data_3VAH
#
_model_server_result.job_id            c3Htmh4grW-puneWah948Q 
_model_server_result.datetime_utc      '2024-11-17 01:59:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vah 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":403}' 
#
_entry.id    3VAH 
#
_exptl.entry_id    3VAH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.105 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIETHYLENE DIOXIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          125.61 
_cell.angle_gamma         90 
_cell.entry_id            3VAH 
_cell.length_a            166.238 
_cell.length_b            37.304 
_cell.length_c            101.31 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VAH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C O3' DU 2 E DU 2 1_555 C P BRU 3 E BRU 3 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.591 ? 
covale ? covale2 C O3' DU 2 E DU 2 1_555 C P BRU 3 E BRU 3 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.595 ? 
covale ? covale3 C O3' BRU 3 E BRU 3 1_555 C P DC 4 E DC 4 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.595 ? 
covale ? covale4 C O3' BRU 3 E BRU 3 1_555 C P DC 4 E DC 4 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.605 ? 
covale ? covale5 D O3' DU 2 P DU 3 1_555 D P BRU 3 P BRU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? 
covale ? covale6 D O3' BRU 3 P BRU 4 1_555 D P DC 4 P DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? 
#
_chem_comp.formula           'C4 H8 O2' 
_chem_comp.formula_weight    88.105 
_chem_comp.id                DIO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIETHYLENE DIOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C1' DIO sing 290 n n 
C1 O1 DIO sing 291 n n 
C1 H11 DIO sing 292 n n 
C1 H12 DIO sing 293 n n 
C2 C2' DIO sing 294 n n 
C2 O1 DIO sing 295 n n 
C2 H21 DIO sing 296 n n 
C2 H22 DIO sing 297 n n 
C1' O1' DIO sing 298 n n 
C1' "H1'1" DIO sing 299 n n 
C1' "H1'2" DIO sing 300 n n 
C2' O1' DIO sing 301 n n 
C2' "H2'1" DIO sing 302 n n 
C2' "H2'2" DIO sing 303 n n 
#
_atom_sites.entry_id                     3VAH 
_atom_sites.fract_transf_matrix[1][1]    0.006015 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004308 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026807 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012141 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 DIO A 1 401 8 DIO DIO . 
F 4 SO4 A 1 402 5 SO4 SO4 . 
G 4 SO4 A 1 403 10 SO4 SO4 . 
H 3 DIO B 1 401 1 DIO DIO . 
I 3 DIO B 1 402 4 DIO DIO . 
J 3 DIO B 1 403 7 DIO DIO . 
K 5 CPQ B 1 404 101 CPQ CPQ . 
L 4 SO4 B 1 405 1 SO4 SO4 . 
M 4 SO4 B 1 406 6 SO4 SO4 . 
N 4 SO4 B 1 407 9 SO4 SO4 . 
O 6 GOL B 1 408 2 GOL GOL . 
P 7 HOH A 1 501 1 HOH HOH . 
P 7 HOH A 2 502 3 HOH HOH . 
P 7 HOH A 3 503 6 HOH HOH . 
P 7 HOH A 4 504 10 HOH HOH . 
P 7 HOH A 5 505 11 HOH HOH . 
P 7 HOH A 6 506 12 HOH HOH . 
P 7 HOH A 7 507 13 HOH HOH . 
P 7 HOH A 8 508 15 HOH HOH . 
P 7 HOH A 9 509 17 HOH HOH . 
P 7 HOH A 10 510 18 HOH HOH . 
P 7 HOH A 11 511 20 HOH HOH . 
P 7 HOH A 12 512 22 HOH HOH . 
P 7 HOH A 13 513 24 HOH HOH . 
P 7 HOH A 14 514 28 HOH HOH . 
P 7 HOH A 15 515 33 HOH HOH . 
P 7 HOH A 16 516 35 HOH HOH . 
P 7 HOH A 17 517 36 HOH HOH . 
P 7 HOH A 18 518 39 HOH HOH . 
P 7 HOH A 19 519 40 HOH HOH . 
P 7 HOH A 20 520 41 HOH HOH . 
P 7 HOH A 21 521 43 HOH HOH . 
P 7 HOH A 22 522 44 HOH HOH . 
P 7 HOH A 23 523 46 HOH HOH . 
P 7 HOH A 24 524 48 HOH HOH . 
P 7 HOH A 25 525 52 HOH HOH . 
P 7 HOH A 26 526 53 HOH HOH . 
P 7 HOH A 27 527 54 HOH HOH . 
P 7 HOH A 28 528 55 HOH HOH . 
P 7 HOH A 29 529 60 HOH HOH . 
P 7 HOH A 30 530 61 HOH HOH . 
P 7 HOH A 31 531 64 HOH HOH . 
