data_3V8Q # _model_server_result.job_id oq4oOWnlUkbStU0gVV5BNA _model_server_result.datetime_utc '2024-11-24 13:51:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v8q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 3V8Q # _exptl.entry_id 3V8Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V8Q _cell.length_a 63.169 _cell.length_b 75.06 _cell.length_c 118.588 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V8Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 63.169 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 63.169 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 105 n n C1 O2 CIT sing 106 n n C1 C2 CIT sing 107 n n O2 HO2 CIT sing 108 n n C2 C3 CIT sing 109 n n C2 H21 CIT sing 110 n n C2 H22 CIT sing 111 n n C3 O7 CIT sing 112 n n C3 C4 CIT sing 113 n n C3 C6 CIT sing 114 n n O7 HO7 CIT sing 115 n n C4 C5 CIT sing 116 n n C4 H41 CIT sing 117 n n C4 H42 CIT sing 118 n n C5 O3 CIT doub 119 n n C5 O4 CIT sing 120 n n O4 HO4 CIT sing 121 n n C6 O5 CIT doub 122 n n C6 O6 CIT sing 123 n n O6 HO6 CIT sing 124 n n # _atom_sites.entry_id 3V8Q _atom_sites.fract_transf_matrix[1][1] 0.015831 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013323 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5N5 A 1 301 1 5N5 5N5 . C 3 GOL A 1 302 1 GOL GOL . D 4 CIT A 1 303 1 CIT CIT . E 5 HOH A 1 401 1 HOH HOH . E 5 HOH A 2 402 2 HOH HOH . E 5 HOH A 3 403 4 HOH HOH . E 5 HOH A 4 404 5 HOH HOH . E 5 HOH A 5 405 6 HOH HOH . E 5 HOH A 6 406 7 HOH HOH . E 5 HOH A 7 407 8 HOH HOH . E 5 HOH A 8 408 9 HOH HOH . E 5 HOH A 9 409 10 HOH HOH . E 5 HOH A 10 410 11 HOH HOH . E 5 HOH A 11 411 12 HOH HOH . E 5 HOH A 12 412 13 HOH HOH . E 5 HOH A 13 413 14 HOH HOH . E 5 HOH A 14 414 15 HOH HOH . E 5 HOH A 15 415 16 HOH HOH . E 5 HOH A 16 416 17 HOH HOH . E 5 HOH A 17 417 18 HOH HOH . E 5 HOH A 18 418 19 HOH HOH . E 5 HOH A 19 419 20 HOH HOH . E 5 HOH A 20 420 21 HOH HOH . E 5 HOH A 21 421 22 HOH HOH . E 5 HOH A 22 422 23 HOH HOH . E 5 HOH A 23 423 24 HOH HOH . E 5 HOH A 24 424 25 HOH HOH . E 5 HOH A 25 425 26 HOH HOH . E 5 HOH A 26 426 27 HOH HOH . E 5 HOH A 27 427 28 HOH HOH . E 5 HOH A 28 428 29 HOH HOH . E 5 HOH A 29 429 30 HOH HOH . E 5 HOH A 30 430 31 HOH HOH . E 5 HOH A 31 431 32 HOH HOH . E 5 HOH A 32 432 33 HOH HOH . E 5 HOH A 33 433 34 HOH HOH . E 5 HOH A 34 434 35 HOH HOH . E 5 HOH A 35 435 36 HOH HOH . E 5 HOH A 36 436 37 HOH HOH . E 5 HOH A 37 437 38 HOH HOH . E 5 HOH A 38 438 39 HOH HOH . E 5 HOH A 39 439 40 HOH HOH . E 5 HOH A 40 440 41 HOH HOH . E 5 HOH A 41 441 43 HOH HOH . E 5 HOH A 42 442 44 HOH HOH . E 5 HOH A 43 443 45 HOH HOH . E 5 HOH A 44 444 46 HOH HOH . E 5 HOH A 45 445 47 HOH HOH . E 5 HOH A 46 446 49 HOH HOH . E 5 HOH A 47 447 50 HOH HOH . E 5 HOH A 48 448 51 HOH HOH . E 5 HOH A 49 449 52 HOH HOH . E 5 HOH A 50 450 53 HOH HOH . E 5 HOH A 51 451 54 HOH HOH . E 5 HOH A 52 452 55 HOH HOH . E 5 HOH A 53 453 56 HOH HOH . E 5 HOH A 54 454 57 HOH HOH . E 5 HOH A 55 455 58 HOH HOH . E 5 HOH A 56 456 59 HOH HOH . E 5 HOH A 57 457 60 HOH HOH . E 5 HOH A 58 458 61 HOH HOH . E 5 HOH A 59 459 63 HOH HOH . E 5 HOH A 60 460 64 HOH HOH . E 5 HOH A 61 461 65 HOH HOH . E 5 HOH A 62 462 66 HOH HOH . E 5 HOH A 63 463 67 HOH HOH . E 5 HOH A 64 464 68 HOH HOH . E 5 HOH A 65 465 70 HOH HOH . E 5 HOH A 66 466 71 HOH HOH . E 5 HOH A 67 467 72 HOH HOH . E 5 HOH A 68 468 73 HOH HOH . E 5 HOH A 69 469 74 HOH HOH . E 5 HOH A 70 470 76 HOH HOH . E 5 HOH A 71 471 77 HOH HOH . E 5 HOH A 72 472 78 HOH HOH . E 5 HOH A 73 473 79 HOH HOH . E 5 HOH A 74 474 80 HOH HOH . E 5 HOH A 75 475 81 HOH HOH . E 5 HOH A 76 476 82 HOH HOH . E 5 HOH A 77 477 83 HOH HOH . E 5 HOH A 78 478 84 HOH HOH . E 5 HOH A 79 479 85 HOH HOH . E 5 HOH A 80 480 86 HOH HOH . E 5 HOH A 81 481 87 HOH HOH . E 5 HOH A 82 482 88 HOH HOH . E 5 HOH A 83 483 89 HOH HOH . E 5 HOH A 84 484 90 HOH HOH . E 5 HOH A 85 485 91 HOH HOH . E 5 HOH A 86 486 92 HOH HOH . E 5 HOH A 87 487 93 HOH HOH . E 5 HOH A 88 488 94 HOH HOH . E 5 HOH A 89 489 95 HOH HOH . E 5 HOH A 90 490 96 HOH HOH . E 5 HOH A 91 491 98 HOH HOH . E 5 HOH A 92 492 99 HOH HOH . E 5 HOH A 93 493 100 HOH HOH . E 5 HOH A 94 494 101 HOH HOH . E 5 HOH A 95 495 102 HOH HOH . E 5 HOH A 96 496 103 HOH HOH . E 5 HOH A 97 497 104 HOH HOH . E 5 HOH A 98 498 105 HOH HOH . E 5 HOH A 99 499 106 HOH HOH . E 5 HOH A 100 500 107 HOH HOH . E 5 HOH A 101 501 108 HOH HOH . E 5 HOH A 102 502 109 HOH HOH . E 5 HOH A 103 503 110 HOH HOH . E 5 HOH A 104 504 111 HOH HOH . E 5 HOH A 105 505 112 HOH HOH . E 5 HOH A 106 506 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . D 4 28.984 26.313 16.869 0.96 70.23 ? C1 CIT 303 A 1 HETATM 2 O O1 CIT . . . D 4 28.222 25.701 17.648 0.96 74.33 ? O1 CIT 303 A 1 HETATM 3 O O2 CIT . . . D 4 29.736 27.199 17.329 0.96 71.23 ? O2 CIT 303 A 1 HETATM 4 C C2 CIT . . . D 4 28.998 26.001 15.391 0.96 64.65 ? C2 CIT 303 A 1 HETATM 5 C C3 CIT . . . D 4 29.7 24.67 15.135 0.96 61.55 ? C3 CIT 303 A 1 HETATM 6 O O7 CIT . . . D 4 30.38 24.264 16.35 0.96 64.4 ? O7 CIT 303 A 1 HETATM 7 C C4 CIT . . . D 4 30.707 24.789 13.997 0.96 57.03 ? C4 CIT 303 A 1 HETATM 8 C C5 CIT . . . D 4 31.933 23.971 14.327 0.96 55.1 ? C5 CIT 303 A 1 HETATM 9 O O3 CIT . . . D 4 31.907 22.73 14.188 0.96 45.6 ? O3 CIT 303 A 1 HETATM 10 O O4 CIT . . . D 4 32.985 24.511 14.731 0.96 55.87 ? O4 CIT 303 A 1 HETATM 11 C C6 CIT . . . D 4 28.673 23.611 14.773 0.96 58.62 ? C6 CIT 303 A 1 HETATM 12 O O5 CIT . . . D 4 27.94 23.098 15.647 0.96 60.21 ? O5 CIT 303 A 1 HETATM 13 O O6 CIT . . . D 4 28.548 23.251 13.582 0.96 53.77 ? O6 CIT 303 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 431 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #