data_3VAU # _model_server_result.job_id cj0rDQeicd0_s7NQhlLAHw _model_server_result.datetime_utc '2025-01-11 12:51:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vau # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 3VAU # _exptl.entry_id 3VAU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 661.485 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "[3,3'-{7-ethenyl-3,8,13,17-tetramethyl-12-[(E)-2-nitroethenyl]porphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~}dipro panoato(2-)]iron" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.5 _cell.angle_gamma 90 _cell.entry_id 3VAU _cell.length_a 35.14 _cell.length_b 28.423 _cell.length_c 62.867 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VAU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 B FE NTE . A NTE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 B FE NTE . A NTE 201 1_555 C O1 NO2 . A NO2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc3 B FE NTE . A NTE 201 1_555 C N NO2 . A NO2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? # _chem_comp.formula 'C34 H31 Fe N5 O6' _chem_comp.formula_weight 661.485 _chem_comp.id NTE _chem_comp.mon_nstd_flag . _chem_comp.name "[3,3'-{7-ethenyl-3,8,13,17-tetramethyl-12-[(E)-2-nitroethenyl]porphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~}dipro panoato(2-)]iron" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Nitriheme # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N FE NTE sing 226 n n N C1C NTE sing 227 n y N C4C NTE sing 228 n y FE NA NTE sing 229 n n FE NB NTE sing 230 n n FE ND NTE sing 231 n n O1 NC NTE sing 232 n n O2 NC NTE doub 233 n n NA C1A NTE sing 234 n y NA C4A NTE sing 235 n y NB C1B NTE sing 236 n n NB C4B NTE doub 237 n n NC CBB NTE sing 238 n n ND C1D NTE doub 239 n n ND C4D NTE sing 240 n n C1A C2A NTE doub 241 n y C1A CHA NTE sing 242 n n O1A CGA NTE sing 243 n n C1B C2B NTE sing 244 n n C1B CHB NTE doub 245 n n C1C C2C NTE sing 246 n y C1C CHC NTE doub 247 n n C1D C2D NTE sing 248 n n C1D CHD NTE sing 249 n n O1D CGD NTE doub 250 n n C2A C3A NTE sing 251 n y C2A CAA NTE sing 252 n n O2A CGA NTE doub 253 n n C2B C3B NTE doub 254 n n C2B CMB NTE sing 255 n n C2C C3C NTE doub 256 n y C2C CMC NTE sing 257 n n C2D C3D NTE doub 258 n n C2D CMD NTE sing 259 n n O2D CGD NTE sing 260 n n C3A C4A NTE doub 261 n y C3A CMA NTE sing 262 n n C3B C4B NTE sing 263 n n C3B CAB NTE sing 264 n n C3C C4C NTE sing 265 n y C3C CAC NTE sing 266 n n C3D C4D NTE sing 267 n n C3D CAD NTE sing 268 n n C4A CHB NTE sing 269 n n C4B CHC NTE sing 270 n n C4C CHD NTE doub 271 n n C4D CHA NTE doub 272 n n CAA CBA NTE sing 273 n n CAB CBB NTE doub 274 e n CAC CBC NTE doub 275 n n CAD CBD NTE sing 276 n n CBA CGA NTE sing 277 n n CBD CGD NTE sing 278 n n O1A H1 NTE sing 279 n n O2D H2 NTE sing 280 n n CAA HAA NTE sing 281 n n CAA HAAA NTE sing 282 n n CAB HAB NTE sing 283 n n CAC HAC NTE sing 284 n n CAD HAD NTE sing 285 n n CAD HADA NTE sing 286 n n CBA HBA NTE sing 287 n n CBA HBAA NTE sing 288 n n CBB HBB NTE sing 289 n n CBC HBC NTE sing 290 n n CBC HBCA NTE sing 291 n n CBD HBD NTE sing 292 n n CBD HBDA NTE sing 293 n n CHA HHA NTE sing 294 n n CHB HHB NTE sing 295 n n CHC HHC NTE sing 296 n n CHD HHD NTE sing 297 n n CMA HMA NTE sing 298 n n CMA HMAA NTE sing 299 n n CMA HMAB NTE sing 300 n n CMB HMB NTE sing 301 n n CMB HMBA NTE sing 302 n n CMB HMBB NTE sing 303 n n CMC HMC NTE sing 304 n n CMC HMCA NTE sing 305 n n CMC HMCB NTE sing 306 n n CMD HMD NTE sing 307 n n CMD HMDA NTE sing 308 n n CMD HMDB NTE sing 309 n n # _atom_sites.entry_id 3VAU _atom_sites.fract_transf_matrix[1][1] 0.028458 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00789 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.035183 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016507 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NTE A 1 201 154 NTE NTE . C 3 NO2 A 1 202 1 NO2 NO2 . D 4 SO4 A 1 203 2 SO4 SO4 . E 5 HOH A 1 301 1 HOH HOH . E 5 HOH A 2 302 2 HOH HOH . E 5 HOH A 3 303 3 HOH HOH . E 5 HOH A 4 304 4 HOH HOH . E 5 HOH A 5 305 5 HOH HOH . E 5 HOH A 6 306 6 HOH HOH . E 5 HOH A 7 307 7 HOH HOH . E 5 HOH A 8 308 8 HOH HOH . E 5 HOH A 9 309 9 HOH HOH . E 5 HOH A 10 310 10 HOH HOH . E 5 HOH A 11 311 11 HOH HOH . E 5 HOH A 12 312 12 HOH HOH . E 5 HOH A 13 313 13 HOH HOH . E 5 HOH A 14 314 14 HOH HOH . E 5 HOH A 15 315 15 HOH HOH . E 5 HOH A 16 316 16 HOH HOH . E 5 HOH A 17 317 17 HOH HOH . E 5 HOH A 18 318 18 HOH HOH . E 5 HOH A 19 319 19 HOH HOH . E 5 HOH A 20 320 20 HOH HOH . E 5 HOH A 21 321 21 HOH HOH . E 5 HOH A 22 322 22 HOH HOH . E 5 HOH A 23 323 23 HOH HOH . E 5 HOH A 24 324 24 HOH HOH . E 5 HOH A 25 325 25 HOH HOH . E 5 HOH A 26 326 26 HOH HOH . E 5 HOH A 27 327 27 HOH HOH . E 5 HOH A 28 328 28 HOH HOH . E 5 HOH A 29 329 29 HOH HOH . E 5 HOH A 30 330 30 HOH HOH . E 5 HOH A 31 331 31 HOH HOH . E 5 HOH A 32 332 32 HOH HOH . E 5 HOH A 33 333 33 HOH HOH . E 5 HOH A 34 334 34 HOH HOH . E 5 HOH A 35 335 35 HOH HOH . E 5 HOH A 36 336 36 HOH HOH . E 5 HOH A 37 337 37 HOH HOH . E 5 HOH A 38 338 38 HOH HOH . E 5 HOH A 39 339 39 HOH HOH . E 5 HOH A 40 340 40 HOH HOH . E 5 HOH A 41 341 41 HOH HOH . E 5 HOH A 42 342 42 HOH HOH . E 5 HOH A 43 343 43 HOH HOH . E 5 HOH A 44 344 44 HOH HOH . E 5 HOH A 45 345 45 HOH HOH . E 5 HOH A 46 346 46 HOH HOH . E 5 HOH A 47 347 47 HOH HOH . E 5 HOH A 48 348 48 HOH HOH . E 5 HOH A 49 349 49 HOH HOH . E 5 HOH A 50 350 50 HOH HOH . E 5 HOH A 51 351 51 HOH HOH . E 5 HOH A 52 352 52 HOH HOH . E 5 HOH A 53 353 53 HOH HOH . E 5 HOH A 54 354 54 HOH HOH . E 5 HOH A 55 355 55 HOH HOH . E 5 HOH A 56 356 56 HOH HOH . E 5 HOH A 57 357 57 HOH HOH . E 5 HOH A 58 358 58 HOH HOH . E 5 HOH A 59 359 59 HOH HOH . E 5 HOH A 60 360 60 HOH HOH . E 5 HOH A 61 361 61 HOH HOH . E 5 HOH A 62 362 62 HOH HOH . E 5 HOH A 63 363 63 HOH HOH . E 5 HOH A 64 364 64 HOH HOH . E 5 HOH A 65 365 65 HOH HOH . E 5 HOH A 66 366 66 HOH HOH . E 5 HOH A 67 367 67 HOH HOH . E 5 HOH A 68 368 68 HOH HOH . E 5 HOH A 69 369 69 HOH HOH . E 5 HOH A 70 370 70 HOH HOH . E 5 HOH A 71 371 71 HOH HOH . E 5 HOH A 72 372 72 HOH HOH . E 5 HOH A 73 373 73 HOH HOH . E 5 HOH A 74 374 74 HOH HOH . E 5 HOH A 75 375 75 HOH HOH . E 5 HOH A 76 376 76 HOH HOH . E 5 HOH A 77 377 77 HOH HOH . E 5 HOH A 78 378 78 HOH HOH . E 5 HOH A 79 379 79 HOH HOH . E 5 HOH A 80 380 80 HOH HOH . E 5 HOH A 81 381 81 HOH HOH . E 5 HOH A 82 382 82 HOH HOH . E 5 HOH A 83 383 83 HOH HOH . E 5 HOH A 84 384 84 HOH HOH . E 5 HOH A 85 385 85 HOH HOH . E 5 HOH A 86 386 86 HOH HOH . E 5 HOH A 87 387 87 HOH HOH . E 5 HOH A 88 388 88 HOH HOH . E 5 HOH A 89 389 89 HOH HOH . E 5 HOH A 90 390 90 HOH HOH . E 5 HOH A 91 391 91 HOH HOH . E 5 HOH A 92 392 92 HOH HOH . E 5 HOH A 93 393 93 HOH HOH . E 5 HOH A 94 394 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NTE . . . B 2 0.835 -0.546 14.284 1 13.5 ? N NTE 201 A 1 HETATM 2 FE FE NTE . . . B 2 -0.567 0.834 14.889 1 16.59 ? FE NTE 201 A 1 HETATM 3 O O1 NTE . . . B 2 -5.237 -6.347 12.443 0.8 21.63 ? O1 NTE 201 A 1 HETATM 4 O O2 NTE . . . B 2 -3.394 -5.887 11.643 0.8 24.43 ? O2 NTE 201 A 1 HETATM 5 N NA NTE . . . B 2 -1.95 2.175 15.545 1 13.01 ? NA NTE 201 A 1 HETATM 6 N NB NTE . . . B 2 -2.062 -0.464 14.414 1 14.03 ? NB NTE 201 A 1 HETATM 7 N NC NTE . . . B 2 -4.31 -5.601 12.425 0.8 23.12 ? NC NTE 201 A 1 HETATM 8 N ND NTE . . . B 2 0.921 2.095 15.368 1 13.69 ? ND NTE 201 A 1 HETATM 9 C C1A NTE . . . B 2 -1.677 3.376 16.043 1 12.89 ? C1A NTE 201 A 1 HETATM 10 O O1A NTE . . . B 2 -1.448 6.775 14.653 1 17.96 ? O1A NTE 201 A 1 HETATM 11 C C1B NTE . . . B 2 -3.365 -0.301 14.574 1 14.04 ? C1B NTE 201 A 1 HETATM 12 C C1C NTE . . . B 2 0.585 -1.795 13.871 1 11.82 ? C1C NTE 201 A 1 HETATM 13 C C1D NTE . . . B 2 2.233 1.897 15.309 1 15.61 ? C1D NTE 201 A 1 HETATM 14 O O1D NTE . . . B 2 1.743 6.827 19.654 1 36.16 ? O1D NTE 201 A 1 HETATM 15 C C2A NTE . . . B 2 -2.9 4.071 16.424 1 12.72 ? C2A NTE 201 A 1 HETATM 16 O O2A NTE . . . B 2 -3.177 6.043 13.428 1 19.37 ? O2A NTE 201 A 1 HETATM 17 C C2B NTE . . . B 2 -4.153 -1.429 14.147 1 14.6 ? C2B NTE 201 A 1 HETATM 18 C C2C NTE . . . B 2 1.817 -2.55 13.628 1 11.23 ? C2C NTE 201 A 1 HETATM 19 C C2D NTE . . . B 2 3.036 3.043 15.809 1 16.03 ? C2D NTE 201 A 1 HETATM 20 O O2D NTE . . . B 2 3.87 6.421 19.493 1 34.62 ? O2D NTE 201 A 1 HETATM 21 C C3A NTE . . . B 2 -3.885 3.19 16.159 1 14.33 ? C3A NTE 201 A 1 HETATM 22 C C3B NTE . . . B 2 -3.226 -2.324 13.681 1 16.5 ? C3B NTE 201 A 1 HETATM 23 C C3C NTE . . . B 2 2.828 -1.686 14.043 1 13.74 ? C3C NTE 201 A 1 HETATM 24 C C3D NTE . . . B 2 2.095 3.96 16.191 1 17.53 ? C3D NTE 201 A 1 HETATM 25 C C4A NTE . . . B 2 -3.236 1.979 15.616 1 12.66 ? C4A NTE 201 A 1 HETATM 26 C C4B NTE . . . B 2 -1.931 -1.657 13.839 1 15.68 ? C4B NTE 201 A 1 HETATM 27 C C4C NTE . . . B 2 2.146 -0.409 14.438 1 13 ? C4C NTE 201 A 1 HETATM 28 C C4D NTE . . . B 2 0.777 3.316 15.938 1 14.08 ? C4D NTE 201 A 1 HETATM 29 C CAA NTE . . . B 2 -2.934 5.495 16.939 1 14.56 ? CAA NTE 201 A 1 HETATM 30 C CAB NTE . . . B 2 -3.381 -3.648 13.043 1 17.96 ? CAB NTE 201 A 1 HETATM 31 C CAC NTE . . . B 2 4.333 -1.802 14.045 1 15.03 ? CAC NTE 201 A 1 HETATM 32 C CAD NTE . . . B 2 2.327 5.313 16.81 1 19.52 ? CAD NTE 201 A 1 HETATM 33 C CBA NTE . . . B 2 -3.506 6.305 15.738 1 15.76 ? CBA NTE 201 A 1 HETATM 34 C CBB NTE . . . B 2 -4.341 -4.539 13.171 1 24.22 ? CBB NTE 201 A 1 HETATM 35 C CBC NTE . . . B 2 4.791 -3.018 14.072 1 15.45 ? CBC NTE 201 A 1 HETATM 36 C CBD NTE . . . B 2 2.501 4.97 18.3 1 22.5 ? CBD NTE 201 A 1 HETATM 37 C CGA NTE . . . B 2 -2.636 6.364 14.515 1 20.26 ? CGA NTE 201 A 1 HETATM 38 C CGD NTE . . . B 2 2.706 6.17 19.198 1 32.75 ? CGD NTE 201 A 1 HETATM 39 C CHA NTE . . . B 2 -0.447 4.043 16.249 1 13.51 ? CHA NTE 201 A 1 HETATM 40 C CHB NTE . . . B 2 -3.996 0.819 15.184 1 13.13 ? CHB NTE 201 A 1 HETATM 41 C CHC NTE . . . B 2 -0.705 -2.332 13.532 1 15.93 ? CHC NTE 201 A 1 HETATM 42 C CHD NTE . . . B 2 2.92 0.733 14.849 1 13.71 ? CHD NTE 201 A 1 HETATM 43 C CMA NTE . . . B 2 -5.381 3.39 16.32 1 11.76 ? CMA NTE 201 A 1 HETATM 44 C CMB NTE . . . B 2 -5.688 -1.521 14.195 1 15.87 ? CMB NTE 201 A 1 HETATM 45 C CMC NTE . . . B 2 1.816 -3.963 13.13 1 13.42 ? CMC NTE 201 A 1 HETATM 46 C CMD NTE . . . B 2 4.534 3.208 15.843 1 19.05 ? CMD NTE 201 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 46 #