data_3V8R # _model_server_result.job_id gMo0rMNf_hLAtajXgEpaWg _model_server_result.datetime_utc '2024-11-28 06:26:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v8r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 3V8R # _exptl.entry_id 3V8R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V8R _cell.length_a 62.718 _cell.length_b 77.135 _cell.length_c 118.358 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V8R _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.718 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.718 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 105 n n C1 O2 CIT sing 106 n n C1 C2 CIT sing 107 n n O2 HO2 CIT sing 108 n n C2 C3 CIT sing 109 n n C2 H21 CIT sing 110 n n C2 H22 CIT sing 111 n n C3 O7 CIT sing 112 n n C3 C4 CIT sing 113 n n C3 C6 CIT sing 114 n n O7 HO7 CIT sing 115 n n C4 C5 CIT sing 116 n n C4 H41 CIT sing 117 n n C4 H42 CIT sing 118 n n C5 O3 CIT doub 119 n n C5 O4 CIT sing 120 n n O4 HO4 CIT sing 121 n n C6 O5 CIT doub 122 n n C6 O6 CIT sing 123 n n O6 HO6 CIT sing 124 n n # _atom_sites.entry_id 3V8R _atom_sites.fract_transf_matrix[1][1] 0.015944 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008449 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5NB A 1 301 1 5NB 5NB . C 2 5NB A 1 302 2 5NB 5NB . D 3 CIT A 1 303 1 CIT CIT . E 4 HOH A 1 401 1 HOH HOH . E 4 HOH A 2 402 2 HOH HOH . E 4 HOH A 3 403 3 HOH HOH . E 4 HOH A 4 404 4 HOH HOH . E 4 HOH A 5 405 5 HOH HOH . E 4 HOH A 6 406 6 HOH HOH . E 4 HOH A 7 407 7 HOH HOH . E 4 HOH A 8 408 8 HOH HOH . E 4 HOH A 9 409 11 HOH HOH . E 4 HOH A 10 410 12 HOH HOH . E 4 HOH A 11 411 13 HOH HOH . E 4 HOH A 12 412 14 HOH HOH . E 4 HOH A 13 413 15 HOH HOH . E 4 HOH A 14 414 16 HOH HOH . E 4 HOH A 15 415 17 HOH HOH . E 4 HOH A 16 416 18 HOH HOH . E 4 HOH A 17 417 19 HOH HOH . E 4 HOH A 18 418 20 HOH HOH . E 4 HOH A 19 419 22 HOH HOH . E 4 HOH A 20 420 23 HOH HOH . E 4 HOH A 21 421 24 HOH HOH . E 4 HOH A 22 422 25 HOH HOH . E 4 HOH A 23 423 26 HOH HOH . E 4 HOH A 24 424 27 HOH HOH . E 4 HOH A 25 425 29 HOH HOH . E 4 HOH A 26 426 30 HOH HOH . E 4 HOH A 27 427 31 HOH HOH . E 4 HOH A 28 428 32 HOH HOH . E 4 HOH A 29 429 33 HOH HOH . E 4 HOH A 30 430 36 HOH HOH . E 4 HOH A 31 431 38 HOH HOH . E 4 HOH A 32 432 39 HOH HOH . E 4 HOH A 33 433 42 HOH HOH . E 4 HOH A 34 434 43 HOH HOH . E 4 HOH A 35 435 45 HOH HOH . E 4 HOH A 36 436 46 HOH HOH . E 4 HOH A 37 437 47 HOH HOH . E 4 HOH A 38 438 49 HOH HOH . E 4 HOH A 39 439 50 HOH HOH . E 4 HOH A 40 440 51 HOH HOH . E 4 HOH A 41 441 52 HOH HOH . E 4 HOH A 42 442 53 HOH HOH . E 4 HOH A 43 443 55 HOH HOH . E 4 HOH A 44 444 56 HOH HOH . E 4 HOH A 45 445 57 HOH HOH . E 4 HOH A 46 446 58 HOH HOH . E 4 HOH A 47 447 59 HOH HOH . E 4 HOH A 48 448 60 HOH HOH . E 4 HOH A 49 449 61 HOH HOH . E 4 HOH A 50 450 62 HOH HOH . E 4 HOH A 51 451 63 HOH HOH . E 4 HOH A 52 452 64 HOH HOH . E 4 HOH A 53 453 65 HOH HOH . E 4 HOH A 54 454 68 HOH HOH . E 4 HOH A 55 455 69 HOH HOH . E 4 HOH A 56 456 71 HOH HOH . E 4 HOH A 57 457 73 HOH HOH . E 4 HOH A 58 458 75 HOH HOH . E 4 HOH A 59 459 76 HOH HOH . E 4 HOH A 60 460 77 HOH HOH . E 4 HOH A 61 461 78 HOH HOH . E 4 HOH A 62 462 79 HOH HOH . E 4 HOH A 63 463 80 HOH HOH . E 4 HOH A 64 464 81 HOH HOH . E 4 HOH A 65 465 82 HOH HOH . E 4 HOH A 66 466 83 HOH HOH . E 4 HOH A 67 467 84 HOH HOH . E 4 HOH A 68 468 88 HOH HOH . E 4 HOH A 69 469 91 HOH HOH . E 4 HOH A 70 470 95 HOH HOH . E 4 HOH A 71 471 96 HOH HOH . E 4 HOH A 72 472 97 HOH HOH . E 4 HOH A 73 473 98 HOH HOH . E 4 HOH A 74 474 99 HOH HOH . E 4 HOH A 75 475 101 HOH HOH . E 4 HOH A 76 476 102 HOH HOH . E 4 HOH A 77 477 103 HOH HOH . E 4 HOH A 78 478 104 HOH HOH . E 4 HOH A 79 479 105 HOH HOH . E 4 HOH A 80 480 106 HOH HOH . E 4 HOH A 81 481 107 HOH HOH . E 4 HOH A 82 482 108 HOH HOH . E 4 HOH A 83 483 109 HOH HOH . E 4 HOH A 84 484 110 HOH HOH . E 4 HOH A 85 485 112 HOH HOH . E 4 HOH A 86 486 113 HOH HOH . E 4 HOH A 87 487 114 HOH HOH . E 4 HOH A 88 488 115 HOH HOH . E 4 HOH A 89 489 116 HOH HOH . E 4 HOH A 90 490 117 HOH HOH . E 4 HOH A 91 491 118 HOH HOH . E 4 HOH A 92 492 120 HOH HOH . E 4 HOH A 93 493 121 HOH HOH . E 4 HOH A 94 494 122 HOH HOH . E 4 HOH A 95 495 123 HOH HOH . E 4 HOH A 96 496 124 HOH HOH . E 4 HOH A 97 497 125 HOH HOH . E 4 HOH A 98 498 126 HOH HOH . E 4 HOH A 99 499 127 HOH HOH . E 4 HOH A 100 500 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . D 3 31.625 24.099 14.294 0.8 28.45 ? C1 CIT 303 A 1 HETATM 2 O O1 CIT . . . D 3 32.83 24.285 14.569 0.8 31.21 ? O1 CIT 303 A 1 HETATM 3 O O2 CIT . . . D 3 31.245 22.943 14.004 0.8 26.11 ? O2 CIT 303 A 1 HETATM 4 C C2 CIT . . . D 3 30.667 25.267 14.324 0.8 28.14 ? C2 CIT 303 A 1 HETATM 5 C C3 CIT . . . D 3 29.373 24.922 15.055 0.8 32.48 ? C3 CIT 303 A 1 HETATM 6 O O7 CIT . . . D 3 29.704 24.594 16.427 0.8 30.45 ? O7 CIT 303 A 1 HETATM 7 C C4 CIT . . . D 3 28.406 26.099 15.043 0.8 33.52 ? C4 CIT 303 A 1 HETATM 8 C C5 CIT . . . D 3 29.005 27.245 15.821 0.8 35.23 ? C5 CIT 303 A 1 HETATM 9 O O3 CIT . . . D 3 28.678 27.445 17.01 0.8 37.96 ? O3 CIT 303 A 1 HETATM 10 O O4 CIT . . . D 3 29.834 28.012 15.289 0.8 35.34 ? O4 CIT 303 A 1 HETATM 11 C C6 CIT . . . D 3 28.704 23.709 14.43 0.8 34.7 ? C6 CIT 303 A 1 HETATM 12 O O5 CIT . . . D 3 28.549 22.656 15.085 0.8 34.43 ? O5 CIT 303 A 1 HETATM 13 O O6 CIT . . . D 3 28.32 23.754 13.244 0.8 34.27 ? O6 CIT 303 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #