data_3V9P
#
_model_server_result.job_id            M_kJH9OeQHvtwSETODNV0A 
_model_server_result.datetime_utc      '2024-11-07 06:43:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3v9p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":252}' 
#
_entry.id    3V9P 
#
_exptl.entry_id    3V9P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3V9P 
_cell.length_a            68.13 
_cell.length_b            77.97 
_cell.length_c            84.13 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3V9P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,J 1 1 
B,G,H,I,K 2 1 
A,C,D,E,F,J 3 1 
B,G,H,I,K 3 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_645 -x+1,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 68.13 -38.985 42.065 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 135 n n 
C1 C2 GOL sing 136 n n 
C1 H11 GOL sing 137 n n 
C1 H12 GOL sing 138 n n 
O1 HO1 GOL sing 139 n n 
C2 O2 GOL sing 140 n n 
C2 C3 GOL sing 141 n n 
C2 H2 GOL sing 142 n n 
O2 HO2 GOL sing 143 n n 
C3 O3 GOL sing 144 n n 
C3 H31 GOL sing 145 n n 
C3 H32 GOL sing 146 n n 
O3 HO3 GOL sing 147 n n 
#
_atom_sites.entry_id                     3V9P 
_atom_sites.fract_transf_matrix[1][1]    0.014678 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012825 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011886 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MRD A 1 250 250 MRD MPD . 
D 3 GOL A 1 252 252 GOL GOL . 
E 3 GOL A 1 253 253 GOL GOL . 
F 4 ACT A 1 255 255 ACT ACT . 
G 2 MRD B 1 250 250 MRD MPD . 
H 4 ACT B 1 255 255 ACT ACT . 
I 5 PEG B 1 207 1 PEG PEG . 
J 6 HOH A 1 207 207 HOH HOH . 
J 6 HOH A 2 208 208 HOH HOH . 
J 6 HOH A 3 209 209 HOH HOH . 
J 6 HOH A 4 210 2 HOH HOH . 
J 6 HOH A 5 211 211 HOH HOH . 
J 6 HOH A 6 212 212 HOH HOH . 
J 6 HOH A 7 213 3 HOH HOH . 
J 6 HOH A 8 214 214 HOH HOH . 
J 6 HOH A 9 215 6 HOH HOH . 
J 6 HOH A 10 216 7 HOH HOH . 
J 6 HOH A 11 217 217 HOH HOH . 
J 6 HOH A 12 218 218 HOH HOH . 
J 6 HOH A 13 219 219 HOH HOH . 
J 6 HOH A 14 220 9 HOH HOH . 
J 6 HOH A 15 221 221 HOH HOH . 
J 6 HOH A 16 222 222 HOH HOH . 
J 6 HOH A 17 223 11 HOH HOH . 
J 6 HOH A 18 224 15 HOH HOH . 
J 6 HOH A 19 225 16 HOH HOH . 
J 6 HOH A 20 226 18 HOH HOH . 
J 6 HOH A 21 227 19 HOH HOH . 
J 6 HOH A 22 228 22 HOH HOH . 
J 6 HOH A 23 229 229 HOH HOH . 
J 6 HOH A 24 230 230 HOH HOH . 
J 6 HOH A 25 231 231 HOH HOH . 
J 6 HOH A 26 232 24 HOH HOH . 
J 6 HOH A 27 233 25 HOH HOH . 
J 6 HOH A 28 234 28 HOH HOH . 
J 6 HOH A 29 235 32 HOH HOH . 
J 6 HOH A 30 236 236 HOH HOH . 
J 6 HOH A 31 237 237 HOH HOH . 
J 6 HOH A 32 238 33 HOH HOH . 
J 6 HOH A 33 239 37 HOH HOH . 
J 6 HOH A 34 240 240 HOH HOH . 
J 6 HOH A 35 241 241 HOH HOH . 
J 6 HOH A 36 242 40 HOH HOH . 
J 6 HOH A 37 243 243 HOH HOH . 
J 6 HOH A 38 244 244 HOH HOH . 
J 6 HOH A 39 245 245 HOH HOH . 
J 6 HOH A 40 246 246 HOH HOH . 
J 6 HOH A 41 247 42 HOH HOH . 
J 6 HOH A 42 248 248 HOH HOH . 
J 6 HOH A 43 249 249 HOH HOH . 
J 6 HOH A 44 251 251 HOH HOH . 
J 6 HOH A 45 254 44 HOH HOH . 
J 6 HOH A 46 256 48 HOH HOH . 
J 6 HOH A 47 257 49 HOH HOH . 
J 6 HOH A 48 258 51 HOH HOH . 
J 6 HOH A 49 259 53 HOH HOH . 
J 6 HOH A 50 260 57 HOH HOH . 
J 6 HOH A 51 261 59 HOH HOH . 
J 6 HOH A 52 262 61 HOH HOH . 
J 6 HOH A 53 263 63 HOH HOH . 
J 6 HOH A 54 264 64 HOH HOH . 
J 6 HOH A 55 265 65 HOH HOH . 
J 6 HOH A 56 266 66 HOH HOH . 
J 6 HOH A 57 267 67 HOH HOH . 
J 6 HOH A 58 268 69 HOH HOH . 
J 6 HOH A 59 269 71 HOH HOH . 
J 6 HOH A 60 270 76 HOH HOH . 
J 6 HOH A 61 271 271 HOH HOH . 
J 6 HOH A 62 272 77 HOH HOH . 
J 6 HOH A 63 273 79 HOH HOH . 
J 6 HOH A 64 274 81 HOH HOH . 
J 6 HOH A 65 275 82 HOH HOH . 
J 6 HOH A 66 276 83 HOH HOH . 
J 6 HOH A 67 277 85 HOH HOH . 
J 6 HOH A 68 278 91 HOH HOH . 
J 6 HOH A 69 279 279 HOH HOH . 
J 6 HOH A 70 280 92 HOH HOH . 
J 6 HOH A 71 281 94 HOH HOH . 
J 6 HOH A 72 282 95 HOH HOH . 
J 6 HOH A 73 283 96 HOH HOH . 
J 6 HOH A 74 284 97 HOH HOH . 
J 6 HOH A 75 285 98 HOH HOH . 
J 6 HOH A 76 286 99 HOH HOH . 
J 6 HOH A 77 287 100 HOH HOH . 
J 6 HOH A 78 288 101 HOH HOH . 
J 6 HOH A 79 289 102 HOH HOH . 
J 6 HOH A 80 290 103 HOH HOH . 
J 6 HOH A 81 291 104 HOH HOH . 
J 6 HOH A 82 292 105 HOH HOH . 
J 6 HOH A 83 293 106 HOH HOH . 
J 6 HOH A 84 294 107 HOH HOH . 
J 6 HOH A 85 295 108 HOH HOH . 
J 6 HOH A 86 296 109 HOH HOH . 
J 6 HOH A 87 297 110 HOH HOH . 
J 6 HOH A 88 298 111 HOH HOH . 
J 6 HOH A 89 299 113 HOH HOH . 
J 6 HOH A 90 300 128 HOH HOH . 
J 6 HOH A 91 301 131 HOH HOH . 
J 6 HOH A 92 302 134 HOH HOH . 
J 6 HOH A 93 303 136 HOH HOH . 
J 6 HOH A 94 304 140 HOH HOH . 
J 6 HOH A 95 305 143 HOH HOH . 
J 6 HOH A 96 306 144 HOH HOH . 
J 6 HOH A 97 307 146 HOH HOH . 
J 6 HOH A 98 308 148 HOH HOH . 
J 6 HOH A 99 309 149 HOH HOH . 
J 6 HOH A 100 310 153 HOH HOH . 
J 6 HOH A 101 311 154 HOH HOH . 
J 6 HOH A 102 312 155 HOH HOH . 
J 6 HOH A 103 313 156 HOH HOH . 
J 6 HOH A 104 314 157 HOH HOH . 
J 6 HOH A 105 315 163 HOH HOH . 
J 6 HOH A 106 316 168 HOH HOH . 
J 6 HOH A 107 317 169 HOH HOH . 
J 6 HOH A 108 318 170 HOH HOH . 
J 6 HOH A 109 319 172 HOH HOH . 
J 6 HOH A 110 320 173 HOH HOH . 
J 6 HOH A 111 321 176 HOH HOH . 
J 6 HOH A 112 322 177 HOH HOH . 
J 6 HOH A 113 323 180 HOH HOH . 
J 6 HOH A 114 324 181 HOH HOH . 
J 6 HOH A 115 325 182 HOH HOH . 
J 6 HOH A 116 326 183 HOH HOH . 
J 6 HOH A 117 327 187 HOH HOH . 
J 6 HOH A 118 328 188 HOH HOH . 
J 6 HOH A 119 329 191 HOH HOH . 
J 6 HOH A 120 330 192 HOH HOH . 
J 6 HOH A 121 331 194 HOH HOH . 
J 6 HOH A 122 332 200 HOH HOH . 
J 6 HOH A 123 333 203 HOH HOH . 
J 6 HOH A 124 334 250 HOH HOH . 
J 6 HOH A 125 335 252 HOH HOH . 
K 6 HOH B 1 208 1 HOH HOH . 
K 6 HOH B 2 209 4 HOH HOH . 
K 6 HOH B 3 210 210 HOH HOH . 
K 6 HOH B 4 211 5 HOH HOH . 
K 6 HOH B 5 212 8 HOH HOH . 
K 6 HOH B 6 213 213 HOH HOH . 
K 6 HOH B 7 214 10 HOH HOH . 
K 6 HOH B 8 215 215 HOH HOH . 
K 6 HOH B 9 216 216 HOH HOH . 
K 6 HOH B 10 217 12 HOH HOH . 
K 6 HOH B 11 218 13 HOH HOH . 
K 6 HOH B 12 219 14 HOH HOH . 
K 6 HOH B 13 220 220 HOH HOH . 
K 6 HOH B 14 221 17 HOH HOH . 
K 6 HOH B 15 222 20 HOH HOH . 
K 6 HOH B 16 223 223 HOH HOH . 
K 6 HOH B 17 224 224 HOH HOH . 
K 6 HOH B 18 225 225 HOH HOH . 
K 6 HOH B 19 226 226 HOH HOH . 
K 6 HOH B 20 227 21 HOH HOH . 
K 6 HOH B 21 228 228 HOH HOH . 
K 6 HOH B 22 229 23 HOH HOH . 
K 6 HOH B 23 230 26 HOH HOH . 
K 6 HOH B 24 231 27 HOH HOH . 
K 6 HOH B 25 232 29 HOH HOH . 
K 6 HOH B 26 233 233 HOH HOH . 
K 6 HOH B 27 234 234 HOH HOH . 
K 6 HOH B 28 235 30 HOH HOH . 
K 6 HOH B 29 236 31 HOH HOH . 
K 6 HOH B 30 237 35 HOH HOH . 
K 6 HOH B 31 238 36 HOH HOH . 
K 6 HOH B 32 239 239 HOH HOH . 
K 6 HOH B 33 240 38 HOH HOH . 
K 6 HOH B 34 241 39 HOH HOH . 
K 6 HOH B 35 242 242 HOH HOH . 
K 6 HOH B 36 243 41 HOH HOH . 
K 6 HOH B 37 244 43 HOH HOH . 
K 6 HOH B 38 245 45 HOH HOH . 
K 6 HOH B 39 246 46 HOH HOH . 
K 6 HOH B 40 247 47 HOH HOH . 
K 6 HOH B 41 248 50 HOH HOH . 
K 6 HOH B 42 249 52 HOH HOH . 
K 6 HOH B 43 251 55 HOH HOH . 
K 6 HOH B 44 252 56 HOH HOH . 
K 6 HOH B 45 253 58 HOH HOH . 
K 6 HOH B 46 254 62 HOH HOH . 
K 6 HOH B 47 256 256 HOH HOH . 
K 6 HOH B 48 257 68 HOH HOH . 
K 6 HOH B 49 258 70 HOH HOH . 
K 6 HOH B 50 259 259 HOH HOH . 
K 6 HOH B 51 260 260 HOH HOH . 
K 6 HOH B 52 261 261 HOH HOH . 
K 6 HOH B 53 262 262 HOH HOH . 
K 6 HOH B 54 263 263 HOH HOH . 
K 6 HOH B 55 264 264 HOH HOH . 
K 6 HOH B 56 265 265 HOH HOH . 
K 6 HOH B 57 266 266 HOH HOH . 
K 6 HOH B 58 267 267 HOH HOH . 
K 6 HOH B 59 268 268 HOH HOH . 
K 6 HOH B 60 269 269 HOH HOH . 
K 6 HOH B 61 270 270 HOH HOH . 
K 6 HOH B 62 271 72 HOH HOH . 
K 6 HOH B 63 272 272 HOH HOH . 
K 6 HOH B 64 273 273 HOH HOH . 
K 6 HOH B 65 274 274 HOH HOH . 
K 6 HOH B 66 275 275 HOH HOH . 
K 6 HOH B 67 276 276 HOH HOH . 
K 6 HOH B 68 277 277 HOH HOH . 
K 6 HOH B 69 278 278 HOH HOH . 
K 6 HOH B 70 279 73 HOH HOH . 
K 6 HOH B 71 280 280 HOH HOH . 
K 6 HOH B 72 281 281 HOH HOH . 
