data_3V91 # _model_server_result.job_id bpBJThn98ZcemtpAEAm0Ow _model_server_result.datetime_utc '2024-10-19 16:28:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v91 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3V91 # _exptl.entry_id 3V91 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V91 _cell.length_a 58.21 _cell.length_b 103.51 _cell.length_c 119.87 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V91 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -103.51 0 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 119.87 4 'crystal symmetry operation' 4_546 x,-y-1,-z+1 1 0 0 0 -1 0 0 0 -1 0 -103.51 119.87 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 122 A ASP 101 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc2 A OD1 ASP 124 A ASP 103 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc3 A OD2 ASP 124 A ASP 103 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc4 A NE2 HIS 232 A HIS 211 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc5 D MN MN . A MN 303 1_555 E O1B UPG . A UPG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc6 D MN MN . A MN 303 1_555 E O1A UPG . A UPG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3V91 _atom_sites.fract_transf_matrix[1][1] 0.017179 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009661 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 263 GOL GOL . C 3 CL A 1 302 264 CL CL . D 4 MN A 1 303 265 MN MN . E 5 UPG A 1 304 266 UPG UPG . F 6 HOH A 1 401 267 HOH HOH . F 6 HOH A 2 402 268 HOH HOH . F 6 HOH A 3 403 269 HOH HOH . F 6 HOH A 4 404 270 HOH HOH . F 6 HOH A 5 405 271 HOH HOH . F 6 HOH A 6 406 272 HOH HOH . F 6 HOH A 7 407 273 HOH HOH . F 6 HOH A 8 408 274 HOH HOH . F 6 HOH A 9 409 275 HOH HOH . F 6 HOH A 10 410 276 HOH HOH . F 6 HOH A 11 411 277 HOH HOH . F 6 HOH A 12 412 278 HOH HOH . F 6 HOH A 13 413 279 HOH HOH . F 6 HOH A 14 414 280 HOH HOH . F 6 HOH A 15 415 281 HOH HOH . F 6 HOH A 16 416 282 HOH HOH . F 6 HOH A 17 417 283 HOH HOH . F 6 HOH A 18 418 284 HOH HOH . F 6 HOH A 19 419 285 HOH HOH . F 6 HOH A 20 420 286 HOH HOH . F 6 HOH A 21 421 287 HOH HOH . F 6 HOH A 22 422 288 HOH HOH . F 6 HOH A 23 423 289 HOH HOH . F 6 HOH A 24 424 290 HOH HOH . F 6 HOH A 25 425 291 HOH HOH . F 6 HOH A 26 426 292 HOH HOH . F 6 HOH A 27 427 293 HOH HOH . F 6 HOH A 28 428 294 HOH HOH . F 6 HOH A 29 429 295 HOH HOH . F 6 HOH A 30 430 296 HOH HOH . F 6 HOH A 31 431 297 HOH HOH . F 6 HOH A 32 432 298 HOH HOH . F 6 HOH A 33 433 299 HOH HOH . F 6 HOH A 34 434 300 HOH HOH . F 6 HOH A 35 435 301 HOH HOH . F 6 HOH A 36 436 302 HOH HOH . F 6 HOH A 37 437 303 HOH HOH . F 6 HOH A 38 438 304 HOH HOH . F 6 HOH A 39 439 305 HOH HOH . F 6 HOH A 40 440 306 HOH HOH . F 6 HOH A 41 441 307 HOH HOH . F 6 HOH A 42 442 308 HOH HOH . F 6 HOH A 43 443 309 HOH HOH . F 6 HOH A 44 444 310 HOH HOH . F 6 HOH A 45 445 311 HOH HOH . F 6 HOH A 46 446 312 HOH HOH . F 6 HOH A 47 447 313 HOH HOH . F 6 HOH A 48 448 314 HOH HOH . F 6 HOH A 49 449 315 HOH HOH . F 6 HOH A 50 450 316 HOH HOH . F 6 HOH A 51 451 317 HOH HOH . F 6 HOH A 52 452 318 HOH HOH . F 6 HOH A 53 453 319 HOH HOH . F 6 HOH A 54 454 320 HOH HOH . F 6 HOH A 55 455 321 HOH HOH . F 6 HOH A 56 456 322 HOH HOH . F 6 HOH A 57 457 323 HOH HOH . F 6 HOH A 58 458 324 HOH HOH . F 6 HOH A 59 459 325 HOH HOH . F 6 HOH A 60 460 326 HOH HOH . F 6 HOH A 61 461 327 HOH HOH . F 6 HOH A 62 462 328 HOH HOH . F 6 HOH A 63 463 329 HOH HOH . F 6 HOH A 64 464 330 HOH HOH . F 6 HOH A 65 465 331 HOH HOH . F 6 HOH A 66 466 332 HOH HOH . F 6 HOH A 67 467 333 HOH HOH . F 6 HOH A 68 468 334 HOH HOH . F 6 HOH A 69 469 335 HOH HOH . F 6 HOH A 70 470 336 HOH HOH . F 6 HOH A 71 471 337 HOH HOH . F 6 HOH A 72 472 338 HOH HOH . F 6 HOH A 73 473 339 HOH HOH . F 6 HOH A 74 474 340 HOH HOH . F 6 HOH A 75 475 341 HOH HOH . F 6 HOH A 76 476 342 HOH HOH . F 6 HOH A 77 477 343 HOH HOH . F 6 HOH A 78 478 344 HOH HOH . F 6 HOH A 79 479 345 HOH HOH . F 6 HOH A 80 480 346 HOH HOH . F 6 HOH A 81 481 347 HOH HOH . F 6 HOH A 82 482 348 HOH HOH . F 6 HOH A 83 483 349 HOH HOH . F 6 HOH A 84 484 350 HOH HOH . F 6 HOH A 85 485 351 HOH HOH . F 6 HOH A 86 486 352 HOH HOH . F 6 HOH A 87 487 353 HOH HOH . F 6 HOH A 88 488 354 HOH HOH . F 6 HOH A 89 489 355 HOH HOH . F 6 HOH A 90 490 356 HOH HOH . F 6 HOH A 91 491 357 HOH HOH . F 6 HOH A 92 492 358 HOH HOH . F 6 HOH A 93 493 359 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -7.902 -45.396 73.13 1 39.15 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . B 2 -9.039 -46.23 73.153 1 40.8 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . B 2 -8.319 -44.037 72.591 1 39.14 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . B 2 -8.269 -44.091 71.182 1 38.43 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . B 2 -7.344 -42.977 73.095 1 37.93 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . B 2 -7.738 -41.717 72.597 1 35.7 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #