data_3VA8 # _model_server_result.job_id J6oaKmbs6PjJKkpVxGE3Xg _model_server_result.datetime_utc '2025-05-21 02:19:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3va8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":426}' # _entry.id 3VA8 # _exptl.entry_id 3VA8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3VA8 _cell.length_a 135.669 _cell.length_b 135.669 _cell.length_c 164.246 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VA8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 17_555 x-y+1/3,-y+2/3,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 78.328534 109.497333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 242 A ASP 220 1_555 C MG MG . A MG 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc2 A OE2 GLU 267 A GLU 245 1_555 C MG MG . A MG 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? metalc ? metalc3 A OD1 ASN 290 A ASN 268 1_555 C MG MG . A MG 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc4 C MG MG . A MG 425 1_555 D O1 FMT . A FMT 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc5 C MG MG . A MG 425 1_555 D O2 FMT . A FMT 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc6 C MG MG . A MG 425 1_555 E O HOH . A HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 83 n n C O2 FMT sing 84 n n C H FMT sing 85 n n O2 HO2 FMT sing 86 n n # _atom_sites.entry_id 3VA8 _atom_sites.fract_transf_matrix[1][1] 0.007371 _atom_sites.fract_transf_matrix[1][2] 0.004256 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008511 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006088 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 424 1 SO4 SO4 . C 3 MG A 1 425 1 MG MG . D 4 FMT A 1 426 1 FMT FMT . E 5 HOH A 1 427 2 HOH HOH . E 5 HOH A 2 428 3 HOH HOH . E 5 HOH A 3 429 5 HOH HOH . E 5 HOH A 4 430 7 HOH HOH . E 5 HOH A 5 431 8 HOH HOH . E 5 HOH A 6 432 10 HOH HOH . E 5 HOH A 7 433 14 HOH HOH . E 5 HOH A 8 434 15 HOH HOH . E 5 HOH A 9 435 17 HOH HOH . E 5 HOH A 10 436 19 HOH HOH . E 5 HOH A 11 437 20 HOH HOH . E 5 HOH A 12 438 21 HOH HOH . E 5 HOH A 13 439 22 HOH HOH . E 5 HOH A 14 440 23 HOH HOH . E 5 HOH A 15 441 24 HOH HOH . E 5 HOH A 16 442 25 HOH HOH . E 5 HOH A 17 443 26 HOH HOH . E 5 HOH A 18 444 27 HOH HOH . E 5 HOH A 19 445 28 HOH HOH . E 5 HOH A 20 446 29 HOH HOH . E 5 HOH A 21 447 30 HOH HOH . E 5 HOH A 22 448 31 HOH HOH . E 5 HOH A 23 449 32 HOH HOH . E 5 HOH A 24 450 33 HOH HOH . E 5 HOH A 25 451 34 HOH HOH . E 5 HOH A 26 452 35 HOH HOH . E 5 HOH A 27 453 37 HOH HOH . E 5 HOH A 28 454 38 HOH HOH . E 5 HOH A 29 455 40 HOH HOH . E 5 HOH A 30 456 41 HOH HOH . E 5 HOH A 31 457 43 HOH HOH . E 5 HOH A 32 458 44 HOH HOH . E 5 HOH A 33 459 45 HOH HOH . E 5 HOH A 34 460 46 HOH HOH . E 5 HOH A 35 461 49 HOH HOH . E 5 HOH A 36 462 50 HOH HOH . E 5 HOH A 37 463 51 HOH HOH . E 5 HOH A 38 464 52 HOH HOH . E 5 HOH A 39 465 53 HOH HOH . E 5 HOH A 40 466 54 HOH HOH . E 5 HOH A 41 467 55 HOH HOH . E 5 HOH A 42 468 56 HOH HOH . E 5 HOH A 43 469 58 HOH HOH . E 5 HOH A 44 470 59 HOH HOH . E 5 HOH A 45 471 60 HOH HOH . E 5 HOH A 46 472 62 HOH HOH . E 5 HOH A 47 473 63 HOH HOH . E 5 HOH A 48 474 64 HOH HOH . E 5 HOH A 49 475 65 HOH HOH . E 5 HOH A 50 476 66 HOH HOH . E 5 HOH A 51 477 67 HOH HOH . E 5 HOH A 52 478 68 HOH HOH . E 5 HOH A 53 479 69 HOH HOH . E 5 HOH A 54 480 70 HOH HOH . E 5 HOH A 55 481 71 HOH HOH . E 5 HOH A 56 482 73 HOH HOH . E 5 HOH A 57 483 74 HOH HOH . E 5 HOH A 58 484 75 HOH HOH . E 5 HOH A 59 485 78 HOH HOH . E 5 HOH A 60 486 79 HOH HOH . E 5 HOH A 61 487 80 HOH HOH . E 5 HOH A 62 488 81 HOH HOH . E 5 HOH A 63 489 83 HOH HOH . E 5 HOH A 64 490 84 HOH HOH . E 5 HOH A 65 491 85 HOH HOH . E 5 HOH A 66 492 86 HOH HOH . E 5 HOH A 67 493 87 HOH HOH . E 5 HOH A 68 494 88 HOH HOH . E 5 HOH A 69 495 89 HOH HOH . E 5 HOH A 70 496 90 HOH HOH . E 5 HOH A 71 497 91 HOH HOH . E 5 HOH A 72 498 92 HOH HOH . E 5 HOH A 73 499 93 HOH HOH . E 5 HOH A 74 500 94 HOH HOH . E 5 HOH A 75 501 96 HOH HOH . E 5 HOH A 76 502 98 HOH HOH . E 5 HOH A 77 503 100 HOH HOH . E 5 HOH A 78 504 101 HOH HOH . E 5 HOH A 79 505 102 HOH HOH . E 5 HOH A 80 506 103 HOH HOH . E 5 HOH A 81 507 106 HOH HOH . E 5 HOH A 82 508 107 HOH HOH . E 5 HOH A 83 509 108 HOH HOH . E 5 HOH A 84 510 109 HOH HOH . E 5 HOH A 85 511 111 HOH HOH . E 5 HOH A 86 512 112 HOH HOH . E 5 HOH A 87 513 113 HOH HOH . E 5 HOH A 88 514 119 HOH HOH . E 5 HOH A 89 515 121 HOH HOH . E 5 HOH A 90 516 124 HOH HOH . E 5 HOH A 91 517 125 HOH HOH . E 5 HOH A 92 518 126 HOH HOH . E 5 HOH A 93 519 127 HOH HOH . E 5 HOH A 94 520 128 HOH HOH . E 5 HOH A 95 521 129 HOH HOH . E 5 HOH A 96 522 130 HOH HOH . E 5 HOH A 97 523 133 HOH HOH . E 5 HOH A 98 524 134 HOH HOH . E 5 HOH A 99 525 135 HOH HOH . E 5 HOH A 100 526 136 HOH HOH . E 5 HOH A 101 527 137 HOH HOH . E 5 HOH A 102 528 138 HOH HOH . E 5 HOH A 103 529 140 HOH HOH . E 5 HOH A 104 530 141 HOH HOH . E 5 HOH A 105 531 143 HOH HOH . E 5 HOH A 106 532 144 HOH HOH . E 5 HOH A 107 533 145 HOH HOH . E 5 HOH A 108 534 146 HOH HOH . E 5 HOH A 109 535 148 HOH HOH . E 5 HOH A 110 536 149 HOH HOH . E 5 HOH A 111 537 150 HOH HOH . E 5 HOH A 112 538 151 HOH HOH . E 5 HOH A 113 539 152 HOH HOH . E 5 HOH A 114 540 153 HOH HOH . E 5 HOH A 115 541 154 HOH HOH . E 5 HOH A 116 542 155 HOH HOH . E 5 HOH A 117 543 156 HOH HOH . E 5 HOH A 118 544 157 HOH HOH . E 5 HOH A 119 545 158 HOH HOH . E 5 HOH A 120 546 159 HOH HOH . E 5 HOH A 121 547 162 HOH HOH . E 5 HOH A 122 548 163 HOH HOH . E 5 HOH A 123 549 164 HOH HOH . E 5 HOH A 124 550 165 HOH HOH . E 5 HOH A 125 551 166 HOH HOH . E 5 HOH A 126 552 169 HOH HOH . E 5 HOH A 127 553 171 HOH HOH . E 5 HOH A 128 554 172 HOH HOH . E 5 HOH A 129 555 176 HOH HOH . E 5 HOH A 130 556 177 HOH HOH . E 5 HOH A 131 557 181 HOH HOH . E 5 HOH A 132 558 182 HOH HOH . E 5 HOH A 133 559 186 HOH HOH . E 5 HOH A 134 560 188 HOH HOH . E 5 HOH A 135 561 189 HOH HOH . E 5 HOH A 136 562 191 HOH HOH . E 5 HOH A 137 563 192 HOH HOH . E 5 HOH A 138 564 193 HOH HOH . E 5 HOH A 139 565 194 HOH HOH . E 5 HOH A 140 566 195 HOH HOH . E 5 HOH A 141 567 196 HOH HOH . E 5 HOH A 142 568 197 HOH HOH . E 5 HOH A 143 569 198 HOH HOH . E 5 HOH A 144 570 199 HOH HOH . E 5 HOH A 145 571 200 HOH HOH . E 5 HOH A 146 572 201 HOH HOH . E 5 HOH A 147 573 202 HOH HOH . E 5 HOH A 148 574 203 HOH HOH . E 5 HOH A 149 575 204 HOH HOH . E 5 HOH A 150 576 205 HOH HOH . E 5 HOH A 151 577 207 HOH HOH . E 5 HOH A 152 578 208 HOH HOH . E 5 HOH A 153 579 210 HOH HOH . E 5 HOH A 154 580 211 HOH HOH . E 5 HOH A 155 581 213 HOH HOH . E 5 HOH A 156 582 216 HOH HOH . E 5 HOH A 157 583 220 HOH HOH . E 5 HOH A 158 584 221 HOH HOH . E 5 HOH A 159 585 223 HOH HOH . E 5 HOH A 160 586 228 HOH HOH . E 5 HOH A 161 587 232 HOH HOH . E 5 HOH A 162 588 235 HOH HOH . E 5 HOH A 163 589 237 HOH HOH . E 5 HOH A 164 590 238 HOH HOH . E 5 HOH A 165 591 239 HOH HOH . E 5 HOH A 166 592 241 HOH HOH . E 5 HOH A 167 593 244 HOH HOH . E 5 HOH A 168 594 245 HOH HOH . E 5 HOH A 169 595 246 HOH HOH . E 5 HOH A 170 596 247 HOH HOH . E 5 HOH A 171 597 248 HOH HOH . E 5 HOH A 172 598 249 HOH HOH . E 5 HOH A 173 599 250 HOH HOH . E 5 HOH A 174 600 251 HOH HOH . E 5 HOH A 175 601 252 HOH HOH . E 5 HOH A 176 602 253 HOH HOH . E 5 HOH A 177 603 254 HOH HOH . E 5 HOH A 178 604 255 HOH HOH . E 5 HOH A 179 605 256 HOH HOH . E 5 HOH A 180 606 257 HOH HOH . E 5 HOH A 181 607 258 HOH HOH . E 5 HOH A 182 608 260 HOH HOH . E 5 HOH A 183 609 261 HOH HOH . E 5 HOH A 184 610 262 HOH HOH . E 5 HOH A 185 611 263 HOH HOH . E 5 HOH A 186 612 264 HOH HOH . E 5 HOH A 187 613 265 HOH HOH . E 5 HOH A 188 614 266 HOH HOH . E 5 HOH A 189 615 267 HOH HOH . E 5 HOH A 190 616 268 HOH HOH . E 5 HOH A 191 617 269 HOH HOH . E 5 HOH A 192 618 270 HOH HOH . E 5 HOH A 193 619 271 HOH HOH . E 5 HOH A 194 620 272 HOH HOH . E 5 HOH A 195 621 273 HOH HOH . E 5 HOH A 196 622 274 HOH HOH . E 5 HOH A 197 623 275 HOH HOH . E 5 HOH A 198 624 276 HOH HOH . E 5 HOH A 199 625 277 HOH HOH . E 5 HOH A 200 626 278 HOH HOH . E 5 HOH A 201 627 281 HOH HOH . E 5 HOH A 202 628 282 HOH HOH . E 5 HOH A 203 629 283 HOH HOH . E 5 HOH A 204 630 284 HOH HOH . E 5 HOH A 205 631 285 HOH HOH . E 5 HOH A 206 632 286 HOH HOH . E 5 HOH A 207 633 287 HOH HOH . E 5 HOH A 208 634 288 HOH HOH . E 5 HOH A 209 635 289 HOH HOH . E 5 HOH A 210 636 290 HOH HOH . E 5 HOH A 211 637 291 HOH HOH . E 5 HOH A 212 638 292 HOH HOH . E 5 HOH A 213 639 293 HOH HOH . E 5 HOH A 214 640 294 HOH HOH . E 5 HOH A 215 641 295 HOH HOH . E 5 HOH A 216 642 296 HOH HOH . E 5 HOH A 217 643 297 HOH HOH . E 5 HOH A 218 644 298 HOH HOH . E 5 HOH A 219 645 299 HOH HOH . E 5 HOH A 220 646 300 HOH HOH . E 5 HOH A 221 647 301 HOH HOH . E 5 HOH A 222 648 302 HOH HOH . E 5 HOH A 223 649 303 HOH HOH . E 5 HOH A 224 650 304 HOH HOH . E 5 HOH A 225 651 305 HOH HOH . E 5 HOH A 226 652 306 HOH HOH . E 5 HOH A 227 653 307 HOH HOH . E 5 HOH A 228 654 308 HOH HOH . E 5 HOH A 229 655 309 HOH HOH . E 5 HOH A 230 656 310 HOH HOH . E 5 HOH A 231 657 311 HOH HOH . E 5 HOH A 232 658 312 HOH HOH . E 5 HOH A 233 659 313 HOH HOH . E 5 HOH A 234 660 314 HOH HOH . E 5 HOH A 235 661 315 HOH HOH . E 5 HOH A 236 662 316 HOH HOH . E 5 HOH A 237 663 317 HOH HOH . E 5 HOH A 238 664 318 HOH HOH . E 5 HOH A 239 665 319 HOH HOH . E 5 HOH A 240 666 320 HOH HOH . E 5 HOH A 241 667 321 HOH HOH . E 5 HOH A 242 668 322 HOH HOH . E 5 HOH A 243 669 323 HOH HOH . E 5 HOH A 244 670 324 HOH HOH . E 5 HOH A 245 671 325 HOH HOH . E 5 HOH A 246 672 326 HOH HOH . E 5 HOH A 247 673 327 HOH HOH . E 5 HOH A 248 674 328 HOH HOH . E 5 HOH A 249 675 329 HOH HOH . E 5 HOH A 250 676 330 HOH HOH . E 5 HOH A 251 677 331 HOH HOH . E 5 HOH A 252 678 332 HOH HOH . E 5 HOH A 253 679 333 HOH HOH . E 5 HOH A 254 680 334 HOH HOH . E 5 HOH A 255 681 335 HOH HOH . E 5 HOH A 256 682 336 HOH HOH . E 5 HOH A 257 683 337 HOH HOH . E 5 HOH A 258 684 338 HOH HOH . E 5 HOH A 259 685 339 HOH HOH . E 5 HOH A 260 686 340 HOH HOH . E 5 HOH A 261 687 341 HOH HOH . E 5 HOH A 262 688 342 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . D 4 -8.342 30.033 33.241 1 49.12 ? C FMT 426 A 1 HETATM 2 O O1 FMT . . . D 4 -8.091 29.322 34.237 1 42.29 ? O1 FMT 426 A 1 HETATM 3 O O2 FMT . . . D 4 -9.391 30.685 33.055 1 38.05 ? O2 FMT 426 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #