data_3V9Y # _model_server_result.job_id Xb1MdEPu2vxWhdJUlwmTNA _model_server_result.datetime_utc '2024-11-27 03:31:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v9y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3V9Y # _exptl.entry_id 3V9Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 571.574 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-{4-[({[(9aS)-8-acetyl-1,7-dihydroxy-3-methoxy-9a-methyl-9-oxo-9,9a-dihydrodibenzo[b,d]furan-4-yl]carbonyl}amino)methyl]naphthalen-2-yl}butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.1 _cell.angle_gamma 90 _cell.entry_id 3V9Y _cell.length_a 38.7 _cell.length_b 52.776 _cell.length_c 65.891 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V9Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H29 N O9' _chem_comp.formula_weight 571.574 _chem_comp.id 24L _chem_comp.mon_nstd_flag . _chem_comp.name '4-{4-[({[(9aS)-8-acetyl-1,7-dihydroxy-3-methoxy-9a-methyl-9-oxo-9,9a-dihydrodibenzo[b,d]furan-4-yl]carbonyl}amino)methyl]naphthalen-2-yl}butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 24L sing 1 n n C2 O3 24L doub 2 n n C2 C4 24L sing 3 n n C4 C5 24L sing 4 n n C4 C9 24L doub 5 n n C5 C6 24L sing 6 n n C5 O18 24L doub 7 n n C6 C7 24L sing 8 n n C6 C12 24L sing 9 n n C6 C17 24L sing 10 n n C7 C8 24L doub 11 n n C7 O10 24L sing 12 n n C8 C9 24L sing 13 n n C9 O19 24L sing 14 n n O10 C11 24L sing 15 n n C11 C12 24L doub 16 n y C11 C16 24L sing 17 n y C12 C13 24L sing 18 n y C13 C14 24L doub 19 n y C13 O20 24L sing 20 n n C14 C15 24L sing 21 n y C15 C16 24L doub 22 n y C15 O21 24L sing 23 n n C16 C23 24L sing 24 n n O21 C22 24L sing 25 n n C23 O24 24L doub 26 n n C23 N25 24L sing 27 n n N25 C26 24L sing 28 n n C26 C27 24L sing 29 n n C27 C28 24L doub 30 n y C27 C32 24L sing 31 n y C28 C29 24L sing 32 n y C28 C36 24L sing 33 n y C29 C30 24L doub 34 n y C29 C33 24L sing 35 n y C30 C31 24L sing 36 n y C31 C32 24L doub 37 n y C31 C37 24L sing 38 n n C33 C34 24L doub 39 n y C34 C35 24L sing 40 n y C35 C36 24L doub 41 n y C37 C38 24L sing 42 n n C38 C39 24L sing 43 n n C39 C40 24L sing 44 n n C40 O41 24L sing 45 n n C40 O42 24L doub 46 n n C1 H1 24L sing 47 n n C1 H1A 24L sing 48 n n C1 H1B 24L sing 49 n n C14 H14 24L sing 50 n n C17 H17 24L sing 51 n n C17 H17A 24L sing 52 n n C17 H17B 24L sing 53 n n O19 HO19 24L sing 54 n n O20 HO20 24L sing 55 n n C22 H22 24L sing 56 n n C22 H22A 24L sing 57 n n C22 H22B 24L sing 58 n n N25 HN25 24L sing 59 n n C26 H26 24L sing 60 n n C26 H26A 24L sing 61 n n C30 H30 24L sing 62 n n C32 H32 24L sing 63 n n C33 H33 24L sing 64 n n C34 H34 24L sing 65 n n C35 H35 24L sing 66 n n C36 H36 24L sing 67 n n C37 H37 24L sing 68 n n C37 H37A 24L sing 69 n n C38 H38 24L sing 70 n n C38 H38A 24L sing 71 n n C39 H39 24L sing 72 n n C39 H39A 24L sing 73 n n C8 H8 24L sing 74 n n O41 H41 24L sing 75 n n # _atom_sites.entry_id 3V9Y _atom_sites.fract_transf_matrix[1][1] 0.02584 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000497 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 24L A 1 501 24 24L UNL . D 4 HOH A 1 601 1 HOH HOH . D 4 HOH A 2 602 2 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 4 HOH HOH . D 4 HOH A 5 605 5 HOH HOH . D 4 HOH A 6 606 6 HOH HOH . D 4 HOH A 7 607 7 HOH HOH . D 4 HOH A 8 608 8 HOH HOH . D 4 HOH A 9 609 9 HOH HOH . D 4 HOH A 10 610 10 HOH HOH . D 4 HOH A 11 611 11 HOH HOH . D 4 HOH A 12 612 12 HOH HOH . D 4 HOH A 13 613 13 HOH HOH . D 4 HOH A 14 614 14 HOH HOH . D 4 HOH A 15 615 15 HOH HOH . D 4 HOH A 16 616 16 HOH HOH . D 4 HOH A 17 617 17 HOH HOH . D 4 HOH A 18 618 18 HOH HOH . D 4 HOH A 19 619 19 HOH HOH . D 4 HOH A 20 620 20 HOH HOH . D 4 HOH A 21 621 21 HOH HOH . D 4 HOH A 22 622 22 HOH HOH . D 4 HOH A 23 623 23 HOH HOH . D 4 HOH A 24 624 24 HOH HOH . D 4 HOH A 25 625 25 HOH HOH . D 4 HOH A 26 626 26 HOH HOH . D 4 HOH A 27 627 27 HOH HOH . D 4 HOH A 28 628 28 HOH HOH . D 4 HOH A 29 629 29 HOH HOH . D 4 HOH A 30 630 30 HOH HOH . D 4 HOH A 31 631 31 HOH HOH . D 4 HOH A 32 632 32 HOH HOH . D 4 HOH A 33 633 33 HOH HOH . D 4 HOH A 34 634 35 HOH HOH . D 4 HOH A 35 635 36 HOH HOH . D 4 HOH A 36 636 37 HOH HOH . D 4 HOH A 37 637 38 HOH HOH . D 4 HOH A 38 638 39 HOH HOH . D 4 HOH A 39 639 40 HOH HOH . D 4 HOH A 40 640 41 HOH HOH . D 4 HOH A 41 641 43 HOH HOH . D 4 HOH A 42 642 44 HOH HOH . D 4 HOH A 43 643 45 HOH HOH . D 4 HOH A 44 644 46 HOH HOH . D 4 HOH A 45 645 47 HOH HOH . D 4 HOH A 46 646 48 HOH HOH . D 4 HOH A 47 647 49 HOH HOH . D 4 HOH A 48 648 50 HOH HOH . D 4 HOH A 49 649 51 HOH HOH . D 4 HOH A 50 650 52 HOH HOH . D 4 HOH A 51 651 53 HOH HOH . D 4 HOH A 52 652 54 HOH HOH . D 4 HOH A 53 653 55 HOH HOH . D 4 HOH A 54 654 56 HOH HOH . D 4 HOH A 55 655 57 HOH HOH . D 4 HOH A 56 656 58 HOH HOH . D 4 HOH A 57 657 59 HOH HOH . D 4 HOH A 58 658 60 HOH HOH . D 4 HOH A 59 659 61 HOH HOH . D 4 HOH A 60 660 62 HOH HOH . D 4 HOH A 61 661 63 HOH HOH . D 4 HOH A 62 662 64 HOH HOH . D 4 HOH A 63 663 65 HOH HOH . D 4 HOH A 64 664 66 HOH HOH . D 4 HOH A 65 665 67 HOH HOH . D 4 HOH A 66 666 68 HOH HOH . D 4 HOH A 67 667 69 HOH HOH . D 4 HOH A 68 668 70 HOH HOH . D 4 HOH A 69 669 71 HOH HOH . D 4 HOH A 70 670 72 HOH HOH . D 4 HOH A 71 671 73 HOH HOH . D 4 HOH A 72 672 74 HOH HOH . D 4 HOH A 73 673 75 HOH HOH . D 4 HOH A 74 674 76 HOH HOH . D 4 HOH A 75 675 77 HOH HOH . D 4 HOH A 76 676 78 HOH HOH . D 4 HOH A 77 677 79 HOH HOH . D 4 HOH A 78 678 80 HOH HOH . D 4 HOH A 79 679 81 HOH HOH . D 4 HOH A 80 680 82 HOH HOH . D 4 HOH A 81 681 83 HOH HOH . D 4 HOH A 82 682 84 HOH HOH . D 4 HOH A 83 683 86 HOH HOH . D 4 HOH A 84 684 87 HOH HOH . D 4 HOH A 85 685 88 HOH HOH . D 4 HOH A 86 686 89 HOH HOH . D 4 HOH A 87 687 90 HOH HOH . D 4 HOH A 88 688 91 HOH HOH . D 4 HOH A 89 689 92 HOH HOH . D 4 HOH A 90 690 93 HOH HOH . D 4 HOH A 91 691 94 HOH HOH . D 4 HOH A 92 692 95 HOH HOH . D 4 HOH A 93 693 96 HOH HOH . D 4 HOH A 94 694 97 HOH HOH . D 4 HOH A 95 695 98 HOH HOH . D 4 HOH A 96 696 99 HOH HOH . D 4 HOH A 97 697 100 HOH HOH . D 4 HOH A 98 698 101 HOH HOH . D 4 HOH A 99 699 102 HOH HOH . D 4 HOH A 100 700 104 HOH HOH . D 4 HOH A 101 701 105 HOH HOH . D 4 HOH A 102 702 106 HOH HOH . D 4 HOH A 103 703 107 HOH HOH . D 4 HOH A 104 704 108 HOH HOH . D 4 HOH A 105 705 109 HOH HOH . D 4 HOH A 106 706 110 HOH HOH . D 4 HOH A 107 707 111 HOH HOH . D 4 HOH A 108 708 112 HOH HOH . D 4 HOH A 109 709 113 HOH HOH . D 4 HOH A 110 710 114 HOH HOH . D 4 HOH A 111 711 115 HOH HOH . D 4 HOH A 112 712 116 HOH HOH . D 4 HOH A 113 713 117 HOH HOH . D 4 HOH A 114 714 118 HOH HOH . D 4 HOH A 115 715 119 HOH HOH . D 4 HOH A 116 716 120 HOH HOH . D 4 HOH A 117 717 121 HOH HOH . D 4 HOH A 118 718 122 HOH HOH . D 4 HOH A 119 719 123 HOH HOH . D 4 HOH A 120 720 124 HOH HOH . D 4 HOH A 121 721 125 HOH HOH . D 4 HOH A 122 722 126 HOH HOH . D 4 HOH A 123 723 127 HOH HOH . D 4 HOH A 124 724 128 HOH HOH . D 4 HOH A 125 725 129 HOH HOH . D 4 HOH A 126 726 130 HOH HOH . D 4 HOH A 127 727 131 HOH HOH . D 4 HOH A 128 728 132 HOH HOH . D 4 HOH A 129 729 133 HOH HOH . D 4 HOH A 130 730 134 HOH HOH . D 4 HOH A 131 731 135 HOH HOH . D 4 HOH A 132 732 136 HOH HOH . D 4 HOH A 133 733 137 HOH HOH . D 4 HOH A 134 734 138 HOH HOH . D 4 HOH A 135 735 139 HOH HOH . D 4 HOH A 136 736 140 HOH HOH . D 4 HOH A 137 737 141 HOH HOH . D 4 HOH A 138 738 142 HOH HOH . D 4 HOH A 139 739 143 HOH HOH . D 4 HOH A 140 740 144 HOH HOH . D 4 HOH A 141 741 145 HOH HOH . D 4 HOH A 142 742 146 HOH HOH . D 4 HOH A 143 743 147 HOH HOH . D 4 HOH A 144 744 148 HOH HOH . D 4 HOH A 145 745 149 HOH HOH . D 4 HOH A 146 746 150 HOH HOH . D 4 HOH A 147 747 151 HOH HOH . D 4 HOH A 148 748 153 HOH HOH . D 4 HOH A 149 749 154 HOH HOH . D 4 HOH A 150 750 155 HOH HOH . D 4 HOH A 151 751 156 HOH HOH . D 4 HOH A 152 752 157 HOH HOH . D 4 HOH A 153 753 158 HOH HOH . D 4 HOH A 154 754 159 HOH HOH . D 4 HOH A 155 755 160 HOH HOH . D 4 HOH A 156 756 161 HOH HOH . D 4 HOH A 157 757 162 HOH HOH . D 4 HOH A 158 758 163 HOH HOH . D 4 HOH A 159 759 164 HOH HOH . D 4 HOH A 160 760 165 HOH HOH . D 4 HOH A 161 761 166 HOH HOH . D 4 HOH A 162 762 167 HOH HOH . D 4 HOH A 163 763 168 HOH HOH . E 4 HOH B 1 801 34 HOH HOH . E 4 HOH B 2 802 42 HOH HOH . E 4 HOH B 3 803 85 HOH HOH . E 4 HOH B 4 804 103 HOH HOH . E 4 HOH B 5 805 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 24L . . . C 3 18.656 51.856 64.917 1 33.91 ? C1 24L 501 A 1 HETATM 2 C C2 24L . . . C 3 17.338 51.078 65.003 1 33.55 ? C2 24L 501 A 1 HETATM 3 O O3 24L . . . C 3 16.774 50.928 66.083 1 36.04 ? O3 24L 501 A 1 HETATM 4 C C4 24L . . . C 3 16.73 50.507 63.732 1 31.88 ? C4 24L 501 A 1 HETATM 5 C C5 24L . . . C 3 15.887 49.197 63.843 1 28.97 ? C5 24L 501 A 1 HETATM 6 C C6 24L . . . C 3 15.818 48.354 62.514 1 27.58 ? C6 24L 501 A 1 HETATM 7 C C7 24L . . . C 3 15.813 49.306 61.307 1 28.02 ? C7 24L 501 A 1 HETATM 8 C C8 24L . . . C 3 16.322 50.57 61.349 1 29.92 ? C8 24L 501 A 1 HETATM 9 C C9 24L . . . C 3 16.875 51.076 62.489 1 31.38 ? C9 24L 501 A 1 HETATM 10 O O10 24L . . . C 3 15.243 48.771 60.191 1 25.98 ? O10 24L 501 A 1 HETATM 11 C C11 24L . . . C 3 14.287 47.92 60.732 1 26.23 ? C11 24L 501 A 1 HETATM 12 C C12 24L . . . C 3 14.542 47.631 62.072 1 26.66 ? C12 24L 501 A 1 HETATM 13 C C13 24L . . . C 3 13.687 46.791 62.786 1 26.27 ? C13 24L 501 A 1 HETATM 14 C C14 24L . . . C 3 12.575 46.238 62.155 1 26.04 ? C14 24L 501 A 1 HETATM 15 C C15 24L . . . C 3 12.302 46.518 60.796 1 25.6 ? C15 24L 501 A 1 HETATM 16 C C16 24L . . . C 3 13.173 47.381 60.059 1 24.42 ? C16 24L 501 A 1 HETATM 17 C C17 24L . . . C 3 17.04 47.403 62.454 1 26.22 ? C17 24L 501 A 1 HETATM 18 O O18 24L . . . C 3 15.358 48.825 64.884 1 30.49 ? O18 24L 501 A 1 HETATM 19 O O19 24L . . . C 3 17.608 52.225 62.349 1 32.34 ? O19 24L 501 A 1 HETATM 20 O O20 24L . . . C 3 13.918 46.493 64.102 1 27.2 ? O20 24L 501 A 1 HETATM 21 O O21 24L . . . C 3 11.187 45.971 60.141 1 25.54 ? O21 24L 501 A 1 HETATM 22 C C22 24L . . . C 3 10.42 44.818 60.572 1 23.5 ? C22 24L 501 A 1 HETATM 23 C C23 24L . . . C 3 13.008 47.778 58.589 1 23.27 ? C23 24L 501 A 1 HETATM 24 O O24 24L . . . C 3 13.869 47.526 57.748 1 21.94 ? O24 24L 501 A 1 HETATM 25 N N25 24L . . . C 3 11.9 48.44 58.221 1 23.52 ? N25 24L 501 A 1 HETATM 26 C C26 24L . . . C 3 11.286 48.359 56.886 1 24.51 ? C26 24L 501 A 1 HETATM 27 C C27 24L . . . C 3 9.773 48.628 56.892 1 24.56 ? C27 24L 501 A 1 HETATM 28 C C28 24L . . . C 3 8.877 47.559 56.977 1 23.71 ? C28 24L 501 A 1 HETATM 29 C C29 24L . . . C 3 7.471 47.812 56.987 1 23.46 ? C29 24L 501 A 1 HETATM 30 C C30 24L . . . C 3 7.003 49.131 56.91 1 24.24 ? C30 24L 501 A 1 HETATM 31 C C31 24L . . . C 3 7.916 50.188 56.825 1 26.11 ? C31 24L 501 A 1 HETATM 32 C C32 24L . . . C 3 9.287 49.936 56.816 1 25.18 ? C32 24L 501 A 1 HETATM 33 C C33 24L . . . C 3 6.58 46.735 57.072 1 22.56 ? C33 24L 501 A 1 HETATM 34 C C34 24L . . . C 3 7.072 45.427 57.148 1 22.23 ? C34 24L 501 A 1 HETATM 35 C C35 24L . . . C 3 8.448 45.178 57.139 1 22.18 ? C35 24L 501 A 1 HETATM 36 C C36 24L . . . C 3 9.357 46.233 57.054 1 22.78 ? C36 24L 501 A 1 HETATM 37 C C37 24L . . . C 3 7.417 51.642 56.734 1 28.39 ? C37 24L 501 A 1 HETATM 38 C C38 24L . . . C 3 6.83 52.184 58.047 1 31.21 ? C38 24L 501 A 1 HETATM 39 C C39 24L . . . C 3 7.171 53.667 58.279 1 31.16 ? C39 24L 501 A 1 HETATM 40 C C40 24L . . . C 3 6.641 54.59 57.172 1 32.74 ? C40 24L 501 A 1 HETATM 41 O O41 24L . . . C 3 7.47 54.638 56.082 1 31.64 ? O41 24L 501 A 1 HETATM 42 O O42 24L . . . C 3 5.599 55.233 57.274 1 34.22 ? O42 24L 501 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 42 #