data_3VB6
#
_model_server_result.job_id            kCelDR5Qi9JVisSLOjtxMA 
_model_server_result.datetime_utc      '2024-11-14 23:29:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vb6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    3VB6 
#
_exptl.entry_id    3VB6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.48 
_cell.angle_gamma         90 
_cell.entry_id            3VB6 
_cell.length_a            52.096 
_cell.length_b            96.435 
_cell.length_c            67.694 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VB6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 145 A CYS 145 1_555 C C 0JU 7 E 0JU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.664 ? 
covale ? covale2 B SG CYS 145 B CYS 145 1_555 D C 0JU 7 F 0JU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.679 ? 
covale ? covale3 C C LEU 6 E LEU 6 1_555 C N 0JU 7 E 0JU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 sing 
covale ? covale4 D C LEU 6 F LEU 6 1_555 D N 0JU 7 F 0JU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 sing 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 102 n n 
C1 C2 EDO sing 103 n n 
C1 H11 EDO sing 104 n n 
C1 H12 EDO sing 105 n n 
O1 HO1 EDO sing 106 n n 
C2 O2 EDO sing 107 n n 
C2 H21 EDO sing 108 n n 
C2 H22 EDO sing 109 n n 
O2 HO2 EDO sing 110 n n 
#
_atom_sites.entry_id                     3VB6 
_atom_sites.fract_transf_matrix[1][1]    0.019195 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.0046 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01037 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015191 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 EDO A 1 401 1 EDO EDO . 
F 4 HOH A 1 501 1 HOH HOH . 
F 4 HOH A 2 502 6 HOH HOH . 
F 4 HOH A 3 503 7 HOH HOH . 
F 4 HOH A 4 504 8 HOH HOH . 
F 4 HOH A 5 505 9 HOH HOH . 
F 4 HOH A 6 506 13 HOH HOH . 
F 4 HOH A 7 507 25 HOH HOH . 
F 4 HOH A 8 508 26 HOH HOH . 
F 4 HOH A 9 509 39 HOH HOH . 
F 4 HOH A 10 510 40 HOH HOH . 
F 4 HOH A 11 511 41 HOH HOH . 
F 4 HOH A 12 512 42 HOH HOH . 
F 4 HOH A 13 513 43 HOH HOH . 
F 4 HOH A 14 514 47 HOH HOH . 
F 4 HOH A 15 515 50 HOH HOH . 
F 4 HOH A 16 516 52 HOH HOH . 
F 4 HOH A 17 517 53 HOH HOH . 
F 4 HOH A 18 518 54 HOH HOH . 
F 4 HOH A 19 519 65 HOH HOH . 
F 4 HOH A 20 520 68 HOH HOH . 
F 4 HOH A 21 521 73 HOH HOH . 
F 4 HOH A 22 522 92 HOH HOH . 
F 4 HOH A 23 523 97 HOH HOH . 
F 4 HOH A 24 524 98 HOH HOH . 
F 4 HOH A 25 525 101 HOH HOH . 
F 4 HOH A 26 526 103 HOH HOH . 
F 4 HOH A 27 527 104 HOH HOH . 
F 4 HOH A 28 528 109 HOH HOH . 
F 4 HOH A 29 529 110 HOH HOH . 
F 4 HOH A 30 530 111 HOH HOH . 
F 4 HOH A 31 531 115 HOH HOH . 
F 4 HOH A 32 532 125 HOH HOH . 
F 4 HOH A 33 533 126 HOH HOH . 
F 4 HOH A 34 534 128 HOH HOH . 
F 4 HOH A 35 535 129 HOH HOH . 
F 4 HOH A 36 536 137 HOH HOH . 
F 4 HOH A 37 537 141 HOH HOH . 
F 4 HOH A 38 538 144 HOH HOH . 
F 4 HOH A 39 539 149 HOH HOH . 
F 4 HOH A 40 540 150 HOH HOH . 
F 4 HOH A 41 541 151 HOH HOH . 
F 4 HOH A 42 542 152 HOH HOH . 
F 4 HOH A 43 543 154 HOH HOH . 
F 4 HOH A 44 544 155 HOH HOH . 
F 4 HOH A 45 545 157 HOH HOH . 
F 4 HOH A 46 546 162 HOH HOH . 
F 4 HOH A 47 547 164 HOH HOH . 
F 4 HOH A 48 548 165 HOH HOH . 
F 4 HOH A 49 549 166 HOH HOH . 
F 4 HOH A 50 550 170 HOH HOH . 
F 4 HOH A 51 551 176 HOH HOH . 
F 4 HOH A 52 552 178 HOH HOH . 
F 4 HOH A 53 553 180 HOH HOH . 
F 4 HOH A 54 554 181 HOH HOH . 
F 4 HOH A 55 555 182 HOH HOH . 
F 4 HOH A 56 556 183 HOH HOH . 
F 4 HOH A 57 557 184 HOH HOH . 
F 4 HOH A 58 558 192 HOH HOH . 
F 4 HOH A 59 559 193 HOH HOH . 
F 4 HOH A 60 560 197 HOH HOH . 
G 4 HOH B 1 401 121 HOH HOH . 
G 4 HOH B 2 402 124 HOH HOH . 
G 4 HOH B 3 403 3 HOH HOH . 
G 4 HOH B 4 404 4 HOH HOH . 
G 4 HOH B 5 405 5 HOH HOH . 
G 4 HOH B 6 406 10 HOH HOH . 
G 4 HOH B 7 407 12 HOH HOH . 
G 4 HOH B 8 408 14 HOH HOH . 
G 4 HOH B 9 409 16 HOH HOH . 
G 4 HOH B 10 410 17 HOH HOH . 
G 4 HOH B 11 411 18 HOH HOH . 
G 4 HOH B 12 412 19 HOH HOH . 
G 4 HOH B 13 413 22 HOH HOH . 
G 4 HOH B 14 414 23 HOH HOH . 
G 4 HOH B 15 415 28 HOH HOH . 
G 4 HOH B 16 416 29 HOH HOH . 
G 4 HOH B 17 417 30 HOH HOH . 
G 4 HOH B 18 418 32 HOH HOH . 
G 4 HOH B 19 419 34 HOH HOH . 
G 4 HOH B 20 420 35 HOH HOH . 
G 4 HOH B 21 421 36 HOH HOH . 
G 4 HOH B 22 422 37 HOH HOH . 
G 4 HOH B 23 423 38 HOH HOH . 
G 4 HOH B 24 424 44 HOH HOH . 
G 4 HOH B 25 425 46 HOH HOH . 
G 4 HOH B 26 426 48 HOH HOH . 
G 4 HOH B 27 427 51 HOH HOH . 
G 4 HOH B 28 428 58 HOH HOH . 
G 4 HOH B 29 429 63 HOH HOH . 
G 4 HOH B 30 430 64 HOH HOH . 
G 4 HOH B 31 431 67 HOH HOH . 
G 4 HOH B 32 432 69 HOH HOH . 
G 4 HOH B 33 433 72 HOH HOH . 
G 4 HOH B 34 434 76 HOH HOH . 
G 4 HOH B 35 435 78 HOH HOH . 
G 4 HOH B 36 436 79 HOH HOH . 
G 4 HOH B 37 437 80 HOH HOH . 
G 4 HOH B 38 438 85 HOH HOH . 
G 4 HOH B 39 439 86 HOH HOH . 
G 4 HOH B 40 440 87 HOH HOH . 
G 4 HOH B 41 441 89 HOH HOH . 
G 4 HOH B 42 442 99 HOH HOH . 
G 4 HOH B 43 443 102 HOH HOH . 
G 4 HOH B 44 444 105 HOH HOH . 
G 4 HOH B 45 445 106 HOH HOH . 
G 4 HOH B 46 446 107 HOH HOH . 
G 4 HOH B 47 447 112 HOH HOH . 
G 4 HOH B 48 448 117 HOH HOH . 
G 4 HOH B 49 449 118 HOH HOH . 
G 4 HOH B 50 450 120 HOH HOH . 
G 4 HOH B 51 451 127 HOH HOH . 
G 4 HOH B 52 452 130 HOH HOH . 
G 4 HOH B 53 453 132 HOH HOH . 
G 4 HOH B 54 454 139 HOH HOH . 
G 4 HOH B 55 455 140 HOH HOH . 
G 4 HOH B 56 456 143 HOH HOH . 
G 4 HOH B 57 457 146 HOH HOH . 
G 4 HOH B 58 458 147 HOH HOH . 
G 4 HOH B 59 459 153 HOH HOH . 
G 4 HOH B 60 460 156 HOH HOH . 
G 4 HOH B 61 461 160 HOH HOH . 
G 4 HOH B 62 462 168 HOH HOH . 
G 4 HOH B 63 463 169 HOH HOH . 
G 4 HOH B 64 464 171 HOH HOH . 
G 4 HOH B 65 465 172 HOH HOH . 
G 4 HOH B 66 466 177 HOH HOH . 
G 4 HOH B 67 467 187 HOH HOH . 
G 4 HOH B 68 468 188 HOH HOH . 
G 4 HOH B 69 469 189 HOH HOH . 
G 4 HOH B 70 470 190 HOH HOH . 
G 4 HOH B 71 471 191 HOH HOH . 
G 4 HOH B 72 472 195 HOH HOH . 
G 4 HOH B 73 473 200 HOH HOH . 
H 4 HOH F 1 101 198 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 3 -15.586 -8.172 27.421 1 38.33 ? C1 EDO 401 A 1 
HETATM 2 O O1 EDO . . . E 3 -14.997 -6.868 27.319 1 38.76 ? O1 EDO 401 A 1 
HETATM 3 C C2 EDO . . . E 3 -14.602 -9.108 28.111 1 37.05 ? C2 EDO 401 A 1 
HETATM 4 O O2 EDO . . . E 3 -13.364 -9.105 27.388 1 30.61 ? O2 EDO 401 A 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           371 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#