data_3VAH # _model_server_result.job_id OFQXbRp_oEWRTzyRKq-7kA _model_server_result.datetime_utc '2024-11-17 02:00:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vah # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":405}' # _entry.id 3VAH # _exptl.entry_id 3VAH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.61 _cell.angle_gamma 90 _cell.entry_id 3VAH _cell.length_a 166.238 _cell.length_b 37.304 _cell.length_c 101.31 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VAH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 L N N ? 4 M N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3' DU 2 E DU 2 1_555 C P BRU 3 E BRU 3 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.591 ? covale ? covale2 C O3' DU 2 E DU 2 1_555 C P BRU 3 E BRU 3 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.595 ? covale ? covale3 C O3' BRU 3 E BRU 3 1_555 C P DC 4 E DC 4 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.595 ? covale ? covale4 C O3' BRU 3 E BRU 3 1_555 C P DC 4 E DC 4 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.605 ? covale ? covale5 D O3' DU 2 P DU 3 1_555 D P BRU 3 P BRU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? covale ? covale6 D O3' BRU 3 P BRU 4 1_555 D P DC 4 P DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 558 n n S O2 SO4 doub 559 n n S O3 SO4 sing 560 n n S O4 SO4 sing 561 n n # _atom_sites.entry_id 3VAH _atom_sites.fract_transf_matrix[1][1] 0.006015 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004308 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026807 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 DIO A 1 401 8 DIO DIO . F 4 SO4 A 1 402 5 SO4 SO4 . G 4 SO4 A 1 403 10 SO4 SO4 . H 3 DIO B 1 401 1 DIO DIO . I 3 DIO B 1 402 4 DIO DIO . J 3 DIO B 1 403 7 DIO DIO . K 5 CPQ B 1 404 101 CPQ CPQ . L 4 SO4 B 1 405 1 SO4 SO4 . M 4 SO4 B 1 406 6 SO4 SO4 . N 4 SO4 B 1 407 9 SO4 SO4 . O 6 GOL B 1 408 2 GOL GOL . P 7 HOH A 1 501 1 HOH HOH . P 7 HOH A 2 502 3 HOH HOH . P 7 HOH A 3 503 6 HOH HOH . P 7 HOH A 4 504 10 HOH HOH . P 7 HOH A 5 505 11 HOH HOH . P 7 HOH A 6 506 12 HOH HOH . P 7 HOH A 7 507 13 HOH HOH . P 7 HOH A 8 508 15 HOH HOH . P 7 HOH A 9 509 17 HOH HOH . P 7 HOH A 10 510 18 HOH HOH . P 7 HOH A 11 511 20 HOH HOH . P 7 HOH A 12 512 22 HOH HOH . P 7 HOH A 13 513 24 HOH HOH . P 7 HOH A 14 514 28 HOH HOH . P 7 HOH A 15 515 33 HOH HOH . P 7 HOH A 16 516 35 HOH HOH . P 7 HOH A 17 517 36 HOH HOH . P 7 HOH A 18 518 39 HOH HOH . P 7 HOH A 19 519 40 HOH HOH . P 7 HOH A 20 520 41 HOH HOH . P 7 HOH A 21 521 43 HOH HOH . P 7 HOH A 22 522 44 HOH HOH . P 7 HOH A 23 523 46 HOH HOH . P 7 HOH A 24 524 48 HOH HOH . P 7 HOH A 25 525 52 HOH HOH . P 7 HOH A 26 526 53 HOH HOH . P 7 HOH A 27 527 54 HOH HOH . P 7 HOH A 28 528 55 HOH HOH . P 7 HOH A 29 529 60 HOH HOH . P 7 HOH A 30 530 61 HOH HOH . P 7 HOH A 31 531 64 HOH HOH . P 7 HOH A 32 532 65 HOH HOH . P 7 HOH A 33 533 68 HOH HOH . P 7 HOH A 34 534 69 HOH HOH . P 7 HOH A 35 535 71 HOH HOH . P 7 HOH A 36 536 72 HOH HOH . P 7 HOH A 37 537 74 HOH HOH . P 7 HOH A 38 538 75 HOH HOH . P 7 HOH A 39 539 76 HOH HOH . P 7 HOH A 40 540 78 HOH HOH . P 7 HOH A 41 541 79 HOH HOH . P 7 HOH A 42 542 80 HOH HOH . P 7 HOH A 43 543 81 HOH HOH . P 7 HOH A 44 544 82 HOH HOH . P 7 HOH A 45 545 85 HOH HOH . P 7 HOH A 46 546 93 HOH HOH . P 7 HOH A 47 547 94 HOH HOH . P 7 HOH A 48 548 95 HOH HOH . Q 7 HOH B 1 501 2 HOH HOH . Q 7 HOH B 2 502 4 HOH HOH . Q 7 HOH B 3 503 5 HOH HOH . Q 7 HOH B 4 504 7 HOH HOH . Q 7 HOH B 5 505 8 HOH HOH . Q 7 HOH B 6 506 9 HOH HOH . Q 7 HOH B 7 507 14 HOH HOH . Q 7 HOH B 8 508 16 HOH HOH . Q 7 HOH B 9 509 19 HOH HOH . Q 7 HOH B 10 510 21 HOH HOH . Q 7 HOH B 11 511 23 HOH HOH . Q 7 HOH B 12 512 27 HOH HOH . Q 7 HOH B 13 513 29 HOH HOH . Q 7 HOH B 14 514 30 HOH HOH . Q 7 HOH B 15 515 32 HOH HOH . Q 7 HOH B 16 516 38 HOH HOH . Q 7 HOH B 17 517 42 HOH HOH . Q 7 HOH B 18 518 45 HOH HOH . Q 7 HOH B 19 519 47 HOH HOH . Q 7 HOH B 20 520 49 HOH HOH . Q 7 HOH B 21 521 51 HOH HOH . Q 7 HOH B 22 522 56 HOH HOH . Q 7 HOH B 23 523 57 HOH HOH . Q 7 HOH B 24 524 58 HOH HOH . Q 7 HOH B 25 525 59 HOH HOH . Q 7 HOH B 26 526 62 HOH HOH . Q 7 HOH B 27 527 63 HOH HOH . Q 7 HOH B 28 528 66 HOH HOH . Q 7 HOH B 29 529 67 HOH HOH . Q 7 HOH B 30 530 70 HOH HOH . Q 7 HOH B 31 531 83 HOH HOH . Q 7 HOH B 32 532 86 HOH HOH . Q 7 HOH B 33 533 89 HOH HOH . Q 7 HOH B 34 534 90 HOH HOH . Q 7 HOH B 35 535 91 HOH HOH . Q 7 HOH B 36 536 92 HOH HOH . R 7 HOH E 1 101 25 HOH HOH . R 7 HOH E 2 102 31 HOH HOH . R 7 HOH E 3 103 77 HOH HOH . S 7 HOH P 1 101 26 HOH HOH . S 7 HOH P 2 102 34 HOH HOH . S 7 HOH P 3 103 37 HOH HOH . S 7 HOH P 4 104 50 HOH HOH . S 7 HOH P 5 105 73 HOH HOH . S 7 HOH P 6 106 84 HOH HOH . S 7 HOH P 7 107 87 HOH HOH . S 7 HOH P 8 108 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . L 4 10.064 -26.792 27.31 1 56.17 ? S SO4 405 B 1 HETATM 2 O O1 SO4 . . . L 4 11.089 -26.311 26.386 1 55.77 ? O1 SO4 405 B 1 HETATM 3 O O2 SO4 . . . L 4 8.786 -26.143 26.97 1 55.67 ? O2 SO4 405 B 1 HETATM 4 O O3 SO4 . . . L 4 9.973 -28.259 27.139 1 56.12 ? O3 SO4 405 B 1 HETATM 5 O O4 SO4 . . . L 4 10.417 -26.462 28.705 1 54.32 ? O4 SO4 405 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 5 #