data_3V8N # _model_server_result.job_id ABqG0TIH2fFHK29DN6dRmA _model_server_result.datetime_utc '2024-11-08 20:56:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v8n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 3V8N # _exptl.entry_id 3V8N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V8N _cell.length_a 63.063 _cell.length_b 75.966 _cell.length_c 119.012 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V8N _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 63.063 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 63.063 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 158 n n C1 O2 CIT sing 159 n n C1 C2 CIT sing 160 n n O2 HO2 CIT sing 161 n n C2 C3 CIT sing 162 n n C2 H21 CIT sing 163 n n C2 H22 CIT sing 164 n n C3 O7 CIT sing 165 n n C3 C4 CIT sing 166 n n C3 C6 CIT sing 167 n n O7 HO7 CIT sing 168 n n C4 C5 CIT sing 169 n n C4 H41 CIT sing 170 n n C4 H42 CIT sing 171 n n C5 O3 CIT doub 172 n n C5 O4 CIT sing 173 n n O4 HO4 CIT sing 174 n n C6 O5 CIT doub 175 n n C6 O6 CIT sing 176 n n O6 HO6 CIT sing 177 n n # _atom_sites.entry_id 3V8N _atom_sites.fract_transf_matrix[1][1] 0.015857 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013164 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5NB A 1 301 1 5NB 5NB . C 3 5CI A 1 302 2 5CI 5CI . D 4 CIT A 1 303 1 CIT CIT . E 5 HOH A 1 401 1 HOH HOH . E 5 HOH A 2 402 3 HOH HOH . E 5 HOH A 3 403 5 HOH HOH . E 5 HOH A 4 404 6 HOH HOH . E 5 HOH A 5 405 8 HOH HOH . E 5 HOH A 6 406 9 HOH HOH . E 5 HOH A 7 407 10 HOH HOH . E 5 HOH A 8 408 11 HOH HOH . E 5 HOH A 9 409 12 HOH HOH . E 5 HOH A 10 410 13 HOH HOH . E 5 HOH A 11 411 14 HOH HOH . E 5 HOH A 12 412 16 HOH HOH . E 5 HOH A 13 413 17 HOH HOH . E 5 HOH A 14 414 18 HOH HOH . E 5 HOH A 15 415 19 HOH HOH . E 5 HOH A 16 416 20 HOH HOH . E 5 HOH A 17 417 21 HOH HOH . E 5 HOH A 18 418 22 HOH HOH . E 5 HOH A 19 419 23 HOH HOH . E 5 HOH A 20 420 26 HOH HOH . E 5 HOH A 21 421 27 HOH HOH . E 5 HOH A 22 422 30 HOH HOH . E 5 HOH A 23 423 32 HOH HOH . E 5 HOH A 24 424 34 HOH HOH . E 5 HOH A 25 425 35 HOH HOH . E 5 HOH A 26 426 37 HOH HOH . E 5 HOH A 27 427 41 HOH HOH . E 5 HOH A 28 428 43 HOH HOH . E 5 HOH A 29 429 44 HOH HOH . E 5 HOH A 30 430 45 HOH HOH . E 5 HOH A 31 431 46 HOH HOH . E 5 HOH A 32 432 47 HOH HOH . E 5 HOH A 33 433 48 HOH HOH . E 5 HOH A 34 434 50 HOH HOH . E 5 HOH A 35 435 52 HOH HOH . E 5 HOH A 36 436 54 HOH HOH . E 5 HOH A 37 437 57 HOH HOH . E 5 HOH A 38 438 58 HOH HOH . E 5 HOH A 39 439 61 HOH HOH . E 5 HOH A 40 440 62 HOH HOH . E 5 HOH A 41 441 65 HOH HOH . E 5 HOH A 42 442 66 HOH HOH . E 5 HOH A 43 443 68 HOH HOH . E 5 HOH A 44 444 70 HOH HOH . E 5 HOH A 45 445 72 HOH HOH . E 5 HOH A 46 446 73 HOH HOH . E 5 HOH A 47 447 76 HOH HOH . E 5 HOH A 48 448 77 HOH HOH . E 5 HOH A 49 449 78 HOH HOH . E 5 HOH A 50 450 79 HOH HOH . E 5 HOH A 51 451 82 HOH HOH . E 5 HOH A 52 452 83 HOH HOH . E 5 HOH A 53 453 84 HOH HOH . E 5 HOH A 54 454 85 HOH HOH . E 5 HOH A 55 455 87 HOH HOH . E 5 HOH A 56 456 91 HOH HOH . E 5 HOH A 57 457 92 HOH HOH . E 5 HOH A 58 458 93 HOH HOH . E 5 HOH A 59 459 94 HOH HOH . E 5 HOH A 60 460 95 HOH HOH . E 5 HOH A 61 461 101 HOH HOH . E 5 HOH A 62 462 102 HOH HOH . E 5 HOH A 63 463 103 HOH HOH . E 5 HOH A 64 464 104 HOH HOH . E 5 HOH A 65 465 105 HOH HOH . E 5 HOH A 66 466 106 HOH HOH . E 5 HOH A 67 467 107 HOH HOH . E 5 HOH A 68 468 108 HOH HOH . E 5 HOH A 69 469 109 HOH HOH . E 5 HOH A 70 470 110 HOH HOH . E 5 HOH A 71 471 111 HOH HOH . E 5 HOH A 72 472 112 HOH HOH . E 5 HOH A 73 473 113 HOH HOH . E 5 HOH A 74 474 114 HOH HOH . E 5 HOH A 75 475 115 HOH HOH . E 5 HOH A 76 476 116 HOH HOH . E 5 HOH A 77 477 117 HOH HOH . E 5 HOH A 78 478 118 HOH HOH . E 5 HOH A 79 479 119 HOH HOH . E 5 HOH A 80 480 120 HOH HOH . E 5 HOH A 81 481 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . D 4 32.033 24.012 14.395 0.8 36.47 ? C1 CIT 303 A 1 HETATM 2 O O1 CIT . . . D 4 31.705 22.865 14.025 0.8 39.76 ? O1 CIT 303 A 1 HETATM 3 O O2 CIT . . . D 4 33.217 24.206 14.743 0.8 38.79 ? O2 CIT 303 A 1 HETATM 4 C C2 CIT . . . D 4 31.037 25.149 14.421 0.8 38.05 ? C2 CIT 303 A 1 HETATM 5 C C3 CIT . . . D 4 29.775 24.795 15.207 0.8 43.98 ? C3 CIT 303 A 1 HETATM 6 O O7 CIT . . . D 4 30.153 24.463 16.569 0.8 44.52 ? O7 CIT 303 A 1 HETATM 7 C C4 CIT . . . D 4 28.794 25.963 15.212 0.8 43.28 ? C4 CIT 303 A 1 HETATM 8 C C5 CIT . . . D 4 29.335 27.107 16.039 0.8 50.12 ? C5 CIT 303 A 1 HETATM 9 O O3 CIT . . . D 4 29.668 28.179 15.492 0.8 50.87 ? O3 CIT 303 A 1 HETATM 10 O O4 CIT . . . D 4 29.447 27.007 17.283 0.8 53.83 ? O4 CIT 303 A 1 HETATM 11 C C6 CIT . . . D 4 29.091 23.583 14.595 0.8 48.69 ? C6 CIT 303 A 1 HETATM 12 O O5 CIT . . . D 4 29.335 22.429 15.002 0.8 55.33 ? O5 CIT 303 A 1 HETATM 13 O O6 CIT . . . D 4 28.28 23.729 13.659 0.8 46.15 ? O6 CIT 303 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #