data_3V8M # _model_server_result.job_id CFlKC6vPXaeaNrDdKAQD1A _model_server_result.datetime_utc '2024-11-28 04:22:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v8m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 3V8M # _exptl.entry_id 3V8M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V8M _cell.length_a 62.528 _cell.length_b 75.654 _cell.length_c 118.241 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V8M _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.528 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.528 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 3V8M _atom_sites.fract_transf_matrix[1][1] 0.015993 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013218 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008457 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Z8B A 1 301 1 Z8B Z8B . C 2 Z8B A 1 302 2 Z8B Z8B . D 3 CIT A 1 303 1 CIT CIT . E 4 HOH A 1 401 1 HOH HOH . E 4 HOH A 2 402 2 HOH HOH . E 4 HOH A 3 403 3 HOH HOH . E 4 HOH A 4 404 4 HOH HOH . E 4 HOH A 5 405 5 HOH HOH . E 4 HOH A 6 406 6 HOH HOH . E 4 HOH A 7 407 7 HOH HOH . E 4 HOH A 8 408 8 HOH HOH . E 4 HOH A 9 409 9 HOH HOH . E 4 HOH A 10 410 10 HOH HOH . E 4 HOH A 11 411 12 HOH HOH . E 4 HOH A 12 412 13 HOH HOH . E 4 HOH A 13 413 14 HOH HOH . E 4 HOH A 14 414 16 HOH HOH . E 4 HOH A 15 415 18 HOH HOH . E 4 HOH A 16 416 20 HOH HOH . E 4 HOH A 17 417 23 HOH HOH . E 4 HOH A 18 418 25 HOH HOH . E 4 HOH A 19 419 26 HOH HOH . E 4 HOH A 20 420 27 HOH HOH . E 4 HOH A 21 421 28 HOH HOH . E 4 HOH A 22 422 30 HOH HOH . E 4 HOH A 23 423 33 HOH HOH . E 4 HOH A 24 424 34 HOH HOH . E 4 HOH A 25 425 36 HOH HOH . E 4 HOH A 26 426 37 HOH HOH . E 4 HOH A 27 427 38 HOH HOH . E 4 HOH A 28 428 40 HOH HOH . E 4 HOH A 29 429 42 HOH HOH . E 4 HOH A 30 430 44 HOH HOH . E 4 HOH A 31 431 45 HOH HOH . E 4 HOH A 32 432 49 HOH HOH . E 4 HOH A 33 433 52 HOH HOH . E 4 HOH A 34 434 53 HOH HOH . E 4 HOH A 35 435 57 HOH HOH . E 4 HOH A 36 436 62 HOH HOH . E 4 HOH A 37 437 64 HOH HOH . E 4 HOH A 38 438 65 HOH HOH . E 4 HOH A 39 439 67 HOH HOH . E 4 HOH A 40 440 68 HOH HOH . E 4 HOH A 41 441 69 HOH HOH . E 4 HOH A 42 442 70 HOH HOH . E 4 HOH A 43 443 71 HOH HOH . E 4 HOH A 44 444 72 HOH HOH . E 4 HOH A 45 445 73 HOH HOH . E 4 HOH A 46 446 74 HOH HOH . E 4 HOH A 47 447 75 HOH HOH . E 4 HOH A 48 448 76 HOH HOH . E 4 HOH A 49 449 77 HOH HOH . E 4 HOH A 50 450 78 HOH HOH . E 4 HOH A 51 451 79 HOH HOH . E 4 HOH A 52 452 80 HOH HOH . E 4 HOH A 53 453 81 HOH HOH . E 4 HOH A 54 454 82 HOH HOH . E 4 HOH A 55 455 83 HOH HOH . E 4 HOH A 56 456 84 HOH HOH . E 4 HOH A 57 457 85 HOH HOH . E 4 HOH A 58 458 86 HOH HOH . E 4 HOH A 59 459 87 HOH HOH . E 4 HOH A 60 460 88 HOH HOH . E 4 HOH A 61 461 89 HOH HOH . E 4 HOH A 62 462 90 HOH HOH . E 4 HOH A 63 463 92 HOH HOH . E 4 HOH A 64 464 93 HOH HOH . E 4 HOH A 65 465 95 HOH HOH . E 4 HOH A 66 466 96 HOH HOH . E 4 HOH A 67 467 97 HOH HOH . E 4 HOH A 68 468 98 HOH HOH . E 4 HOH A 69 469 99 HOH HOH . E 4 HOH A 70 470 100 HOH HOH . E 4 HOH A 71 471 101 HOH HOH . E 4 HOH A 72 472 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . D 3 31.516 23.946 14.281 0.95 37.62 ? C1 CIT 303 A 1 HETATM 2 O O1 CIT . . . D 3 31.196 22.769 14.019 0.95 40.94 ? O1 CIT 303 A 1 HETATM 3 O O2 CIT . . . D 3 32.718 24.196 14.508 0.95 41.57 ? O2 CIT 303 A 1 HETATM 4 C C2 CIT . . . D 3 30.489 25.053 14.323 0.95 40.36 ? C2 CIT 303 A 1 HETATM 5 C C3 CIT . . . D 3 29.256 24.7 15.157 0.95 44.44 ? C3 CIT 303 A 1 HETATM 6 O O7 CIT . . . D 3 29.674 24.302 16.488 0.95 47.84 ? O7 CIT 303 A 1 HETATM 7 C C4 CIT . . . D 3 28.324 25.902 15.263 0.95 45.64 ? C4 CIT 303 A 1 HETATM 8 C C5 CIT . . . D 3 28.994 27.023 16.028 0.95 51.2 ? C5 CIT 303 A 1 HETATM 9 O O3 CIT . . . D 3 29.317 28.077 15.438 0.95 53.66 ? O3 CIT 303 A 1 HETATM 10 O O4 CIT . . . D 3 29.226 26.92 17.255 0.95 51.76 ? O4 CIT 303 A 1 HETATM 11 C C6 CIT . . . D 3 28.501 23.535 14.54 0.95 45.08 ? C6 CIT 303 A 1 HETATM 12 O O5 CIT . . . D 3 28.564 22.391 15.042 0.95 46.79 ? O5 CIT 303 A 1 HETATM 13 O O6 CIT . . . D 3 27.818 23.714 13.509 0.95 41.76 ? O6 CIT 303 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 13 #