data_3VB1 # _model_server_result.job_id y6u0eVRgCos90FEiNbQbnw _model_server_result.datetime_utc '2024-11-23 10:55:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vb1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":424}' # _entry.id 3VB1 # _exptl.entry_id 3VB1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VB1 _cell.length_a 34.923 _cell.length_b 36.463 _cell.length_c 92.091 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VB1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 17 A CYS 17 1_555 A SG CYS 48 A CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 44 A CYS 44 1_555 A SG CYS 100 A CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 A SG CYS 89 A CYS 89 1_555 A SG CYS 109 A CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? covale ? covale1 A C MET 6 A MET 6 1_555 A N SME 7 A SME 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C SME 7 A SME 7 1_555 A N LYS 8 A LYS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACY doub 1 n n C OXT ACY sing 2 n n C CH3 ACY sing 3 n n OXT HXT ACY sing 4 n n CH3 H1 ACY sing 5 n n CH3 H2 ACY sing 6 n n CH3 H3 ACY sing 7 n n # _atom_sites.entry_id 3VB1 _atom_sites.fract_transf_matrix[1][1] 0.028635 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027425 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010859 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACY A 1 424 424 ACY ACY . C 3 HOH A 1 121 2 HOH HOH . C 3 HOH A 2 122 8 HOH HOH . C 3 HOH A 3 123 12 HOH HOH . C 3 HOH A 4 124 13 HOH HOH . C 3 HOH A 5 125 16 HOH HOH . C 3 HOH A 6 126 18 HOH HOH . C 3 HOH A 7 127 19 HOH HOH . C 3 HOH A 8 128 21 HOH HOH . C 3 HOH A 9 129 22 HOH HOH . C 3 HOH A 10 130 68 HOH HOH . C 3 HOH A 11 131 69 HOH HOH . C 3 HOH A 12 132 71 HOH HOH . C 3 HOH A 13 133 74 HOH HOH . C 3 HOH A 14 134 78 HOH HOH . C 3 HOH A 15 135 79 HOH HOH . C 3 HOH A 16 136 86 HOH HOH . C 3 HOH A 17 137 87 HOH HOH . C 3 HOH A 18 138 107 HOH HOH . C 3 HOH A 19 139 118 HOH HOH . C 3 HOH A 20 140 119 HOH HOH . C 3 HOH A 21 210 210 HOH HOH . C 3 HOH A 22 216 216 HOH HOH . C 3 HOH A 23 220 220 HOH HOH . C 3 HOH A 24 304 304 HOH HOH . C 3 HOH A 25 306 306 HOH HOH . C 3 HOH A 26 316 316 HOH HOH . C 3 HOH A 27 317 317 HOH HOH . C 3 HOH A 28 319 319 HOH HOH . C 3 HOH A 29 322 322 HOH HOH . C 3 HOH A 30 326 326 HOH HOH . C 3 HOH A 31 330 330 HOH HOH . C 3 HOH A 32 331 331 HOH HOH . C 3 HOH A 33 332 332 HOH HOH . C 3 HOH A 34 333 333 HOH HOH . C 3 HOH A 35 334 334 HOH HOH . C 3 HOH A 36 336 336 HOH HOH . C 3 HOH A 37 337 337 HOH HOH . C 3 HOH A 38 338 338 HOH HOH . C 3 HOH A 39 339 339 HOH HOH . C 3 HOH A 40 340 340 HOH HOH . C 3 HOH A 41 341 341 HOH HOH . C 3 HOH A 42 342 342 HOH HOH . C 3 HOH A 43 343 343 HOH HOH . C 3 HOH A 44 344 344 HOH HOH . C 3 HOH A 45 345 345 HOH HOH . C 3 HOH A 46 346 346 HOH HOH . C 3 HOH A 47 347 347 HOH HOH . C 3 HOH A 48 349 349 HOH HOH . C 3 HOH A 49 350 350 HOH HOH . C 3 HOH A 50 351 351 HOH HOH . C 3 HOH A 51 353 353 HOH HOH . C 3 HOH A 52 354 354 HOH HOH . C 3 HOH A 53 355 355 HOH HOH . C 3 HOH A 54 356 356 HOH HOH . C 3 HOH A 55 358 358 HOH HOH . C 3 HOH A 56 359 359 HOH HOH . C 3 HOH A 57 360 360 HOH HOH . C 3 HOH A 58 361 361 HOH HOH . C 3 HOH A 59 362 362 HOH HOH . C 3 HOH A 60 363 363 HOH HOH . C 3 HOH A 61 364 364 HOH HOH . C 3 HOH A 62 365 365 HOH HOH . C 3 HOH A 63 366 366 HOH HOH . C 3 HOH A 64 367 367 HOH HOH . C 3 HOH A 65 368 368 HOH HOH . C 3 HOH A 66 369 369 HOH HOH . C 3 HOH A 67 370 370 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . . . B 2 19.073 13.183 22.342 1 52.33 ? C ACY 424 A 1 HETATM 2 O O ACY . . . B 2 18.875 11.951 22.35 1 51.3 ? O ACY 424 A 1 HETATM 3 O OXT ACY . . . B 2 18.765 13.924 21.382 1 52.64 ? OXT ACY 424 A 1 HETATM 4 C CH3 ACY . . . B 2 19.689 13.824 23.556 1 52.25 ? CH3 ACY 424 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #