data_3V9O # _model_server_result.job_id tvIV1V3dWy8ZEx30dYOraw _model_server_result.datetime_utc '2024-11-22 13:25:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v9o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":142}' # _entry.id 3V9O # _exptl.entry_id 3V9O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V9O _cell.length_a 73.984 _cell.length_b 73.984 _cell.length_c 110.976 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V9O _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_645 -x+1,-y-1,z -1 0 0 0 -1 0 0 0 1 73.984 -73.984 0 3 'crystal symmetry operation' 3_545 -y,x-1,z 0 -1 0 1 0 0 0 0 1 0 -73.984 0 4 'crystal symmetry operation' 4_655 y+1,-x,z 0 1 0 -1 0 0 0 0 1 73.984 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3V9O _atom_sites.fract_transf_matrix[1][1] 0.013516 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 140 1 EDO EDO . C 2 EDO A 1 141 2 EDO EDO . D 2 EDO A 1 142 3 EDO EDO . E 2 EDO A 1 143 4 EDO EDO . F 2 EDO A 1 144 5 EDO EDO . G 3 GUN A 1 145 1 GUN GUN . H 4 SO4 A 1 146 1 SO4 SO4 . I 5 HOH A 1 147 1 HOH HOH . I 5 HOH A 2 148 2 HOH HOH . I 5 HOH A 3 149 3 HOH HOH . I 5 HOH A 4 150 4 HOH HOH . I 5 HOH A 5 151 5 HOH HOH . I 5 HOH A 6 152 6 HOH HOH . I 5 HOH A 7 153 7 HOH HOH . I 5 HOH A 8 154 8 HOH HOH . I 5 HOH A 9 155 9 HOH HOH . I 5 HOH A 10 156 10 HOH HOH . I 5 HOH A 11 157 11 HOH HOH . I 5 HOH A 12 158 12 HOH HOH . I 5 HOH A 13 159 13 HOH HOH . I 5 HOH A 14 160 14 HOH HOH . I 5 HOH A 15 161 15 HOH HOH . I 5 HOH A 16 162 16 HOH HOH . I 5 HOH A 17 163 17 HOH HOH . I 5 HOH A 18 164 18 HOH HOH . I 5 HOH A 19 165 19 HOH HOH . I 5 HOH A 20 166 20 HOH HOH . I 5 HOH A 21 167 21 HOH HOH . I 5 HOH A 22 168 22 HOH HOH . I 5 HOH A 23 169 23 HOH HOH . I 5 HOH A 24 170 24 HOH HOH . I 5 HOH A 25 171 25 HOH HOH . I 5 HOH A 26 172 26 HOH HOH . I 5 HOH A 27 173 27 HOH HOH . I 5 HOH A 28 174 28 HOH HOH . I 5 HOH A 29 175 29 HOH HOH . I 5 HOH A 30 176 30 HOH HOH . I 5 HOH A 31 177 31 HOH HOH . I 5 HOH A 32 178 32 HOH HOH . I 5 HOH A 33 179 33 HOH HOH . I 5 HOH A 34 180 34 HOH HOH . I 5 HOH A 35 181 35 HOH HOH . I 5 HOH A 36 182 36 HOH HOH . I 5 HOH A 37 183 37 HOH HOH . I 5 HOH A 38 184 38 HOH HOH . I 5 HOH A 39 185 39 HOH HOH . I 5 HOH A 40 186 40 HOH HOH . I 5 HOH A 41 187 41 HOH HOH . I 5 HOH A 42 188 42 HOH HOH . I 5 HOH A 43 189 43 HOH HOH . I 5 HOH A 44 190 44 HOH HOH . I 5 HOH A 45 191 45 HOH HOH . I 5 HOH A 46 192 46 HOH HOH . I 5 HOH A 47 193 47 HOH HOH . I 5 HOH A 48 194 48 HOH HOH . I 5 HOH A 49 195 49 HOH HOH . I 5 HOH A 50 196 50 HOH HOH . I 5 HOH A 51 197 51 HOH HOH . I 5 HOH A 52 198 52 HOH HOH . I 5 HOH A 53 199 53 HOH HOH . I 5 HOH A 54 200 54 HOH HOH . I 5 HOH A 55 201 55 HOH HOH . I 5 HOH A 56 202 56 HOH HOH . I 5 HOH A 57 203 57 HOH HOH . I 5 HOH A 58 204 58 HOH HOH . I 5 HOH A 59 205 59 HOH HOH . I 5 HOH A 60 206 60 HOH HOH . I 5 HOH A 61 207 61 HOH HOH . I 5 HOH A 62 208 62 HOH HOH . I 5 HOH A 63 209 63 HOH HOH . I 5 HOH A 64 210 64 HOH HOH . I 5 HOH A 65 211 65 HOH HOH . I 5 HOH A 66 212 66 HOH HOH . I 5 HOH A 67 213 67 HOH HOH . I 5 HOH A 68 214 68 HOH HOH . I 5 HOH A 69 215 69 HOH HOH . I 5 HOH A 70 216 70 HOH HOH . I 5 HOH A 71 217 71 HOH HOH . I 5 HOH A 72 218 72 HOH HOH . I 5 HOH A 73 219 73 HOH HOH . I 5 HOH A 74 220 74 HOH HOH . I 5 HOH A 75 221 75 HOH HOH . I 5 HOH A 76 222 76 HOH HOH . I 5 HOH A 77 223 77 HOH HOH . I 5 HOH A 78 224 78 HOH HOH . I 5 HOH A 79 225 79 HOH HOH . I 5 HOH A 80 226 80 HOH HOH . I 5 HOH A 81 227 81 HOH HOH . I 5 HOH A 82 228 82 HOH HOH . I 5 HOH A 83 229 83 HOH HOH . I 5 HOH A 84 230 84 HOH HOH . I 5 HOH A 85 231 85 HOH HOH . I 5 HOH A 86 232 86 HOH HOH . I 5 HOH A 87 233 87 HOH HOH . I 5 HOH A 88 234 88 HOH HOH . I 5 HOH A 89 235 89 HOH HOH . I 5 HOH A 90 236 90 HOH HOH . I 5 HOH A 91 237 91 HOH HOH . I 5 HOH A 92 238 92 HOH HOH . I 5 HOH A 93 239 93 HOH HOH . I 5 HOH A 94 240 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 20.639 -14.419 22.975 1 47.99 ? C1 EDO 142 A 1 HETATM 2 O O1 EDO . . . D 2 19.666 -14.852 22 1 47.95 ? O1 EDO 142 A 1 HETATM 3 C C2 EDO . . . D 2 22.016 -14.793 22.42 1 42.04 ? C2 EDO 142 A 1 HETATM 4 O O2 EDO . . . D 2 22.963 -14.968 23.47 1 42.78 ? O2 EDO 142 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #