data_3VAL # _model_server_result.job_id n0vmMzV0M5d1WlLTImoFhA _model_server_result.datetime_utc '2024-12-23 09:48:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3val # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":401}' # _entry.id 3VAL # _exptl.entry_id 3VAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.105 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIETHYLENE DIOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.97 _cell.angle_gamma 90 _cell.entry_id 3VAL _cell.length_a 37.583 _cell.length_b 137.081 _cell.length_c 83.962 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 L N N ? 3 O N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E O3' DU 4 E DU 4 1_555 E P BRU 5 E BRU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? covale ? covale2 E O3' BRU 5 E BRU 5 1_555 E P DU 6 E DU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? covale ? covale3 F O3' DU 4 H DU 4 1_555 F P BRU 5 H BRU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.596 ? covale ? covale4 F O3' BRU 5 H BRU 5 1_555 F P DU 6 H DU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? covale ? covale5 G O3' DU 4 K DU 4 1_555 G P BRU 5 K BRU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? covale ? covale6 G O3' BRU 5 K BRU 5 1_555 G P DU 6 K DU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? covale ? covale7 H O3' DU 4 P DU 4 1_555 H P BRU 5 P BRU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? covale ? covale8 H O3' BRU 5 P BRU 5 1_555 H P DU 6 P DU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? # _chem_comp.formula 'C4 H8 O2' _chem_comp.formula_weight 88.105 _chem_comp.id DIO _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIETHYLENE DIOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C1' DIO sing 152 n n C1 O1 DIO sing 153 n n C1 H11 DIO sing 154 n n C1 H12 DIO sing 155 n n C2 C2' DIO sing 156 n n C2 O1 DIO sing 157 n n C2 H21 DIO sing 158 n n C2 H22 DIO sing 159 n n C1' O1' DIO sing 160 n n C1' "H1'1" DIO sing 161 n n C1' "H1'2" DIO sing 162 n n C2' O1' DIO sing 163 n n C2' "H2'1" DIO sing 164 n n C2' "H2'2" DIO sing 165 n n # _atom_sites.entry_id 3VAL _atom_sites.fract_transf_matrix[1][1] 0.026608 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006128 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007295 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 DIO A 1 401 3 DIO DOX . J 4 SO4 A 1 402 1 SO4 SO4 . K 4 SO4 A 1 403 5 SO4 SO4 . L 3 DIO B 1 401 1 DIO DOX . M 4 SO4 B 1 402 3 SO4 SO4 . N 4 SO4 B 1 403 6 SO4 SO4 . O 3 DIO D 1 401 4 DIO DOX . P 4 SO4 D 1 402 4 SO4 SO4 . Q 4 SO4 D 1 403 12 SO4 SO4 . R 4 SO4 D 1 404 13 SO4 SO4 . S 3 DIO I 1 401 5 DIO DOX . T 4 SO4 I 1 402 8 SO4 SO4 . U 4 SO4 I 1 403 9 SO4 SO4 . V 4 SO4 I 1 404 15 SO4 SO4 . W 4 SO4 H 1 101 14 SO4 SO4 . X 5 HOH A 1 501 57 HOH HOH . X 5 HOH A 2 502 59 HOH HOH . X 5 HOH A 3 503 60 HOH HOH . X 5 HOH A 4 504 61 HOH HOH . X 5 HOH A 5 505 62 HOH HOH . X 5 HOH A 6 506 63 HOH HOH . X 5 HOH A 7 507 67 HOH HOH . X 5 HOH A 8 508 70 HOH HOH . X 5 HOH A 9 509 71 HOH HOH . X 5 HOH A 10 510 73 HOH HOH . X 5 HOH A 11 511 74 HOH HOH . X 5 HOH A 12 512 76 HOH HOH . X 5 HOH A 13 513 79 HOH HOH . X 5 HOH A 14 514 84 HOH HOH . X 5 HOH A 15 515 85 HOH HOH . X 5 HOH A 16 516 86 HOH HOH . X 5 HOH A 17 517 91 HOH HOH . X 5 HOH A 18 518 96 HOH HOH . X 5 HOH A 19 519 100 HOH HOH . X 5 HOH A 20 520 101 HOH HOH . X 5 HOH A 21 521 103 HOH HOH . X 5 HOH A 22 522 104 HOH HOH . X 5 HOH A 23 523 106 HOH HOH . X 5 HOH A 24 524 109 HOH HOH . X 5 HOH A 25 525 113 HOH HOH . X 5 HOH A 26 526 115 HOH HOH . X 5 HOH A 27 527 118 HOH HOH . X 5 HOH A 28 528 120 HOH HOH . X 5 HOH A 29 529 122 HOH HOH . X 5 HOH A 30 530 123 HOH HOH . X 5 HOH A 31 531 124 HOH HOH . X 5 HOH A 32 532 125 HOH HOH . X 5 HOH A 33 533 126 HOH HOH . X 5 HOH A 34 534 129 HOH HOH . X 5 HOH A 35 535 130 HOH HOH . X 5 HOH A 36 536 132 HOH HOH . X 5 HOH A 37 537 134 HOH HOH . X 5 HOH A 38 538 136 HOH HOH . X 5 HOH A 39 539 137 HOH HOH . X 5 HOH A 40 540 138 HOH HOH . X 5 HOH A 41 541 139 HOH HOH . X 5 HOH A 42 542 141 HOH HOH . X 5 HOH A 43 543 142 HOH HOH . X 5 HOH A 44 544 151 HOH HOH . X 5 HOH A 45 545 152 HOH HOH . X 5 HOH A 46 546 153 HOH HOH . X 5 HOH A 47 547 154 HOH HOH . X 5 HOH A 48 548 157 HOH HOH . X 5 HOH A 49 549 162 HOH HOH . X 5 HOH A 50 550 163 HOH HOH . X 5 HOH A 51 551 172 HOH HOH . X 5 HOH A 52 552 173 HOH HOH . X 5 HOH A 53 553 178 HOH HOH . X 5 HOH A 54 554 189 HOH HOH . X 5 HOH A 55 555 190 HOH HOH . X 5 HOH A 56 556 191 HOH HOH . X 5 HOH A 57 557 192 HOH HOH . X 5 HOH A 58 558 193 HOH HOH . X 5 HOH A 59 559 194 HOH HOH . X 5 HOH A 60 560 196 HOH HOH . X 5 HOH A 61 561 204 HOH HOH . X 5 HOH A 62 562 209 HOH HOH . X 5 HOH A 63 563 211 HOH HOH . X 5 HOH A 64 564 213 HOH HOH . X 5 HOH A 65 565 215 HOH HOH . X 5 HOH A 66 566 216 HOH HOH . X 5 HOH A 67 567 222 HOH HOH . X 5 HOH A 68 568 223 HOH HOH . Y 5 HOH B 1 501 19 HOH HOH . Y 5 HOH B 2 502 20 HOH HOH . Y 5 HOH B 3 503 21 HOH HOH . Y 5 HOH B 4 504 22 HOH HOH . Y 5 HOH B 5 505 23 HOH HOH . Y 5 HOH B 6 506 24 HOH HOH . Y 5 HOH B 7 507 25 HOH HOH . Y 5 HOH B 8 508 26 HOH HOH . Y 5 HOH B 9 509 27 HOH HOH . Y 5 HOH B 10 510 50 HOH HOH . Y 5 HOH B 11 511 58 HOH HOH . Y 5 HOH B 12 512 77 HOH HOH . Y 5 HOH B 13 513 82 HOH HOH . Y 5 HOH B 14 514 92 HOH HOH . Y 5 HOH B 15 515 94 HOH HOH . Y 5 HOH B 16 516 110 HOH HOH . Y 5 HOH B 17 517 121 HOH HOH . Y 5 HOH B 18 518 167 HOH HOH . Y 5 HOH B 19 519 168 HOH HOH . Y 5 HOH B 20 520 169 HOH HOH . Y 5 HOH B 21 521 170 HOH HOH . Y 5 HOH B 22 522 171 HOH HOH . Y 5 HOH B 23 523 175 HOH HOH . Y 5 HOH B 24 524 176 HOH HOH . Y 5 HOH B 25 525 177 HOH HOH . Y 5 HOH B 26 526 205 HOH HOH . Y 5 HOH B 27 527 208 HOH HOH . Y 5 HOH B 28 528 214 HOH HOH . Y 5 HOH B 29 529 224 HOH HOH . Z 5 HOH D 1 501 1 HOH HOH . Z 5 HOH D 2 502 2 HOH HOH . Z 5 HOH D 3 503 3 HOH HOH . Z 5 HOH D 4 504 4 HOH HOH . Z 5 HOH D 5 505 5 HOH HOH . Z 5 HOH D 6 506 6 HOH HOH . Z 5 HOH D 7 507 7 HOH HOH . Z 5 HOH D 8 508 8 HOH HOH . Z 5 HOH D 9 509 9 HOH HOH . Z 5 HOH D 10 510 10 HOH HOH . Z 5 HOH D 11 511 11 HOH HOH . Z 5 HOH D 12 512 12 HOH HOH . Z 5 HOH D 13 513 13 HOH HOH . Z 5 HOH D 14 514 14 HOH HOH . Z 5 HOH D 15 515 15 HOH HOH . Z 5 HOH D 16 516 16 HOH HOH . Z 5 HOH D 17 517 17 HOH HOH . Z 5 HOH D 18 518 18 HOH HOH . Z 5 HOH D 19 519 49 HOH HOH . Z 5 HOH D 20 520 51 HOH HOH . Z 5 HOH D 21 521 52 HOH HOH . Z 5 HOH D 22 522 65 HOH HOH . Z 5 HOH D 23 523 81 HOH HOH . Z 5 HOH D 24 524 87 HOH HOH . Z 5 HOH D 25 525 88 HOH HOH . Z 5 HOH D 26 526 93 HOH HOH . Z 5 HOH D 27 527 102 HOH HOH . Z 5 HOH D 28 528 107 HOH HOH . Z 5 HOH D 29 529 111 HOH HOH . Z 5 HOH D 30 530 112 HOH HOH . Z 5 HOH D 31 531 119 HOH HOH . Z 5 HOH D 32 532 131 HOH HOH . Z 5 HOH D 33 533 135 HOH HOH . Z 5 HOH D 34 534 150 HOH HOH . Z 5 HOH D 35 535 155 HOH HOH . Z 5 HOH D 36 536 156 HOH HOH . Z 5 HOH D 37 537 181 HOH HOH . Z 5 HOH D 38 538 200 HOH HOH . Z 5 HOH D 39 539 201 HOH HOH . Z 5 HOH D 40 540 202 HOH HOH . Z 5 HOH D 41 541 203 HOH HOH . Z 5 HOH D 42 542 206 HOH HOH . Z 5 HOH D 43 543 210 HOH HOH . Z 5 HOH D 44 544 217 HOH HOH . Z 5 HOH D 45 545 218 HOH HOH . Z 5 HOH D 46 546 219 HOH HOH . Z 5 HOH D 47 547 220 HOH HOH . Z 5 HOH D 48 548 221 HOH HOH . Z 5 HOH D 49 549 225 HOH HOH . AA 5 HOH I 1 501 28 HOH HOH . AA 5 HOH I 2 502 29 HOH HOH . AA 5 HOH I 3 503 31 HOH HOH . AA 5 HOH I 4 504 33 HOH HOH . AA 5 HOH I 5 505 34 HOH HOH . AA 5 HOH I 6 506 35 HOH HOH . AA 5 HOH I 7 507 36 HOH HOH . AA 5 HOH I 8 508 37 HOH HOH . AA 5 HOH I 9 509 38 HOH HOH . AA 5 HOH I 10 510 39 HOH HOH . AA 5 HOH I 11 511 40 HOH HOH . AA 5 HOH I 12 512 42 HOH HOH . AA 5 HOH I 13 513 43 HOH HOH . AA 5 HOH I 14 514 44 HOH HOH . AA 5 HOH I 15 515 45 HOH HOH . AA 5 HOH I 16 516 46 HOH HOH . AA 5 HOH I 17 517 47 HOH HOH . AA 5 HOH I 18 518 56 HOH HOH . AA 5 HOH I 19 519 64 HOH HOH . AA 5 HOH I 20 520 68 HOH HOH . AA 5 HOH I 21 521 69 HOH HOH . AA 5 HOH I 22 522 72 HOH HOH . AA 5 HOH I 23 523 75 HOH HOH . AA 5 HOH I 24 524 83 HOH HOH . AA 5 HOH I 25 525 95 HOH HOH . AA 5 HOH I 26 526 97 HOH HOH . AA 5 HOH I 27 527 98 HOH HOH . AA 5 HOH I 28 528 114 HOH HOH . AA 5 HOH I 29 529 117 HOH HOH . AA 5 HOH I 30 530 133 HOH HOH . AA 5 HOH I 31 531 140 HOH HOH . AA 5 HOH I 32 532 143 HOH HOH . AA 5 HOH I 33 533 144 HOH HOH . AA 5 HOH I 34 534 148 HOH HOH . AA 5 HOH I 35 535 149 HOH HOH . AA 5 HOH I 36 536 160 HOH HOH . AA 5 HOH I 37 537 161 HOH HOH . AA 5 HOH I 38 538 183 HOH HOH . AA 5 HOH I 39 539 184 HOH HOH . AA 5 HOH I 40 540 185 HOH HOH . AA 5 HOH I 41 541 187 HOH HOH . AA 5 HOH I 42 542 188 HOH HOH . AA 5 HOH I 43 543 207 HOH HOH . BA 5 HOH E 1 101 30 HOH HOH . BA 5 HOH E 2 102 32 HOH HOH . BA 5 HOH E 3 103 41 HOH HOH . BA 5 HOH E 4 104 158 HOH HOH . BA 5 HOH E 5 105 159 HOH HOH . BA 5 HOH E 6 106 195 HOH HOH . BA 5 HOH E 7 107 198 HOH HOH . BA 5 HOH E 8 108 199 HOH HOH . CA 5 HOH H 1 201 55 HOH HOH . CA 5 HOH H 2 202 78 HOH HOH . CA 5 HOH H 3 203 89 HOH HOH . CA 5 HOH H 4 204 99 HOH HOH . CA 5 HOH H 5 205 105 HOH HOH . CA 5 HOH H 6 206 108 HOH HOH . CA 5 HOH H 7 207 147 HOH HOH . CA 5 HOH H 8 208 164 HOH HOH . CA 5 HOH H 9 209 165 HOH HOH . CA 5 HOH H 10 210 166 HOH HOH . CA 5 HOH H 11 211 174 HOH HOH . CA 5 HOH H 12 212 212 HOH HOH . DA 5 HOH K 1 101 48 HOH HOH . DA 5 HOH K 2 102 53 HOH HOH . DA 5 HOH K 3 103 54 HOH HOH . DA 5 HOH K 4 104 80 HOH HOH . DA 5 HOH K 5 105 128 HOH HOH . DA 5 HOH K 6 106 146 HOH HOH . DA 5 HOH K 7 107 179 HOH HOH . DA 5 HOH K 8 108 180 HOH HOH . DA 5 HOH K 9 109 182 HOH HOH . DA 5 HOH K 10 110 186 HOH HOH . EA 5 HOH P 1 101 66 HOH HOH . EA 5 HOH P 2 102 90 HOH HOH . EA 5 HOH P 3 103 116 HOH HOH . EA 5 HOH P 4 104 127 HOH HOH . EA 5 HOH P 5 105 145 HOH HOH . EA 5 HOH P 6 106 197 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DIO . . . S 3 5.656 26.879 -47.499 1 67.6 ? C1 DIO 401 I 1 HETATM 2 C C2 DIO . . . S 3 6.082 25.513 -49.549 1 66.04 ? C2 DIO 401 I 1 HETATM 3 C C1' DIO . . . S 3 4.368 26.083 -47.229 1 68.41 ? C1' DIO 401 I 1 HETATM 4 C C2' DIO . . . S 3 4.792 24.719 -49.278 1 66.74 ? C2' DIO 401 I 1 HETATM 5 O O1 DIO . . . S 3 6.038 26.78 -48.878 1 65.17 ? O1 DIO 401 I 1 HETATM 6 O O1' DIO . . . S 3 3.9 25.475 -48.444 1 66.87 ? O1' DIO 401 I 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 425 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #