data_3VAP # _model_server_result.job_id qzm-NP5daCuyiAX3cW9xHA _model_server_result.datetime_utc '2025-04-17 06:21:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3VAP # _exptl.entry_id 3VAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 563.673 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(1-{2-[(3-fluoropyridinium-4-yl)amino]-2-oxoethyl}-1H-pyrazol-4-yl)-6-methyl-8-[(3-{[(1R,3R)-3-methylpiperidinium-1-yl]methyl}-1,2-thiazol-5-yl)amino]imidazo[1,2-a]pyrazin-1-ium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3VAP _cell.length_a 83.329 _cell.length_b 83.329 _cell.length_c 157.7 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H32 F N10 O S 3' _chem_comp.formula_weight 563.673 _chem_comp.id 0FY _chem_comp.mon_nstd_flag . _chem_comp.name 3-(1-{2-[(3-fluoropyridinium-4-yl)amino]-2-oxoethyl}-1H-pyrazol-4-yl)-6-methyl-8-[(3-{[(1R,3R)-3-methylpiperidinium-1-yl]methyl}-1,2-thiazol-5-yl)amino]imidazo[1,2-a]pyrazin-1-ium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C40 C23 0FY sing 1 n n C23 C22 0FY sing 2 n n C23 C24 0FY sing 3 n n C22 C21 0FY sing 4 n n C21 C20 0FY sing 5 n n C24 N19 0FY sing 6 n n N19 C20 0FY sing 7 n n N19 C18 0FY sing 8 n n N16 S17 0FY sing 9 n y N16 C15 0FY doub 10 n y S17 C13 0FY sing 11 n y C11 C1 0FY sing 12 n n C18 C15 0FY sing 13 n n C15 C14 0FY sing 14 n y C1 N2 0FY sing 15 n y C1 C6 0FY doub 16 n y N2 C3 0FY doub 17 n y N36 C35 0FY doub 18 n y N36 C37 0FY sing 19 n y C13 C14 0FY doub 20 n y C13 N12 0FY sing 21 n n C35 C34 0FY sing 22 n y C37 C38 0FY doub 23 n y C34 C33 0FY doub 24 n y C6 N5 0FY sing 25 n y C3 N12 0FY sing 26 n n C3 C4 0FY sing 27 n y C38 C33 0FY sing 28 n y C38 F39 0FY sing 29 n n C33 N32 0FY sing 30 n n N32 C30 0FY sing 31 n n O31 C30 0FY doub 32 n n N5 C4 0FY sing 33 n y N5 C9 0FY sing 34 n y C4 N7 0FY doub 35 n y C30 C29 0FY sing 36 n n C25 N26 0FY sing 37 n y C25 C10 0FY doub 38 n y C29 N26 0FY sing 39 n n C9 C10 0FY sing 40 n n C9 C8 0FY doub 41 n y N7 C8 0FY sing 42 n y N26 N27 0FY sing 43 n y C10 C28 0FY sing 44 n y N27 C28 0FY doub 45 n y C34 H34 0FY sing 46 n n C14 H14 0FY sing 47 n n C28 H28 0FY sing 48 n n C25 H25 0FY sing 49 n n C35 H35 0FY sing 50 n n C37 H37 0FY sing 51 n n C8 H8 0FY sing 52 n n C6 H6 0FY sing 53 n n C21 H211 0FY sing 54 n n C21 H212 0FY sing 55 n n C22 H222 0FY sing 56 n n C22 H221 0FY sing 57 n n C20 H201 0FY sing 58 n n C20 H202 0FY sing 59 n n C24 H242 0FY sing 60 n n C24 H241 0FY sing 61 n n C23 H23 0FY sing 62 n n C11 H111 0FY sing 63 n n C11 H113 0FY sing 64 n n C11 H112 0FY sing 65 n n C40 H402 0FY sing 66 n n C40 H403 0FY sing 67 n n C40 H401 0FY sing 68 n n C18 H181 0FY sing 69 n n C18 H182 0FY sing 70 n n C29 H292 0FY sing 71 n n C29 H291 0FY sing 72 n n N32 H32 0FY sing 73 n n N12 H12 0FY sing 74 n n N36 H36 0FY sing 75 n n N7 H7 0FY sing 76 n n N19 H19 0FY sing 77 n n # _atom_sites.entry_id 3VAP _atom_sites.fract_transf_matrix[1][1] 0.012001 _atom_sites.fract_transf_matrix[1][2] 0.006929 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006341 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 0FY _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 0FY _pdbx_nonpoly_scheme.auth_mon_id 0FY _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C34 0FY . . . B 2 9.765 24.462 5.584 1 74.99 ? C34 0FY 1 A 1 HETATM 2 C C14 0FY . . . B 2 2.394 35.826 4.961 1 68.99 ? C14 0FY 1 A 1 HETATM 3 C C28 0FY . . . B 2 7.338 29.123 9.382 1 83.85 ? C28 0FY 1 A 1 HETATM 4 C C25 0FY . . . B 2 8.559 29.972 7.737 1 83.28 ? C25 0FY 1 A 1 HETATM 5 C C35 0FY . . . B 2 9.805 23.189 4.992 1 74.66 ? C35 0FY 1 A 1 HETATM 6 C C37 0FY . . . B 2 12.197 23.159 5.171 1 70.11 ? C37 0FY 1 A 1 HETATM 7 C C8 0FY . . . B 2 5.756 32.032 8.978 1 69.32 ? C8 0FY 1 A 1 HETATM 8 C C10 0FY . . . B 2 7.368 30.121 8.441 1 81.79 ? C10 0FY 1 A 1 HETATM 9 C C33 0FY . . . B 2 10.996 25.089 5.984 1 73.85 ? C33 0FY 1 A 1 HETATM 10 C C38 0FY . . . B 2 12.244 24.379 5.752 1 74.21 ? C38 0FY 1 A 1 HETATM 11 C C9 0FY . . . B 2 6.408 31.167 8.141 1 75.35 ? C9 0FY 1 A 1 HETATM 12 C C15 0FY . . . B 2 1.928 36.166 3.652 1 68.47 ? C15 0FY 1 A 1 HETATM 13 C C13 0FY . . . B 2 3.203 34.73 4.833 1 68.35 ? C13 0FY 1 A 1 HETATM 14 C C4 0FY . . . B 2 5.168 32.523 6.914 1 71.21 ? C4 0FY 1 A 1 HETATM 15 C C6 0FY . . . B 2 6.265 30.828 5.59 1 73.63 ? C6 0FY 1 A 1 HETATM 16 C C3 0FY . . . B 2 4.674 33.093 5.714 1 69.26 ? C3 0FY 1 A 1 HETATM 17 C C1 0FY . . . B 2 5.72 31.393 4.494 1 73.29 ? C1 0FY 1 A 1 HETATM 18 C C30 0FY . . . B 2 9.973 27.162 6.933 1 76.22 ? C30 0FY 1 A 1 HETATM 19 C C21 0FY . . . B 2 3.233 39.603 1.167 1 75.62 ? C21 0FY 1 A 1 HETATM 20 C C22 0FY . . . B 2 2.135 39.981 0.135 1 76.27 ? C22 0FY 1 A 1 HETATM 21 C C20 0FY . . . B 2 2.617 39.078 2.484 1 74.62 ? C20 0FY 1 A 1 HETATM 22 C C24 0FY . . . B 2 0.464 38.66 1.387 1 77.03 ? C24 0FY 1 A 1 HETATM 23 C C23 0FY . . . B 2 0.972 38.943 -0.022 1 75.78 ? C23 0FY 1 A 1 HETATM 24 C C11 0FY . . . B 2 6.099 30.929 3.129 1 74.21 ? C11 0FY 1 A 1 HETATM 25 C C40 0FY . . . B 2 1.18 37.604 -0.79 1 73.22 ? C40 0FY 1 A 1 HETATM 26 C C18 0FY . . . B 2 1.078 37.324 3.397 1 69.54 ? C18 0FY 1 A 1 HETATM 27 C C29 0FY . . . B 2 10.367 28.309 7.839 1 81.13 ? C29 0FY 1 A 1 HETATM 28 N N27 0FY . . . B 2 8.429 28.349 9.264 1 84.22 ? N27 0FY 1 A 1 HETATM 29 N N16 0FY . . . B 2 2.352 35.442 2.599 1 66.99 ? N16 0FY 1 A 1 HETATM 30 N N2 0FY . . . B 2 4.97 32.537 4.54 1 69.54 ? N2 0FY 1 A 1 HETATM 31 N N26 0FY . . . B 2 9.131 28.902 8.281 1 83.29 ? N26 0FY 1 A 1 HETATM 32 N N5 0FY . . . B 2 5.948 31.421 6.841 1 73.82 ? N5 0FY 1 A 1 HETATM 33 N N36 0FY . . . B 2 11 22.633 4.815 1 72.04 ? N36 0FY 1 A 1 HETATM 34 N N7 0FY . . . B 2 5.083 32.869 8.178 1 66.91 ? N7 0FY 1 A 1 HETATM 35 N N32 0FY . . . B 2 11.054 26.384 6.57 1 73.77 ? N32 0FY 1 A 1 HETATM 36 N N12 0FY . . . B 2 3.811 34.178 5.882 1 66.31 ? N12 0FY 1 A 1 HETATM 37 N N19 0FY . . . B 2 1.567 38.058 2.195 1 72.2 ? N19 0FY 1 A 1 HETATM 38 O O31 0FY . . . B 2 8.816 26.991 6.591 1 75.4 ? O31 0FY 1 A 1 HETATM 39 F F39 0FY . . . B 2 13.511 24.808 6.059 1 79.42 ? F39 0FY 1 A 1 HETATM 40 S S17 0FY . . . B 2 3.398 34.275 3.095 1 68.01 ? S17 0FY 1 A 1 HETATM 41 H H34 0FY . . . B 2 8.786 24.914 5.708 1 74.62 ? H34 0FY 1 A 1 HETATM 42 H H14 0FY . . . B 2 2.11 36.287 5.895 1 68.36 ? H14 0FY 1 A 1 HETATM 43 H H28 0FY . . . B 2 6.591 28.911 10.134 1 84.64 ? H28 0FY 1 A 1 HETATM 44 H H25 0FY . . . B 2 8.996 30.47 6.883 1 83.11 ? H25 0FY 1 A 1 HETATM 45 H H35 0FY . . . B 2 8.938 22.614 4.667 1 73.95 ? H35 0FY 1 A 1 HETATM 46 H H37 0FY . . . B 2 13.08 22.573 4.982 1 69.66 ? H37 0FY 1 A 1 HETATM 47 H H8 0FY . . . B 2 5.761 32.242 10.03 1 70.01 ? H8 0FY 1 A 1 HETATM 48 H H6 0FY . . . B 2 6.997 30.054 5.494 1 73.59 ? H6 0FY 1 A 1 HETATM 49 H H211 0FY . . . B 2 3.891 38.831 0.734 1 75.52 ? H211 0FY 1 A 1 HETATM 50 H H212 0FY . . . B 2 3.877 40.472 1.386 1 75.11 ? H212 0FY 1 A 1 HETATM 51 H H222 0FY . . . B 2 2.584 40.222 -0.833 1 76.68 ? H222 0FY 1 A 1 HETATM 52 H H221 0FY . . . B 2 1.678 40.911 0.504 1 76.2 ? H221 0FY 1 A 1 HETATM 53 H H201 0FY . . . B 2 3.361 38.537 3.035 1 75.09 ? H201 0FY 1 A 1 HETATM 54 H H202 0FY . . . B 2 2.174 39.856 3.115 1 74.67 ? H202 0FY 1 A 1 HETATM 55 H H242 0FY . . . B 2 -0.412 37.998 1.341 1 77.96 ? H242 0FY 1 A 1 HETATM 56 H H241 0FY . . . B 2 0.19 39.584 1.898 1 77.4 ? H241 0FY 1 A 1 HETATM 57 H H23 0FY . . . B 2 0.155 39.463 -0.546 1 75.85 ? H23 0FY 1 A 1 HETATM 58 H H111 0FY . . . B 2 5.237 30.919 2.479 1 74.33 ? H111 0FY 1 A 1 HETATM 59 H H113 0FY . . . B 2 6.819 31.631 2.702 1 74.1 ? H113 0FY 1 A 1 HETATM 60 H H112 0FY . . . B 2 6.575 29.941 3.138 1 74.17 ? H112 0FY 1 A 1 HETATM 61 H H402 0FY . . . B 2 1.278 37.813 -1.857 1 73.75 ? H402 0FY 1 A 1 HETATM 62 H H403 0FY . . . B 2 0.334 36.928 -0.66 1 72.61 ? H403 0FY 1 A 1 HETATM 63 H H401 0FY . . . B 2 2.079 37.047 -0.511 1 73.31 ? H401 0FY 1 A 1 HETATM 64 H H181 0FY . . . B 2 0.061 36.956 3.259 1 69.78 ? H181 0FY 1 A 1 HETATM 65 H H182 0FY . . . B 2 1.082 38.048 4.222 1 69.51 ? H182 0FY 1 A 1 HETATM 66 H H292 0FY . . . B 2 10.968 29.035 7.279 1 81.83 ? H292 0FY 1 A 1 HETATM 67 H H291 0FY . . . B 2 10.899 27.975 8.721 1 81.31 ? H291 0FY 1 A 1 HETATM 68 H H32 0FY . . . B 2 11.98 26.727 6.767 1 73.28 ? H32 0FY 1 A 1 HETATM 69 H H12 0FY . . . B 2 3.583 34.557 6.787 1 65.04 ? H12 0FY 1 A 1 HETATM 70 H H36 0FY . . . B 2 11.012 21.735 4.476 1 71.95 ? H36 0FY 1 A 1 HETATM 71 H H7 0FY . . . B 2 4.493 33.556 8.442 1 66.51 ? H7 0FY 1 A 1 HETATM 72 H H19 0FY . . . B 2 2.051 37.345 1.657 1 71.58 ? H19 0FY 1 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 72 #