K 6 HOH B 73 282 74 HOH HOH . 
K 6 HOH B 74 283 75 HOH HOH . 
K 6 HOH B 75 284 78 HOH HOH . 
K 6 HOH B 76 285 80 HOH HOH . 
K 6 HOH B 77 286 84 HOH HOH . 
K 6 HOH B 78 287 86 HOH HOH . 
K 6 HOH B 79 288 89 HOH HOH . 
K 6 HOH B 80 289 93 HOH HOH . 
K 6 HOH B 81 290 112 HOH HOH . 
K 6 HOH B 82 291 114 HOH HOH . 
K 6 HOH B 83 292 115 HOH HOH . 
K 6 HOH B 84 293 116 HOH HOH . 
K 6 HOH B 85 294 117 HOH HOH . 
K 6 HOH B 86 295 118 HOH HOH . 
K 6 HOH B 87 296 119 HOH HOH . 
K 6 HOH B 88 297 120 HOH HOH . 
K 6 HOH B 89 298 121 HOH HOH . 
K 6 HOH B 90 299 122 HOH HOH . 
K 6 HOH B 91 300 124 HOH HOH . 
K 6 HOH B 92 301 125 HOH HOH . 
K 6 HOH B 93 302 126 HOH HOH . 
K 6 HOH B 94 303 127 HOH HOH . 
K 6 HOH B 95 304 129 HOH HOH . 
K 6 HOH B 96 305 130 HOH HOH . 
K 6 HOH B 97 306 132 HOH HOH . 
K 6 HOH B 98 307 133 HOH HOH . 
K 6 HOH B 99 308 135 HOH HOH . 
K 6 HOH B 100 309 137 HOH HOH . 
K 6 HOH B 101 310 138 HOH HOH . 
K 6 HOH B 102 311 139 HOH HOH . 
K 6 HOH B 103 312 141 HOH HOH . 
K 6 HOH B 104 313 142 HOH HOH . 
K 6 HOH B 105 314 145 HOH HOH . 
K 6 HOH B 106 315 147 HOH HOH . 
K 6 HOH B 107 316 150 HOH HOH . 
K 6 HOH B 108 317 151 HOH HOH . 
K 6 HOH B 109 318 152 HOH HOH . 
K 6 HOH B 110 319 158 HOH HOH . 
K 6 HOH B 111 320 159 HOH HOH . 
K 6 HOH B 112 321 160 HOH HOH . 
K 6 HOH B 113 322 161 HOH HOH . 
K 6 HOH B 114 323 162 HOH HOH . 
K 6 HOH B 115 324 164 HOH HOH . 
K 6 HOH B 116 325 165 HOH HOH . 
K 6 HOH B 117 326 167 HOH HOH . 
K 6 HOH B 118 327 171 HOH HOH . 
K 6 HOH B 119 328 174 HOH HOH . 
K 6 HOH B 120 329 175 HOH HOH . 
K 6 HOH B 121 330 179 HOH HOH . 
K 6 HOH B 122 331 185 HOH HOH . 
K 6 HOH B 123 332 186 HOH HOH . 
K 6 HOH B 124 333 189 HOH HOH . 
K 6 HOH B 125 334 190 HOH HOH . 
K 6 HOH B 126 335 193 HOH HOH . 
K 6 HOH B 127 336 195 HOH HOH . 
K 6 HOH B 128 337 196 HOH HOH . 
K 6 HOH B 129 338 197 HOH HOH . 
K 6 HOH B 130 339 199 HOH HOH . 
K 6 HOH B 131 340 202 HOH HOH . 
K 6 HOH B 132 341 204 HOH HOH . 
K 6 HOH B 133 342 205 HOH HOH . 
K 6 HOH B 134 343 206 HOH HOH . 
K 6 HOH B 135 344 255 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 32.723 76.694 1.964 1 24.93 ? C1 GOL 252 A 1 
HETATM 2 O O1 GOL . . . D 3 32.147 78.008 2.032 1 25.14 ? O1 GOL 252 A 1 
HETATM 3 C C2 GOL . . . D 3 33.637 76.434 3.158 1 24.59 ? C2 GOL 252 A 1 
HETATM 4 O O2 GOL . . . D 3 32.892 76.144 4.34 1 24.31 ? O2 GOL 252 A 1 
HETATM 5 C C3 GOL . . . D 3 34.581 75.268 2.868 1 24.19 ? C3 GOL 252 A 1 
HETATM 6 O O3 GOL . . . D 3 33.852 74.159 2.32 1 24.78 ? O3 GOL 252 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#