data_3VBG
#
_model_server_result.job_id            iEeite2rMe8xqzitV_cD8Q 
_model_server_result.datetime_utc      '2024-11-28 16:23:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vbg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1}' 
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_entry.id    3VBG 
#
_exptl.entry_id    3VBG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              401.794 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5Z)-5-[(6-chloro-7-methyl-1H-indol-3-yl)methylidene]-3-(3,4-difluorobenzyl)imidazolidine-2,4-dione 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3VBG 
_cell.length_a            64.392 
_cell.length_b            64.392 
_cell.length_c            167.587 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VBG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C20 H14 Cl F2 N3 O2' 
_chem_comp.formula_weight    401.794 
_chem_comp.id                03M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5Z)-5-[(6-chloro-7-methyl-1H-indol-3-yl)methylidene]-3-(3,4-difluorobenzyl)imidazolidine-2,4-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C4 C1 03M sing 1 n y 
C4 H4 03M sing 2 n n 
C6 C7 03M doub 3 n y 
C6 N5 03M sing 4 n y 
C6 H6 03M sing 5 n n 
C7 C8 03M sing 6 n y 
C8 C4 03M doub 7 n y 
C8 C9 03M sing 8 n y 
C10 C7 03M sing 9 n n 
C10 H10 03M sing 10 n n 
N12 C11 03M sing 11 n n 
C13 N12 03M sing 12 n n 
C15 O17 03M doub 13 n n 
C15 C11 03M sing 14 n n 
C20 C21 03M sing 15 n y 
C20 H20 03M sing 16 n n 
C21 H21 03M sing 17 n n 
C22 C21 03M doub 18 n y 
C22 F26 03M sing 19 n n 
C24 C19 03M sing 20 n y 
C24 C23 03M doub 21 n y 
C24 H24 03M sing 22 n n 
C1 C2 03M doub 23 n y 
C1 H1 03M sing 24 n n 
C2 CL 03M sing 25 n n 
C3 C2 03M sing 26 n y 
C3 C27 03M sing 27 n n 
N5 C9 03M sing 28 n y 
N5 HN5 03M sing 29 n n 
C9 C3 03M doub 30 n y 
C11 C10 03M doub 31 z n 
N14 C13 03M sing 32 n n 
N14 C15 03M sing 33 n n 
O16 C13 03M doub 34 n n 
C18 N14 03M sing 35 n n 
C18 C19 03M sing 36 n n 
C18 H18 03M sing 37 n n 
C18 H18A 03M sing 38 n n 
C19 C20 03M doub 39 n y 
C23 C22 03M sing 40 n y 
F25 C23 03M sing 41 n n 
C27 H27 03M sing 42 n n 
C27 H27A 03M sing 43 n n 
C27 H27B 03M sing 44 n n 
N12 H14 03M sing 45 n n 
#
_atom_sites.entry_id                     3VBG 
_atom_sites.fract_transf_matrix[1][1]    0.01553 
_atom_sites.fract_transf_matrix[1][2]    0.008966 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017932 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005967 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 03M A 1 1 1 03M LIG . 
F 2 03M B 1 1 1 03M LIG . 
G 2 03M C 1 1 1 03M LIG . 
H 2 03M D 1 1 1 03M LIG . 
I 3 HOH A 1 2 2 HOH HOH . 
I 3 HOH A 2 5 5 HOH HOH . 
I 3 HOH A 3 8 8 HOH HOH . 
I 3 HOH A 4 9 9 HOH HOH . 
I 3 HOH A 5 12 12 HOH HOH . 
I 3 HOH A 6 14 14 HOH HOH . 
J 3 HOH B 1 3 3 HOH HOH . 
J 3 HOH B 2 6 6 HOH HOH . 
J 3 HOH B 3 10 10 HOH HOH . 
J 3 HOH B 4 16 16 HOH HOH . 
J 3 HOH B 5 18 18 HOH HOH . 
K 3 HOH C 1 4 4 HOH HOH . 
K 3 HOH C 2 110 1 HOH HOH . 
L 3 HOH D 1 7 7 HOH HOH . 
L 3 HOH D 2 11 11 HOH HOH . 
L 3 HOH D 3 13 13 HOH HOH . 
L 3 HOH D 4 15 15 HOH HOH . 
L 3 HOH D 5 17 17 HOH HOH . 
L 3 HOH D 6 19 19 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 03M . . . F 2 11.772 -17.766 -5.202 1 86.26 ? C4 03M 1 B 1 
HETATM 2 C C6 03M . . . F 2 14.904 -17.027 -6.951 1 109.78 ? C6 03M 1 B 1 
HETATM 3 C C7 03M . . . F 2 13.524 -16.866 -6.795 1 105.34 ? C7 03M 1 B 1 
HETATM 4 C C8 03M . . . F 2 13.06 -17.666 -5.738 1 88.51 ? C8 03M 1 B 1 
HETATM 5 C C10 03M . . . F 2 12.665 -15.859 -7.562 1 92.86 ? C10 03M 1 B 1 
HETATM 6 N N12 03M . . . F 2 14.515 -14.951 -8.994 1 104.4 ? N12 03M 1 B 1 
HETATM 7 C C13 03M . . . F 2 14.524 -13.929 -9.906 1 98.19 ? C13 03M 1 B 1 
HETATM 8 C C15 03M . . . F 2 12.509 -13.924 -9.368 1 99.63 ? C15 03M 1 B 1 
HETATM 9 C C20 03M . . . F 2 11.247 -13.23 -12.507 1 103.76 ? C20 03M 1 B 1 
HETATM 10 C C21 03M . . . F 2 10.797 -13.696 -13.751 1 118.25 ? C21 03M 1 B 1 
HETATM 11 C C22 03M . . . F 2 11.725 -13.582 -14.845 1 113.1 ? C22 03M 1 B 1 
HETATM 12 C C24 03M . . . F 2 13.429 -12.571 -13.528 1 108.49 ? C24 03M 1 B 1 
HETATM 13 C C1 03M . . . F 2 11.598 -18.651 -4.153 1 95.28 ? C1 03M 1 B 1 
HETATM 14 C C2 03M . . . F 2 12.724 -19.354 -3.728 1 96.48 ? C2 03M 1 B 1 
HETATM 15 C C3 03M . . . F 2 14.01 -19.241 -4.206 1 101.48 ? C3 03M 1 B 1 
HETATM 16 N N5 03M . . . F 2 15.279 -17.967 -6.001 1 110.08 ? N5 03M 1 B 1 
HETATM 17 C C9 03M . . . F 2 14.177 -18.337 -5.253 1 96.61 ? C9 03M 1 B 1 
HETATM 18 C C11 03M . . . F 2 13.194 -14.97 -8.606 1 96.76 ? C11 03M 1 B 1 
HETATM 19 N N14 03M . . . F 2 13.367 -13.27 -10.135 1 95.97 ? N14 03M 1 B 1 
HETATM 20 O O16 03M . . . F 2 15.611 -13.58 -10.474 1 99.26 ? O16 03M 1 B 1 
HETATM 21 O O17 03M . . . F 2 11.259 -13.593 -9.297 1 128.61 ? O17 03M 1 B 1 
HETATM 22 C C18 03M . . . F 2 13.034 -12.173 -11.074 1 108.88 ? C18 03M 1 B 1 
HETATM 23 C C19 03M . . . F 2 12.538 -12.659 -12.424 1 111.69 ? C19 03M 1 B 1 
HETATM 24 C C23 03M . . . F 2 12.978 -13.048 -14.76 1 104.88 ? C23 03M 1 B 1 
HETATM 25 F F25 03M . . . F 2 13.737 -12.978 -15.885 1 108.85 ? F25 03M 1 B 1 
HETATM 26 F F26 03M . . . F 2 11.388 -14.007 -16.057 1 129.99 ? F26 03M 1 B 1 
HETATM 27 C C27 03M . . . F 2 15.098 -20.142 -3.554 1 87.61 ? C27 03M 1 B 1 
HETATM 28 CL CL 03M . . . F 2 12.562 -20.518 -2.437 1 105 ? CL 03M 1 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           28 
#