P 7 HOH A 32 532 65 HOH HOH . 
P 7 HOH A 33 533 68 HOH HOH . 
P 7 HOH A 34 534 69 HOH HOH . 
P 7 HOH A 35 535 71 HOH HOH . 
P 7 HOH A 36 536 72 HOH HOH . 
P 7 HOH A 37 537 74 HOH HOH . 
P 7 HOH A 38 538 75 HOH HOH . 
P 7 HOH A 39 539 76 HOH HOH . 
P 7 HOH A 40 540 78 HOH HOH . 
P 7 HOH A 41 541 79 HOH HOH . 
P 7 HOH A 42 542 80 HOH HOH . 
P 7 HOH A 43 543 81 HOH HOH . 
P 7 HOH A 44 544 82 HOH HOH . 
P 7 HOH A 45 545 85 HOH HOH . 
P 7 HOH A 46 546 93 HOH HOH . 
P 7 HOH A 47 547 94 HOH HOH . 
P 7 HOH A 48 548 95 HOH HOH . 
Q 7 HOH B 1 501 2 HOH HOH . 
Q 7 HOH B 2 502 4 HOH HOH . 
Q 7 HOH B 3 503 5 HOH HOH . 
Q 7 HOH B 4 504 7 HOH HOH . 
Q 7 HOH B 5 505 8 HOH HOH . 
Q 7 HOH B 6 506 9 HOH HOH . 
Q 7 HOH B 7 507 14 HOH HOH . 
Q 7 HOH B 8 508 16 HOH HOH . 
Q 7 HOH B 9 509 19 HOH HOH . 
Q 7 HOH B 10 510 21 HOH HOH . 
Q 7 HOH B 11 511 23 HOH HOH . 
Q 7 HOH B 12 512 27 HOH HOH . 
Q 7 HOH B 13 513 29 HOH HOH . 
Q 7 HOH B 14 514 30 HOH HOH . 
Q 7 HOH B 15 515 32 HOH HOH . 
Q 7 HOH B 16 516 38 HOH HOH . 
Q 7 HOH B 17 517 42 HOH HOH . 
Q 7 HOH B 18 518 45 HOH HOH . 
Q 7 HOH B 19 519 47 HOH HOH . 
Q 7 HOH B 20 520 49 HOH HOH . 
Q 7 HOH B 21 521 51 HOH HOH . 
Q 7 HOH B 22 522 56 HOH HOH . 
Q 7 HOH B 23 523 57 HOH HOH . 
Q 7 HOH B 24 524 58 HOH HOH . 
Q 7 HOH B 25 525 59 HOH HOH . 
Q 7 HOH B 26 526 62 HOH HOH . 
Q 7 HOH B 27 527 63 HOH HOH . 
Q 7 HOH B 28 528 66 HOH HOH . 
Q 7 HOH B 29 529 67 HOH HOH . 
Q 7 HOH B 30 530 70 HOH HOH . 
Q 7 HOH B 31 531 83 HOH HOH . 
Q 7 HOH B 32 532 86 HOH HOH . 
Q 7 HOH B 33 533 89 HOH HOH . 
Q 7 HOH B 34 534 90 HOH HOH . 
Q 7 HOH B 35 535 91 HOH HOH . 
Q 7 HOH B 36 536 92 HOH HOH . 
R 7 HOH E 1 101 25 HOH HOH . 
R 7 HOH E 2 102 31 HOH HOH . 
R 7 HOH E 3 103 77 HOH HOH . 
S 7 HOH P 1 101 26 HOH HOH . 
S 7 HOH P 2 102 34 HOH HOH . 
S 7 HOH P 3 103 37 HOH HOH . 
S 7 HOH P 4 104 50 HOH HOH . 
S 7 HOH P 5 105 73 HOH HOH . 
S 7 HOH P 6 106 84 HOH HOH . 
S 7 HOH P 7 107 87 HOH HOH . 
S 7 HOH P 8 108 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DIO . . . J 3 -4.69 -8.439 5.28 1 48.45 ? C1 DIO 403 B 1 
HETATM 2 C C2 DIO . . . J 3 -5.709 -6.566 4.215 1 48.3 ? C2 DIO 403 B 1 
HETATM 3 C C1' DIO . . . J 3 -4.439 -9.104 3.924 1 48.37 ? C1' DIO 403 B 1 
HETATM 4 C C2' DIO . . . J 3 -5.484 -7.233 2.854 1 48.7 ? C2' DIO 403 B 1 
HETATM 5 O O1 DIO . . . J 3 -5.828 -7.557 5.236 1 47.38 ? O1 DIO 403 B 1 
HETATM 6 O O1' DIO . . . J 3 -4.338 -8.098 2.906 1 48.88 ? O1' DIO 403 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#