data_3VB3
#
_model_server_result.job_id            bDmRT0kLIudMR_DmGpmLeg 
_model_server_result.datetime_utc      '2024-11-14 17:57:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vb3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":404}' 
#
_entry.id    3VB3 
#
_exptl.entry_id    3VB3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.73 
_cell.angle_gamma         90 
_cell.entry_id            3VB3 
_cell.length_a            52.434 
_cell.length_b            96.741 
_cell.length_c            67.719 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VB3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     3VB3 
_atom_sites.fract_transf_matrix[1][1]    0.019071 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004309 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010337 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015139 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PEG A 1 401 1 PEG PEG . 
D 3 EDO A 1 402 2 EDO EDO . 
E 3 EDO A 1 403 3 EDO EDO . 
F 3 EDO A 1 404 5 EDO EDO . 
G 3 EDO A 1 405 7 EDO EDO . 
H 3 EDO A 1 406 8 EDO EDO . 
I 3 EDO B 1 401 4 EDO EDO . 
J 3 EDO B 1 402 6 EDO EDO . 
K 4 HOH A 1 501 4 HOH HOH . 
K 4 HOH A 2 502 7 HOH HOH . 
K 4 HOH A 3 503 8 HOH HOH . 
K 4 HOH A 4 504 10 HOH HOH . 
K 4 HOH A 5 505 12 HOH HOH . 
K 4 HOH A 6 506 15 HOH HOH . 
K 4 HOH A 7 507 17 HOH HOH . 
K 4 HOH A 8 508 18 HOH HOH . 
K 4 HOH A 9 509 24 HOH HOH . 
K 4 HOH A 10 510 26 HOH HOH . 
K 4 HOH A 11 511 27 HOH HOH . 
K 4 HOH A 12 512 28 HOH HOH . 
K 4 HOH A 13 513 29 HOH HOH . 
K 4 HOH A 14 514 36 HOH HOH . 
K 4 HOH A 15 515 40 HOH HOH . 
K 4 HOH A 16 516 43 HOH HOH . 
K 4 HOH A 17 517 52 HOH HOH . 
K 4 HOH A 18 518 55 HOH HOH . 
K 4 HOH A 19 519 58 HOH HOH . 
K 4 HOH A 20 520 62 HOH HOH . 
K 4 HOH A 21 521 68 HOH HOH . 
K 4 HOH A 22 522 70 HOH HOH . 
K 4 HOH A 23 523 71 HOH HOH . 
K 4 HOH A 24 524 76 HOH HOH . 
K 4 HOH A 25 525 78 HOH HOH . 
K 4 HOH A 26 526 90 HOH HOH . 
K 4 HOH A 27 527 91 HOH HOH . 
K 4 HOH A 28 528 99 HOH HOH . 
K 4 HOH A 29 529 106 HOH HOH . 
K 4 HOH A 30 530 116 HOH HOH . 
K 4 HOH A 31 531 121 HOH HOH . 
K 4 HOH A 32 532 134 HOH HOH . 
K 4 HOH A 33 533 135 HOH HOH . 
K 4 HOH A 34 534 136 HOH HOH . 
K 4 HOH A 35 535 144 HOH HOH . 
K 4 HOH A 36 536 145 HOH HOH . 
K 4 HOH A 37 537 148 HOH HOH . 
K 4 HOH A 38 538 149 HOH HOH . 
K 4 HOH A 39 539 150 HOH HOH . 
K 4 HOH A 40 540 159 HOH HOH . 
K 4 HOH A 41 541 161 HOH HOH . 
K 4 HOH A 42 542 166 HOH HOH . 
K 4 HOH A 43 543 167 HOH HOH . 
K 4 HOH A 44 544 170 HOH HOH . 
K 4 HOH A 45 545 172 HOH HOH . 
K 4 HOH A 46 546 175 HOH HOH . 
K 4 HOH A 47 547 179 HOH HOH . 
K 4 HOH A 48 548 180 HOH HOH . 
K 4 HOH A 49 549 182 HOH HOH . 
K 4 HOH A 50 550 185 HOH HOH . 
K 4 HOH A 51 551 187 HOH HOH . 
K 4 HOH A 52 552 189 HOH HOH . 
K 4 HOH A 53 553 190 HOH HOH . 
K 4 HOH A 54 554 191 HOH HOH . 
K 4 HOH A 55 555 192 HOH HOH . 
K 4 HOH A 56 556 193 HOH HOH . 
K 4 HOH A 57 557 194 HOH HOH . 
K 4 HOH A 58 558 197 HOH HOH . 
K 4 HOH A 59 559 198 HOH HOH . 
K 4 HOH A 60 560 203 HOH HOH . 
K 4 HOH A 61 561 207 HOH HOH . 
K 4 HOH A 62 562 209 HOH HOH . 
K 4 HOH A 63 563 213 HOH HOH . 
K 4 HOH A 64 564 229 HOH HOH . 
K 4 HOH A 65 565 230 HOH HOH . 
K 4 HOH A 66 566 231 HOH HOH . 
K 4 HOH A 67 567 232 HOH HOH . 
K 4 HOH A 68 568 233 HOH HOH . 
K 4 HOH A 69 569 234 HOH HOH . 
K 4 HOH A 70 570 240 HOH HOH . 
K 4 HOH A 71 571 249 HOH HOH . 
K 4 HOH A 72 572 253 HOH HOH . 
L 4 HOH B 1 501 2 HOH HOH . 
L 4 HOH B 2 502 5 HOH HOH . 
L 4 HOH B 3 503 14 HOH HOH . 
L 4 HOH B 4 504 16 HOH HOH . 
L 4 HOH B 5 505 20 HOH HOH . 
L 4 HOH B 6 506 22 HOH HOH . 
L 4 HOH B 7 507 25 HOH HOH . 
L 4 HOH B 8 508 30 HOH HOH . 
L 4 HOH B 9 509 31 HOH HOH . 
L 4 HOH B 10 510 33 HOH HOH . 
L 4 HOH B 11 511 35 HOH HOH . 
L 4 HOH B 12 512 37 HOH HOH . 
L 4 HOH B 13 513 39 HOH HOH . 
L 4 HOH B 14 514 41 HOH HOH . 
L 4 HOH B 15 515 44 HOH HOH . 
L 4 HOH B 16 516 46 HOH HOH . 
L 4 HOH B 17 517 47 HOH HOH . 
L 4 HOH B 18 518 50 HOH HOH . 
L 4 HOH B 19 519 54 HOH HOH . 
L 4 HOH B 20 520 57 HOH HOH . 
L 4 HOH B 21 521 61 HOH HOH . 
L 4 HOH B 22 522 63 HOH HOH . 
L 4 HOH B 23 523 64 HOH HOH . 
L 4 HOH B 24 524 67 HOH HOH . 
L 4 HOH B 25 525 69 HOH HOH . 
L 4 HOH B 26 526 72 HOH HOH . 
L 4 HOH B 27 527 73 HOH HOH . 
L 4 HOH B 28 528 75 HOH HOH . 
L 4 HOH B 29 529 81 HOH HOH . 
L 4 HOH B 30 530 86 HOH HOH . 
L 4 HOH B 31 531 95 HOH HOH . 
L 4 HOH B 32 532 96 HOH HOH . 
L 4 HOH B 33 533 98 HOH HOH . 
L 4 HOH B 34 534 101 HOH HOH . 
L 4 HOH B 35 535 102 HOH HOH . 
L 4 HOH B 36 536 103 HOH HOH . 
L 4 HOH B 37 537 104 HOH HOH . 
L 4 HOH B 38 538 107 HOH HOH . 
L 4 HOH B 39 539 108 HOH HOH . 
L 4 HOH B 40 540 111 HOH HOH . 
L 4 HOH B 41 541 113 HOH HOH . 
L 4 HOH B 42 542 115 HOH HOH . 
L 4 HOH B 43 543 118 HOH HOH . 
L 4 HOH B 44 544 122 HOH HOH . 
L 4 HOH B 45 545 123 HOH HOH . 
L 4 HOH B 46 546 124 HOH HOH . 
L 4 HOH B 47 547 125 HOH HOH . 
L 4 HOH B 48 548 126 HOH HOH . 
L 4 HOH B 49 549 127 HOH HOH . 
L 4 HOH B 50 550 130 HOH HOH . 
L 4 HOH B 51 551 131 HOH HOH . 
L 4 HOH B 52 552 132 HOH HOH . 
L 4 HOH B 53 553 133 HOH HOH . 
L 4 HOH B 54 554 138 HOH HOH . 
L 4 HOH B 55 555 141 HOH HOH . 
L 4 HOH B 56 556 142 HOH HOH . 
L 4 HOH B 57 557 146 HOH HOH . 
L 4 HOH B 58 558 147 HOH HOH . 
L 4 HOH B 59 559 151 HOH HOH . 
L 4 HOH B 60 560 152 HOH HOH . 
L 4 HOH B 61 561 153 HOH HOH . 
L 4 HOH B 62 562 154 HOH HOH . 
L 4 HOH B 63 563 155 HOH HOH . 
L 4 HOH B 64 564 158 HOH HOH . 
L 4 HOH B 65 565 160 HOH HOH . 
L 4 HOH B 66 566 165 HOH HOH . 
L 4 HOH B 67 567 168 HOH HOH . 
L 4 HOH B 68 568 171 HOH HOH . 
L 4 HOH B 69 569 173 HOH HOH . 
L 4 HOH B 70 570 174 HOH HOH . 
L 4 HOH B 71 571 176 HOH HOH . 
L 4 HOH B 72 572 178 HOH HOH . 
L 4 HOH B 73 573 183 HOH HOH . 
L 4 HOH B 74 574 186 HOH HOH . 
L 4 HOH B 75 575 188 HOH HOH . 
L 4 HOH B 76 576 196 HOH HOH . 
L 4 HOH B 77 577 199 HOH HOH . 
L 4 HOH B 78 578 200 HOH HOH . 
L 4 HOH B 79 579 201 HOH HOH . 
L 4 HOH B 80 580 202 HOH HOH . 
L 4 HOH B 81 581 206 HOH HOH . 
L 4 HOH B 82 582 216 HOH HOH . 
L 4 HOH B 83 583 218 HOH HOH . 
L 4 HOH B 84 584 219 HOH HOH . 
L 4 HOH B 85 585 220 HOH HOH . 
L 4 HOH B 86 586 221 HOH HOH . 
L 4 HOH B 87 587 222 HOH HOH . 
L 4 HOH B 88 588 223 HOH HOH . 
L 4 HOH B 89 589 226 HOH HOH . 
L 4 HOH B 90 590 227 HOH HOH . 
L 4 HOH B 91 591 228 HOH HOH . 
L 4 HOH B 92 592 239 HOH HOH . 
L 4 HOH B 93 593 242 HOH HOH . 
L 4 HOH B 94 594 247 HOH HOH . 
L 4 HOH B 95 595 248 HOH HOH . 
L 4 HOH B 96 596 250 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 3 0.324 -9.201 53.566 1 51.35 ? C1 EDO 404 A 1 
HETATM 2 O O1 EDO . . . F 3 0.045 -8 54.298 1 45.93 ? O1 EDO 404 A 1 
HETATM 3 C C2 EDO . . . F 3 1.466 -9.968 54.229 1 46.33 ? C2 EDO 404 A 1 
HETATM 4 O O2 EDO . . . F 3 2.724 -9.511 53.723 1 48.16 ? O2 EDO 404 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           225 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#