data_3V9V # _model_server_result.job_id uGrJMqDLb5KM9lJb1tZRmQ _model_server_result.datetime_utc '2025-07-30 21:00:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v9v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3V9V # _exptl.entry_id 3V9V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 571.574 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl 3-{4-[({[(9aS)-8-acetyl-1,7-dihydroxy-3-methoxy-9a-methyl-9-oxo-9,9a-dihydrodibenzo[b,d]furan-4-yl]carbonyl}amino)methyl]naphthalen-2-yl}propanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.89 _cell.angle_gamma 90 _cell.entry_id 3V9V _cell.length_a 38.91 _cell.length_b 54.516 _cell.length_c 66.543 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V9V _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H29 N O9' _chem_comp.formula_weight 571.574 _chem_comp.id 21L _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl 3-{4-[({[(9aS)-8-acetyl-1,7-dihydroxy-3-methoxy-9a-methyl-9-oxo-9,9a-dihydrodibenzo[b,d]furan-4-yl]carbonyl}amino)methyl]naphthalen-2-yl}propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 21L doub 1 n y C1 C3 21L sing 2 n y C2 C4 21L sing 3 n y C3 C8 21L doub 4 n y C4 C9 21L doub 5 n y C5 C8 21L sing 6 n y C5 C12 21L doub 7 n y C6 C12 21L sing 8 n y C6 C13 21L doub 9 n y C7 C15 21L doub 10 n y C7 C16 21L sing 11 n y C8 C9 21L sing 12 n y C9 C13 21L sing 13 n y C10 C14 21L doub 14 n y C10 C15 21L sing 15 n y C10 C22 21L sing 16 n n C11 C14 21L sing 17 n y C11 C16 21L doub 18 n y C11 C25 21L sing 19 n n C12 C30 21L sing 20 n n C13 C31 21L sing 21 n n C14 O38 21L sing 22 n n C15 O41 21L sing 23 n n C16 O39 21L sing 24 n n C17 C19 21L sing 25 n n C17 C20 21L doub 26 n n C18 C19 21L doub 27 n n C18 C21 21L sing 28 n n C18 C23 21L sing 29 n n C19 O40 21L sing 30 n n C20 C25 21L sing 31 n n C20 O38 21L sing 32 n n C21 C25 21L sing 33 n n C21 O34 21L doub 34 n n C22 N33 21L sing 35 n n C22 O35 21L doub 36 n n C23 C26 21L sing 37 n n C23 O36 21L doub 38 n n C24 C32 21L sing 39 n n C24 O37 21L doub 40 n n C24 O42 21L sing 41 n n C25 C27 21L sing 42 n n C28 O41 21L sing 43 n n C29 O42 21L sing 44 n n C30 C32 21L sing 45 n n C31 N33 21L sing 46 n n C1 H1 21L sing 47 n n C2 H2 21L sing 48 n n C3 H3 21L sing 49 n n C4 H4 21L sing 50 n n C5 H5 21L sing 51 n n C6 H6 21L sing 52 n n C7 H7 21L sing 53 n n C17 H17 21L sing 54 n n C26 H26 21L sing 55 n n C26 H26A 21L sing 56 n n C26 H26B 21L sing 57 n n C27 H27 21L sing 58 n n C27 H27A 21L sing 59 n n C27 H27B 21L sing 60 n n C28 H28 21L sing 61 n n C28 H28A 21L sing 62 n n C28 H28B 21L sing 63 n n C29 H29 21L sing 64 n n C29 H29A 21L sing 65 n n C29 H29B 21L sing 66 n n C30 H30 21L sing 67 n n C30 H30A 21L sing 68 n n C31 H31 21L sing 69 n n C31 H31A 21L sing 70 n n C32 H32 21L sing 71 n n C32 H32A 21L sing 72 n n N33 HN33 21L sing 73 n n O39 HO39 21L sing 74 n n O40 HO40 21L sing 75 n n # _atom_sites.entry_id 3V9V _atom_sites.fract_transf_matrix[1][1] 0.0257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000849 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 21L A 1 501 1 21L UNL . D 4 HOH A 1 601 1 HOH HOH . D 4 HOH A 2 602 2 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 4 HOH HOH . D 4 HOH A 5 605 5 HOH HOH . D 4 HOH A 6 606 6 HOH HOH . D 4 HOH A 7 607 7 HOH HOH . D 4 HOH A 8 608 8 HOH HOH . D 4 HOH A 9 609 9 HOH HOH . D 4 HOH A 10 610 10 HOH HOH . D 4 HOH A 11 611 11 HOH HOH . D 4 HOH A 12 612 12 HOH HOH . D 4 HOH A 13 613 13 HOH HOH . D 4 HOH A 14 614 14 HOH HOH . D 4 HOH A 15 615 15 HOH HOH . D 4 HOH A 16 616 16 HOH HOH . D 4 HOH A 17 617 17 HOH HOH . D 4 HOH A 18 618 18 HOH HOH . D 4 HOH A 19 619 19 HOH HOH . D 4 HOH A 20 620 20 HOH HOH . D 4 HOH A 21 621 21 HOH HOH . D 4 HOH A 22 622 22 HOH HOH . D 4 HOH A 23 623 23 HOH HOH . D 4 HOH A 24 624 24 HOH HOH . D 4 HOH A 25 625 25 HOH HOH . D 4 HOH A 26 626 26 HOH HOH . D 4 HOH A 27 627 27 HOH HOH . D 4 HOH A 28 628 28 HOH HOH . D 4 HOH A 29 629 29 HOH HOH . D 4 HOH A 30 630 30 HOH HOH . D 4 HOH A 31 631 31 HOH HOH . D 4 HOH A 32 632 32 HOH HOH . D 4 HOH A 33 633 33 HOH HOH . D 4 HOH A 34 634 34 HOH HOH . D 4 HOH A 35 635 35 HOH HOH . D 4 HOH A 36 636 36 HOH HOH . D 4 HOH A 37 637 37 HOH HOH . D 4 HOH A 38 638 38 HOH HOH . D 4 HOH A 39 639 39 HOH HOH . D 4 HOH A 40 640 40 HOH HOH . D 4 HOH A 41 641 41 HOH HOH . D 4 HOH A 42 642 42 HOH HOH . D 4 HOH A 43 643 43 HOH HOH . D 4 HOH A 44 644 44 HOH HOH . D 4 HOH A 45 645 45 HOH HOH . D 4 HOH A 46 646 46 HOH HOH . D 4 HOH A 47 647 47 HOH HOH . D 4 HOH A 48 648 48 HOH HOH . D 4 HOH A 49 649 49 HOH HOH . D 4 HOH A 50 650 50 HOH HOH . D 4 HOH A 51 651 51 HOH HOH . D 4 HOH A 52 652 52 HOH HOH . D 4 HOH A 53 653 53 HOH HOH . D 4 HOH A 54 654 54 HOH HOH . D 4 HOH A 55 655 55 HOH HOH . D 4 HOH A 56 656 56 HOH HOH . D 4 HOH A 57 657 57 HOH HOH . D 4 HOH A 58 658 58 HOH HOH . D 4 HOH A 59 659 59 HOH HOH . D 4 HOH A 60 660 60 HOH HOH . D 4 HOH A 61 661 61 HOH HOH . D 4 HOH A 62 662 62 HOH HOH . D 4 HOH A 63 663 65 HOH HOH . D 4 HOH A 64 664 66 HOH HOH . D 4 HOH A 65 665 67 HOH HOH . D 4 HOH A 66 666 68 HOH HOH . D 4 HOH A 67 667 69 HOH HOH . D 4 HOH A 68 668 70 HOH HOH . D 4 HOH A 69 669 71 HOH HOH . D 4 HOH A 70 670 72 HOH HOH . D 4 HOH A 71 671 73 HOH HOH . D 4 HOH A 72 672 74 HOH HOH . D 4 HOH A 73 673 76 HOH HOH . D 4 HOH A 74 674 77 HOH HOH . D 4 HOH A 75 675 78 HOH HOH . D 4 HOH A 76 676 79 HOH HOH . D 4 HOH A 77 677 80 HOH HOH . D 4 HOH A 78 678 82 HOH HOH . D 4 HOH A 79 679 83 HOH HOH . D 4 HOH A 80 680 85 HOH HOH . D 4 HOH A 81 681 86 HOH HOH . D 4 HOH A 82 682 88 HOH HOH . D 4 HOH A 83 683 89 HOH HOH . D 4 HOH A 84 684 90 HOH HOH . D 4 HOH A 85 685 91 HOH HOH . D 4 HOH A 86 686 92 HOH HOH . D 4 HOH A 87 687 93 HOH HOH . D 4 HOH A 88 688 94 HOH HOH . D 4 HOH A 89 689 95 HOH HOH . D 4 HOH A 90 690 96 HOH HOH . D 4 HOH A 91 691 98 HOH HOH . D 4 HOH A 92 692 99 HOH HOH . D 4 HOH A 93 693 101 HOH HOH . D 4 HOH A 94 694 102 HOH HOH . D 4 HOH A 95 695 103 HOH HOH . D 4 HOH A 96 696 105 HOH HOH . D 4 HOH A 97 697 106 HOH HOH . D 4 HOH A 98 698 107 HOH HOH . D 4 HOH A 99 699 109 HOH HOH . D 4 HOH A 100 700 111 HOH HOH . D 4 HOH A 101 701 112 HOH HOH . D 4 HOH A 102 702 113 HOH HOH . D 4 HOH A 103 703 116 HOH HOH . D 4 HOH A 104 704 120 HOH HOH . D 4 HOH A 105 705 121 HOH HOH . D 4 HOH A 106 706 122 HOH HOH . D 4 HOH A 107 707 123 HOH HOH . D 4 HOH A 108 708 124 HOH HOH . D 4 HOH A 109 709 127 HOH HOH . D 4 HOH A 110 710 128 HOH HOH . D 4 HOH A 111 711 132 HOH HOH . D 4 HOH A 112 712 134 HOH HOH . D 4 HOH A 113 713 135 HOH HOH . D 4 HOH A 114 714 138 HOH HOH . D 4 HOH A 115 715 139 HOH HOH . D 4 HOH A 116 716 140 HOH HOH . D 4 HOH A 117 717 142 HOH HOH . D 4 HOH A 118 718 143 HOH HOH . D 4 HOH A 119 719 145 HOH HOH . D 4 HOH A 120 720 146 HOH HOH . D 4 HOH A 121 721 148 HOH HOH . D 4 HOH A 122 722 149 HOH HOH . D 4 HOH A 123 723 150 HOH HOH . D 4 HOH A 124 724 152 HOH HOH . D 4 HOH A 125 725 154 HOH HOH . D 4 HOH A 126 726 155 HOH HOH . D 4 HOH A 127 727 158 HOH HOH . D 4 HOH A 128 728 159 HOH HOH . D 4 HOH A 129 729 160 HOH HOH . D 4 HOH A 130 730 162 HOH HOH . D 4 HOH A 131 731 164 HOH HOH . D 4 HOH A 132 732 165 HOH HOH . D 4 HOH A 133 733 166 HOH HOH . D 4 HOH A 134 734 168 HOH HOH . D 4 HOH A 135 735 172 HOH HOH . D 4 HOH A 136 736 173 HOH HOH . D 4 HOH A 137 737 174 HOH HOH . D 4 HOH A 138 738 175 HOH HOH . D 4 HOH A 139 739 178 HOH HOH . D 4 HOH A 140 740 179 HOH HOH . D 4 HOH A 141 741 180 HOH HOH . D 4 HOH A 142 742 181 HOH HOH . D 4 HOH A 143 743 182 HOH HOH . D 4 HOH A 144 744 184 HOH HOH . D 4 HOH A 145 745 186 HOH HOH . D 4 HOH A 146 746 187 HOH HOH . D 4 HOH A 147 747 190 HOH HOH . D 4 HOH A 148 748 191 HOH HOH . D 4 HOH A 149 749 193 HOH HOH . D 4 HOH A 150 750 195 HOH HOH . D 4 HOH A 151 751 196 HOH HOH . D 4 HOH A 152 752 197 HOH HOH . D 4 HOH A 153 753 201 HOH HOH . D 4 HOH A 154 754 204 HOH HOH . D 4 HOH A 155 755 205 HOH HOH . D 4 HOH A 156 756 213 HOH HOH . D 4 HOH A 157 757 214 HOH HOH . D 4 HOH A 158 758 221 HOH HOH . D 4 HOH A 159 759 233 HOH HOH . D 4 HOH A 160 760 269 HOH HOH . D 4 HOH A 161 761 273 HOH HOH . E 4 HOH C 1 101 63 HOH HOH . E 4 HOH C 2 102 64 HOH HOH . E 4 HOH C 3 103 75 HOH HOH . E 4 HOH C 4 104 108 HOH HOH . E 4 HOH C 5 105 199 HOH HOH . E 4 HOH C 6 106 229 HOH HOH . E 4 HOH C 7 107 232 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 21L . . . C 3 6.243 45.611 57.955 1 21.13 ? C1 21L 501 A 1 HETATM 2 C C2 21L . . . C 3 7.556 45.207 57.993 1 20.88 ? C2 21L 501 A 1 HETATM 3 C C3 21L . . . C 3 5.943 46.947 57.828 1 20.67 ? C3 21L 501 A 1 HETATM 4 C C4 21L . . . C 3 8.566 46.139 57.903 1 20.88 ? C4 21L 501 A 1 HETATM 5 C C5 21L . . . C 3 6.622 49.211 57.61 1 20.83 ? C5 21L 501 A 1 HETATM 6 C C6 21L . . . C 3 8.929 49.771 57.553 1 20.62 ? C6 21L 501 A 1 HETATM 7 C C7 21L . . . C 3 11.905 46.32 62.937 1 24.06 ? C7 21L 501 A 1 HETATM 8 C C8 21L . . . C 3 6.953 47.879 57.737 1 20.78 ? C8 21L 501 A 1 HETATM 9 C C9 21L . . . C 3 8.275 47.483 57.773 1 20.42 ? C9 21L 501 A 1 HETATM 10 C C10 21L . . . C 3 12.572 47.327 60.867 1 22.94 ? C10 21L 501 A 1 HETATM 11 C C11 21L . . . C 3 13.865 47.68 62.842 1 25.54 ? C11 21L 501 A 1 HETATM 12 C C12 21L . . . C 3 7.612 50.163 57.514 1 20.71 ? C12 21L 501 A 1 HETATM 13 C C13 21L . . . C 3 9.268 48.44 57.678 1 20.21 ? C13 21L 501 A 1 HETATM 14 C C14 21L . . . C 3 13.651 47.886 61.507 1 24.38 ? C14 21L 501 A 1 HETATM 15 C C15 21L . . . C 3 11.694 46.538 61.584 1 23.51 ? C15 21L 501 A 1 HETATM 16 C C16 21L . . . C 3 12.994 46.894 63.561 1 24.83 ? C16 21L 501 A 1 HETATM 17 C C17 21L . . . C 3 15.799 50.47 62.069 1 27.65 ? C17 21L 501 A 1 HETATM 18 C C18 21L . . . C 3 16.042 50.398 64.474 1 28.79 ? C18 21L 501 A 1 HETATM 19 C C19 21L . . . C 3 16.352 50.956 63.294 1 28.37 ? C19 21L 501 A 1 HETATM 20 C C20 21L . . . C 3 15.223 49.27 62.045 1 26.77 ? C20 21L 501 A 1 HETATM 21 C C21 21L . . . C 3 15.111 49.246 64.471 1 27.61 ? C21 21L 501 A 1 HETATM 22 C C22 21L . . . C 3 12.378 47.57 59.434 1 21.54 ? C22 21L 501 A 1 HETATM 23 C C23 21L . . . C 3 16.639 50.956 65.7 1 29.98 ? C23 21L 501 A 1 HETATM 24 C C24 21L . . . C 3 6.12 51.759 55.21 1 22.85 ? C24 21L 501 A 1 HETATM 25 C C25 21L . . . C 3 15.099 48.396 63.239 1 26.51 ? C25 21L 501 A 1 HETATM 26 C C26 21L . . . C 3 18.119 51.171 65.699 1 30.54 ? C26 21L 501 A 1 HETATM 27 C C27 21L . . . C 3 16.248 47.421 63.31 1 26.27 ? C27 21L 501 A 1 HETATM 28 C C28 21L . . . C 3 9.597 45.655 61.823 1 23.99 ? C28 21L 501 A 1 HETATM 29 C C29 21L . . . C 3 4.997 51.954 53.25 1 22.85 ? C29 21L 501 A 1 HETATM 30 C C30 21L . . . C 3 7.276 51.611 57.386 1 21.51 ? C30 21L 501 A 1 HETATM 31 C C31 21L . . . C 3 10.717 48.092 57.722 1 20.59 ? C31 21L 501 A 1 HETATM 32 C C32 21L . . . C 3 7.378 52.081 55.951 1 22.36 ? C32 21L 501 A 1 HETATM 33 N N33 21L . . . C 3 11.078 47.845 59.096 1 20.58 ? N33 21L 501 A 1 HETATM 34 O O34 21L . . . C 3 14.423 48.996 65.447 1 28.38 ? O34 21L 501 A 1 HETATM 35 O O35 21L . . . C 3 13.334 47.509 58.676 1 21.08 ? O35 21L 501 A 1 HETATM 36 O O36 21L . . . C 3 15.936 51.214 66.667 1 31.33 ? O36 21L 501 A 1 HETATM 37 O O37 21L . . . C 3 5.134 51.219 55.686 1 23.72 ? O37 21L 501 A 1 HETATM 38 O O38 21L . . . C 3 14.617 48.697 60.941 1 25.67 ? O38 21L 501 A 1 HETATM 39 O O39 21L . . . C 3 13.196 46.674 64.905 1 25.44 ? O39 21L 501 A 1 HETATM 40 O O40 21L . . . C 3 17.194 52.031 63.14 1 28.72 ? O40 21L 501 A 1 HETATM 41 O O41 21L . . . C 3 10.622 45.988 60.897 1 23.45 ? O41 21L 501 A 1 HETATM 42 O O42 21L . . . C 3 6.234 52.155 53.918 1 23.55 ? O42 21L 501 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 42 #