data_3VAQ
#
_model_server_result.job_id            ArizupHqw4-ulu5QqRrA4A 
_model_server_result.datetime_utc      '2024-11-22 01:21:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vaq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    3VAQ 
#
_exptl.entry_id    3VAQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              267.241 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3VAQ 
_cell.length_a            59.1 
_cell.length_b            180.31 
_cell.length_c            79.43 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VAQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C10 H13 N5 O4' 
_chem_comp.formula_weight    267.241 
_chem_comp.id                ADN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' ADN sing 1 n n 
O5' HO5' ADN sing 2 n n 
C5' C4' ADN sing 3 n n 
C5' "H5'1" ADN sing 4 n n 
C5' "H5'2" ADN sing 5 n n 
C4' O4' ADN sing 6 n n 
C4' C3' ADN sing 7 n n 
C4' H4' ADN sing 8 n n 
O4' C1' ADN sing 9 n n 
C3' O3' ADN sing 10 n n 
C3' C2' ADN sing 11 n n 
C3' H3' ADN sing 12 n n 
O3' HO3' ADN sing 13 n n 
C2' O2' ADN sing 14 n n 
C2' C1' ADN sing 15 n n 
C2' H2' ADN sing 16 n n 
O2' HO2' ADN sing 17 n n 
C1' N9 ADN sing 18 n n 
C1' H1' ADN sing 19 n n 
N9 C8 ADN sing 20 n y 
N9 C4 ADN sing 21 n y 
C8 N7 ADN doub 22 n y 
C8 H8 ADN sing 23 n n 
N7 C5 ADN sing 24 n y 
C5 C6 ADN sing 25 n y 
C5 C4 ADN doub 26 n y 
C6 N6 ADN sing 27 n n 
C6 N1 ADN doub 28 n y 
N6 HN61 ADN sing 29 n n 
N6 HN62 ADN sing 30 n n 
N1 C2 ADN sing 31 n y 
C2 N3 ADN doub 32 n y 
C2 H2 ADN sing 33 n n 
N3 C4 ADN sing 34 n y 
#
_atom_sites.entry_id                     3VAQ 
_atom_sites.fract_transf_matrix[1][1]    0.01692 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005546 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01259 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADN A 1 401 401 ADN ADN . 
D 3 CL A 1 402 402 CL CL . 
E 2 ADN B 1 401 401 ADN ADN . 
F 3 CL B 1 402 402 CL CL . 
G 4 HOH A 1 501 501 HOH HOH . 
G 4 HOH A 2 502 502 HOH HOH . 
G 4 HOH A 3 503 503 HOH HOH . 
G 4 HOH A 4 504 504 HOH HOH . 
G 4 HOH A 5 505 505 HOH HOH . 
G 4 HOH A 6 506 506 HOH HOH . 
G 4 HOH A 7 507 507 HOH HOH . 
G 4 HOH A 8 508 508 HOH HOH . 
G 4 HOH A 9 509 509 HOH HOH . 
G 4 HOH A 10 510 510 HOH HOH . 
G 4 HOH A 11 511 511 HOH HOH . 
G 4 HOH A 12 512 512 HOH HOH . 
G 4 HOH A 13 513 513 HOH HOH . 
G 4 HOH A 14 514 514 HOH HOH . 
G 4 HOH A 15 515 515 HOH HOH . 
G 4 HOH A 16 516 516 HOH HOH . 
G 4 HOH A 17 517 517 HOH HOH . 
G 4 HOH A 18 518 518 HOH HOH . 
G 4 HOH A 19 519 519 HOH HOH . 
G 4 HOH A 20 520 520 HOH HOH . 
G 4 HOH A 21 521 521 HOH HOH . 
G 4 HOH A 22 522 522 HOH HOH . 
G 4 HOH A 23 523 523 HOH HOH . 
G 4 HOH A 24 524 524 HOH HOH . 
G 4 HOH A 25 525 525 HOH HOH . 
G 4 HOH A 26 526 526 HOH HOH . 
G 4 HOH A 27 527 527 HOH HOH . 
G 4 HOH A 28 528 528 HOH HOH . 
G 4 HOH A 29 529 529 HOH HOH . 
G 4 HOH A 30 530 530 HOH HOH . 
G 4 HOH A 31 531 531 HOH HOH . 
G 4 HOH A 32 532 532 HOH HOH . 
G 4 HOH A 33 533 533 HOH HOH . 
G 4 HOH A 34 534 534 HOH HOH . 
G 4 HOH A 35 535 535 HOH HOH . 
G 4 HOH A 36 536 536 HOH HOH . 
G 4 HOH A 37 537 537 HOH HOH . 
G 4 HOH A 38 538 538 HOH HOH . 
G 4 HOH A 39 539 539 HOH HOH . 
G 4 HOH A 40 540 540 HOH HOH . 
G 4 HOH A 41 541 541 HOH HOH . 
G 4 HOH A 42 542 542 HOH HOH . 
G 4 HOH A 43 543 543 HOH HOH . 
G 4 HOH A 44 544 544 HOH HOH . 
G 4 HOH A 45 545 545 HOH HOH . 
G 4 HOH A 46 546 546 HOH HOH . 
G 4 HOH A 47 547 547 HOH HOH . 
G 4 HOH A 48 548 548 HOH HOH . 
G 4 HOH A 49 549 549 HOH HOH . 
G 4 HOH A 50 550 550 HOH HOH . 
G 4 HOH A 51 551 551 HOH HOH . 
G 4 HOH A 52 552 552 HOH HOH . 
G 4 HOH A 53 553 553 HOH HOH . 
G 4 HOH A 54 554 554 HOH HOH . 
G 4 HOH A 55 555 555 HOH HOH . 
G 4 HOH A 56 556 556 HOH HOH . 
G 4 HOH A 57 557 557 HOH HOH . 
G 4 HOH A 58 558 558 HOH HOH . 
G 4 HOH A 59 559 559 HOH HOH . 
G 4 HOH A 60 560 560 HOH HOH . 
G 4 HOH A 61 561 561 HOH HOH . 
G 4 HOH A 62 562 562 HOH HOH . 
G 4 HOH A 63 563 563 HOH HOH . 
G 4 HOH A 64 564 564 HOH HOH . 
G 4 HOH A 65 565 565 HOH HOH . 
G 4 HOH A 66 566 566 HOH HOH . 
G 4 HOH A 67 567 567 HOH HOH . 
G 4 HOH A 68 568 568 HOH HOH . 
G 4 HOH A 69 569 569 HOH HOH . 
G 4 HOH A 70 570 570 HOH HOH . 
G 4 HOH A 71 571 571 HOH HOH . 
G 4 HOH A 72 572 572 HOH HOH . 
G 4 HOH A 73 573 573 HOH HOH . 
G 4 HOH A 74 574 574 HOH HOH . 
G 4 HOH A 75 575 575 HOH HOH . 
G 4 HOH A 76 576 576 HOH HOH . 
G 4 HOH A 77 577 577 HOH HOH . 
G 4 HOH A 78 578 578 HOH HOH . 
G 4 HOH A 79 579 579 HOH HOH . 
G 4 HOH A 80 580 580 HOH HOH . 
G 4 HOH A 81 581 581 HOH HOH . 
H 4 HOH B 1 501 501 HOH HOH . 
H 4 HOH B 2 502 502 HOH HOH . 
H 4 HOH B 3 503 503 HOH HOH . 
H 4 HOH B 4 504 504 HOH HOH . 
H 4 HOH B 5 505 505 HOH HOH . 
H 4 HOH B 6 506 506 HOH HOH . 
H 4 HOH B 7 507 507 HOH HOH . 
H 4 HOH B 8 508 508 HOH HOH . 
H 4 HOH B 9 509 509 HOH HOH . 
H 4 HOH B 10 510 510 HOH HOH . 
H 4 HOH B 11 511 511 HOH HOH . 
H 4 HOH B 12 512 512 HOH HOH . 
H 4 HOH B 13 513 513 HOH HOH . 
H 4 HOH B 14 514 514 HOH HOH . 
H 4 HOH B 15 515 515 HOH HOH . 
H 4 HOH B 16 516 516 HOH HOH . 
H 4 HOH B 17 517 517 HOH HOH . 
H 4 HOH B 18 518 518 HOH HOH . 
H 4 HOH B 19 519 519 HOH HOH . 
H 4 HOH B 20 520 520 HOH HOH . 
H 4 HOH B 21 521 521 HOH HOH . 
H 4 HOH B 22 522 522 HOH HOH . 
H 4 HOH B 23 523 523 HOH HOH . 
H 4 HOH B 24 524 524 HOH HOH . 
H 4 HOH B 25 525 525 HOH HOH . 
H 4 HOH B 26 526 526 HOH HOH . 
H 4 HOH B 27 527 527 HOH HOH . 
H 4 HOH B 28 528 528 HOH HOH . 
H 4 HOH B 29 529 529 HOH HOH . 
H 4 HOH B 30 530 530 HOH HOH . 
H 4 HOH B 31 531 531 HOH HOH . 
H 4 HOH B 32 532 532 HOH HOH . 
H 4 HOH B 33 533 533 HOH HOH . 
H 4 HOH B 34 534 534 HOH HOH . 
H 4 HOH B 35 535 535 HOH HOH . 
H 4 HOH B 36 536 536 HOH HOH . 
H 4 HOH B 37 537 537 HOH HOH . 
H 4 HOH B 38 538 538 HOH HOH . 
H 4 HOH B 39 539 539 HOH HOH . 
H 4 HOH B 40 540 540 HOH HOH . 
H 4 HOH B 41 541 541 HOH HOH . 
H 4 HOH B 42 542 542 HOH HOH . 
H 4 HOH B 43 543 543 HOH HOH . 
H 4 HOH B 44 544 544 HOH HOH . 
H 4 HOH B 45 545 545 HOH HOH . 
H 4 HOH B 46 546 546 HOH HOH . 
H 4 HOH B 47 547 547 HOH HOH . 
H 4 HOH B 48 548 548 HOH HOH . 
H 4 HOH B 49 549 549 HOH HOH . 
H 4 HOH B 50 550 550 HOH HOH . 
H 4 HOH B 51 551 551 HOH HOH . 
H 4 HOH B 52 552 552 HOH HOH . 
H 4 HOH B 53 553 553 HOH HOH . 
H 4 HOH B 54 554 554 HOH HOH . 
H 4 HOH B 55 555 555 HOH HOH . 
H 4 HOH B 56 556 556 HOH HOH . 
H 4 HOH B 57 557 557 HOH HOH . 
H 4 HOH B 58 558 558 HOH HOH . 
H 4 HOH B 59 559 559 HOH HOH . 
H 4 HOH B 60 560 560 HOH HOH . 
H 4 HOH B 61 561 561 HOH HOH . 
H 4 HOH B 62 562 562 HOH HOH . 
H 4 HOH B 63 563 563 HOH HOH . 
H 4 HOH B 64 564 564 HOH HOH . 
H 4 HOH B 65 565 565 HOH HOH . 
H 4 HOH B 66 566 566 HOH HOH . 
H 4 HOH B 67 567 567 HOH HOH . 
H 4 HOH B 68 568 568 HOH HOH . 
H 4 HOH B 69 569 569 HOH HOH . 
H 4 HOH B 70 570 570 HOH HOH . 
H 4 HOH B 71 571 571 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' ADN . . . C 2 13.565 -18.069 10.873 1 35.77 ? O5' ADN 401 A 1 
HETATM 2 C C5' ADN . . . C 2 14.644 -17.783 9.988 1 32.8 ? C5' ADN 401 A 1 
HETATM 3 C C4' ADN . . . C 2 14.152 -17.197 8.689 1 34.26 ? C4' ADN 401 A 1 
HETATM 4 O O4' ADN . . . C 2 13.446 -15.974 8.955 1 33.58 ? O4' ADN 401 A 1 
HETATM 5 C C3' ADN . . . C 2 15.238 -16.836 7.672 1 33.96 ? C3' ADN 401 A 1 
HETATM 6 O O3' ADN . . . C 2 15.217 -17.772 6.595 1 32.36 ? O3' ADN 401 A 1 
HETATM 7 C C2' ADN . . . C 2 14.837 -15.437 7.156 1 34.71 ? C2' ADN 401 A 1 
HETATM 8 O O2' ADN . . . C 2 14.791 -15.318 5.75 1 39 ? O2' ADN 401 A 1 
HETATM 9 C C1' ADN . . . C 2 13.462 -15.202 7.788 1 34.3 ? C1' ADN 401 A 1 
HETATM 10 N N9 ADN . . . C 2 13.201 -13.805 8.144 1 32.08 ? N9 ADN 401 A 1 
HETATM 11 C C8 ADN . . . C 2 14.029 -13.017 8.806 1 33.51 ? C8 ADN 401 A 1 
HETATM 12 N N7 ADN . . . C 2 13.397 -11.695 8.932 1 31.24 ? N7 ADN 401 A 1 
HETATM 13 C C5 ADN . . . C 2 12.122 -11.752 8.29 1 31.54 ? C5 ADN 401 A 1 
HETATM 14 C C6 ADN . . . C 2 11.121 -10.791 8.118 1 34.11 ? C6 ADN 401 A 1 
HETATM 15 N N6 ADN . . . C 2 11.299 -9.458 8.638 1 36.12 ? N6 ADN 401 A 1 
HETATM 16 N N1 ADN . . . C 2 9.959 -11.124 7.437 1 33.37 ? N1 ADN 401 A 1 
HETATM 17 C C2 ADN . . . C 2 9.788 -12.391 6.937 1 31.37 ? C2 ADN 401 A 1 
HETATM 18 N N3 ADN . . . C 2 10.767 -13.333 7.106 1 31.94 ? N3 ADN 401 A 1 
HETATM 19 C C4 ADN . . . C 2 11.957 -12.992 7.8 1 30.29 ? C4 ADN 401 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           19 
#