? C2 BTN 500 A 1 HETATM 9 S S1 BTN . . . B 2 46.909 17.364 24.79 1 35.84 ? S1 BTN 500 A 1 HETATM 10 C C6 BTN . . . B 2 45.723 16.226 25.416 1 34.09 ? C6 BTN 500 A 1 HETATM 11 C C5 BTN . . . B 2 46.148 14.857 24.925 1 34.01 ? C5 BTN 500 A 1 HETATM 12 N N1 BTN . . . B 2 47.17 14.436 25.873 1 33.95 ? N1 BTN 500 A 1 HETATM 13 C C3 BTN . . . B 2 48.335 14.191 25.286 1 34.23 ? C3 BTN 500 A 1 HETATM 14 O O3 BTN . . . B 2 49.294 13.646 25.808 1 33.35 ? O3 BTN 500 A 1 HETATM 15 N N2 BTN . . . B 2 48.294 14.599 24.029 1 34.54 ? N2 BTN 500 A 1 HETATM 16 C C4 BTN . . . B 2 46.946 14.996 23.626 1 34.99 ? C4 BTN 500 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #