data_3VAD # _model_server_result.job_id BQD-x7scz7VvV0HdIf4uyA _model_server_result.datetime_utc '2024-11-15 15:00:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vad # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 3VAD # _exptl.entry_id 3VAD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.098 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3,6-dichloro-1-benzothiophene-2-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VAD _cell.length_a 128.079 _cell.length_b 128.079 _cell.length_c 74.035 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VAD _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 279 A ASN 249 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc2 A O VAL 328 A VAL 298 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc3 A O ASP 330 A ASP 300 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc4 A O PHE 333 A PHE 303 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc5 A O GLY 367 A GLY 337 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc6 B O2A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc7 B O2B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc8 B O1A ADP . A ADP 401 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc9 C MG MG . A MG 402 1_555 G O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc10 C MG MG . A MG 402 1_555 G O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? # _chem_comp.formula 'C9 H4 Cl2 O2 S' _chem_comp.formula_weight 247.098 _chem_comp.id 0F1 _chem_comp.mon_nstd_flag . _chem_comp.name '3,6-dichloro-1-benzothiophene-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C9 0F1 doub 1 n n O1 C9 0F1 sing 2 n n C9 C7 0F1 sing 3 n n CL2 C8 0F1 sing 4 n n C7 C8 0F1 doub 5 n y C7 S 0F1 sing 6 n y C8 C5 0F1 sing 7 n y S C4 0F1 sing 8 n y C5 C4 0F1 doub 9 n y C5 C6 0F1 sing 10 n y C4 C3 0F1 sing 11 n y C6 C1 0F1 doub 12 n y C3 C2 0F1 doub 13 n y C1 C2 0F1 sing 14 n y C2 CL1 0F1 sing 15 n n C1 H1 0F1 sing 16 n n C6 H2 0F1 sing 17 n n C3 H3 0F1 sing 18 n n O1 H4 0F1 sing 19 n n # _atom_sites.entry_id 3VAD _atom_sites.fract_transf_matrix[1][1] 0.007808 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007808 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013507 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 1 ADP ADP . C 3 MG A 1 402 1 MG MG . D 4 K A 1 403 1 K K . E 5 0F1 A 1 404 1 0F1 BT2 . F 5 0F1 A 1 405 1 0F1 BT2 . G 6 HOH A 1 501 1 HOH HOH . G 6 HOH A 2 502 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL1 0F1 . . . F 5 -8.326 -24.282 15.285 0.52 122.18 ? CL1 0F1 405 A 1 HETATM 2 C C2 0F1 . . . F 5 -8.405 -26.006 14.81 0.52 121.19 ? C2 0F1 405 A 1 HETATM 3 C C1 0F1 . . . F 5 -7.975 -26.411 13.541 0.52 121.05 ? C1 0F1 405 A 1 HETATM 4 C C6 0F1 . . . F 5 -8.023 -27.748 13.144 0.52 120.98 ? C6 0F1 405 A 1 HETATM 5 C C3 0F1 . . . F 5 -8.905 -26.918 15.733 0.52 121.21 ? C3 0F1 405 A 1 HETATM 6 C C4 0F1 . . . F 5 -8.966 -28.249 15.364 0.52 121.17 ? C4 0F1 405 A 1 HETATM 7 C C5 0F1 . . . F 5 -8.511 -28.697 14.034 0.52 121.02 ? C5 0F1 405 A 1 HETATM 8 C C8 0F1 . . . F 5 -8.701 -30.19 13.93 0.52 121.27 ? C8 0F1 405 A 1 HETATM 9 CL CL2 0F1 . . . F 5 -8.302 -31.261 12.477 0.52 121.26 ? CL2 0F1 405 A 1 HETATM 10 S S 0F1 . . . F 5 -9.526 -29.443 16.294 0.52 121.6 ? S 0F1 405 A 1 HETATM 11 C C7 0F1 . . . F 5 -9.288 -30.706 15.215 0.52 121.3 ? C7 0F1 405 A 1 HETATM 12 C C9 0F1 . . . F 5 -9.576 -32.145 15.432 0.52 121.26 ? C9 0F1 405 A 1 HETATM 13 O O1 0F1 . . . F 5 -10.688 -32.48 15.889 0.52 121.17 ? O1 0F1 405 A 1 HETATM 14 O O2 0F1 . . . F 5 -8.673 -32.973 15.179 0.52 121.23 ? O2 0F1 405 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #