data_3VBI # _model_server_result.job_id t6Lpo7alqOa9MhQR1sqmYA _model_server_result.datetime_utc '2024-10-12 01:29:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vbi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":453}' # _entry.id 3VBI # _exptl.entry_id 3VBI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 61.017 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BICARBONATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VBI _cell.length_a 71.115 _cell.length_b 71.115 _cell.length_c 138.179 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VBI _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N ? 4 M N N # _chem_comp.formula 'C H O3 -1' _chem_comp.formula_weight 61.017 _chem_comp.id BCT _chem_comp.mon_nstd_flag . _chem_comp.name 'BICARBONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 BCT doub 134 n n C O2 BCT sing 135 n n C O3 BCT sing 136 n n O3 HO3 BCT sing 137 n n # _atom_sites.entry_id 3VBI _atom_sites.fract_transf_matrix[1][1] 0.014062 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 COA A 1 189 1 COA COA . E 3 0FX A 1 1500 1500 0FX NEW . F 4 BCT A 1 453 453 BCT BCT . G 2 COA C 1 189 1 COA COA . H 3 0FX C 1 1500 1500 0FX NEW . I 4 BCT C 1 453 453 BCT BCT . J 2 COA E 1 189 1 COA COA . K 5 CL E 1 190 1 CL CL . L 3 0FX E 1 1500 1500 0FX NEW . M 4 BCT E 1 453 453 BCT BCT . N 6 HOH A 1 190 190 HOH HOH . N 6 HOH A 2 191 191 HOH HOH . N 6 HOH A 3 192 192 HOH HOH . N 6 HOH A 4 193 193 HOH HOH . N 6 HOH A 5 194 1 HOH HOH . N 6 HOH A 6 195 3 HOH HOH . N 6 HOH A 7 196 4 HOH HOH . N 6 HOH A 8 197 5 HOH HOH . N 6 HOH A 9 198 6 HOH HOH . N 6 HOH A 10 199 20 HOH HOH . N 6 HOH A 11 200 33 HOH HOH . N 6 HOH A 12 201 34 HOH HOH . N 6 HOH A 13 202 35 HOH HOH . N 6 HOH A 14 203 38 HOH HOH . N 6 HOH A 15 204 204 HOH HOH . N 6 HOH A 16 205 39 HOH HOH . N 6 HOH A 17 206 206 HOH HOH . N 6 HOH A 18 207 207 HOH HOH . N 6 HOH A 19 208 40 HOH HOH . N 6 HOH A 20 209 209 HOH HOH . N 6 HOH A 21 210 210 HOH HOH . N 6 HOH A 22 211 211 HOH HOH . N 6 HOH A 23 212 212 HOH HOH . N 6 HOH A 24 213 42 HOH HOH . N 6 HOH A 25 214 43 HOH HOH . N 6 HOH A 26 215 215 HOH HOH . N 6 HOH A 27 216 216 HOH HOH . N 6 HOH A 28 217 217 HOH HOH . N 6 HOH A 29 218 218 HOH HOH . N 6 HOH A 30 219 219 HOH HOH . N 6 HOH A 31 220 220 HOH HOH . N 6 HOH A 32 221 221 HOH HOH . N 6 HOH A 33 222 222 HOH HOH . N 6 HOH A 34 223 223 HOH HOH . N 6 HOH A 35 224 224 HOH HOH . N 6 HOH A 36 225 225 HOH HOH . N 6 HOH A 37 226 226 HOH HOH . N 6 HOH A 38 227 72 HOH HOH . N 6 HOH A 39 228 228 HOH HOH . N 6 HOH A 40 229 229 HOH HOH . N 6 HOH A 41 230 230 HOH HOH . N 6 HOH A 42 231 231 HOH HOH . N 6 HOH A 43 232 77 HOH HOH . N 6 HOH A 44 233 233 HOH HOH . N 6 HOH A 45 234 81 HOH HOH . N 6 HOH A 46 235 235 HOH HOH . N 6 HOH A 47 236 236 HOH HOH . N 6 HOH A 48 237 237 HOH HOH . N 6 HOH A 49 238 238 HOH HOH . N 6 HOH A 50 239 239 HOH HOH . N 6 HOH A 51 240 240 HOH HOH . N 6 HOH A 52 241 241 HOH HOH . N 6 HOH A 53 242 242 HOH HOH . N 6 HOH A 54 243 243 HOH HOH . N 6 HOH A 55 244 244 HOH HOH . N 6 HOH A 56 245 245 HOH HOH . N 6 HOH A 57 246 82 HOH HOH . N 6 HOH A 58 247 86 HOH HOH . N 6 HOH A 59 248 87 HOH HOH . N 6 HOH A 60 249 94 HOH HOH . N 6 HOH A 61 250 95 HOH HOH . N 6 HOH A 62 251 99 HOH HOH . N 6 HOH A 63 252 100 HOH HOH . N 6 HOH A 64 253 101 HOH HOH . N 6 HOH A 65 254 102 HOH HOH . N 6 HOH A 66 255 103 HOH HOH . N 6 HOH A 67 256 104 HOH HOH . N 6 HOH A 68 257 105 HOH HOH . N 6 HOH A 69 258 106 HOH HOH . N 6 HOH A 70 259 259 HOH HOH . N 6 HOH A 71 260 108 HOH HOH . N 6 HOH A 72 261 110 HOH HOH . N 6 HOH A 73 262 111 HOH HOH . N 6 HOH A 74 263 112 HOH HOH . N 6 HOH A 75 264 113 HOH HOH . N 6 HOH A 76 265 114 HOH HOH . N 6 HOH A 77 266 115 HOH HOH . N 6 HOH A 78 267 116 HOH HOH . N 6 HOH A 79 268 117 HOH HOH . N 6 HOH A 80 269 118 HOH HOH . N 6 HOH A 81 270 119 HOH HOH . N 6 HOH A 82 271 120 HOH HOH . N 6 HOH A 83 272 121 HOH HOH . N 6 HOH A 84 273 154 HOH HOH . N 6 HOH A 85 274 160 HOH HOH . N 6 HOH A 86 275 163 HOH HOH . N 6 HOH A 87 276 165 HOH HOH . N 6 HOH A 88 277 169 HOH HOH . N 6 HOH A 89 278 170 HOH HOH . N 6 HOH A 90 279 171 HOH HOH . N 6 HOH A 91 280 172 HOH HOH . N 6 HOH A 92 281 173 HOH HOH . N 6 HOH A 93 282 174 HOH HOH . N 6 HOH A 94 283 175 HOH HOH . N 6 HOH A 95 284 176 HOH HOH . N 6 HOH A 96 285 177 HOH HOH . N 6 HOH A 97 286 179 HOH HOH . N 6 HOH A 98 287 180 HOH HOH . N 6 HOH A 99 288 182 HOH HOH . N 6 HOH A 100 289 183 HOH HOH . N 6 HOH A 101 290 184 HOH HOH . N 6 HOH A 102 291 185 HOH HOH . N 6 HOH A 103 292 187 HOH HOH . N 6 HOH A 104 293 293 HOH HOH . N 6 HOH A 105 294 188 HOH HOH . N 6 HOH A 106 295 189 HOH HOH . N 6 HOH A 107 303 303 HOH HOH . N 6 HOH A 108 304 304 HOH HOH . N 6 HOH A 109 305 305 HOH HOH . N 6 HOH A 110 308 308 HOH HOH . N 6 HOH A 111 316 316 HOH HOH . N 6 HOH A 112 317 317 HOH HOH . O 6 HOH C 1 190 7 HOH HOH . O 6 HOH C 2 191 8 HOH HOH . O 6 HOH C 3 192 9 HOH HOH . O 6 HOH C 4 193 12 HOH HOH . O 6 HOH C 5 194 194 HOH HOH . O 6 HOH C 6 195 195 HOH HOH . O 6 HOH C 7 196 196 HOH HOH . O 6 HOH C 8 197 14 HOH HOH . O 6 HOH C 9 198 15 HOH HOH . O 6 HOH C 10 199 18 HOH HOH . O 6 HOH C 11 200 19 HOH HOH . O 6 HOH C 12 201 22 HOH HOH . O 6 HOH C 13 202 23 HOH HOH . O 6 HOH C 14 203 24 HOH HOH . O 6 HOH C 15 204 25 HOH HOH . O 6 HOH C 16 205 26 HOH HOH . O 6 HOH C 17 206 27 HOH HOH . O 6 HOH C 18 207 28 HOH HOH . O 6 HOH C 19 208 208 HOH HOH . O 6 HOH C 20 209 29 HOH HOH . O 6 HOH C 21 210 30 HOH HOH . O 6 HOH C 22 211 31 HOH HOH . O 6 HOH C 23 212 32 HOH HOH . O 6 HOH C 24 213 213 HOH HOH . O 6 HOH C 25 214 214 HOH HOH . O 6 HOH C 26 215 37 HOH HOH . O 6 HOH C 27 216 41 HOH HOH . O 6 HOH C 28 217 47 HOH HOH . O 6 HOH C 29 218 52 HOH HOH . O 6 HOH C 30 219 53 HOH HOH . O 6 HOH C 31 220 54 HOH HOH . O 6 HOH C 32 221 55 HOH HOH . O 6 HOH C 33 222 56 HOH HOH . O 6 HOH C 34 223 57 HOH HOH . O 6 HOH C 35 224 58 HOH HOH . O 6 HOH C 36 225 59 HOH HOH . O 6 HOH C 37 226 60 HOH HOH . O 6 HOH C 38 227 62 HOH HOH . O 6 HOH C 39 228 63 HOH HOH . O 6 HOH C 40 229 64 HOH HOH . O 6 HOH C 41 230 96 HOH HOH . O 6 HOH C 42 231 97 HOH HOH . O 6 HOH C 43 232 232 HOH HOH . O 6 HOH C 44 233 98 HOH HOH . O 6 HOH C 45 234 107 HOH HOH . O 6 HOH C 46 235 122 HOH HOH . O 6 HOH C 47 236 123 HOH HOH . O 6 HOH C 48 237 124 HOH HOH . O 6 HOH C 49 238 125 HOH HOH . O 6 HOH C 50 239 126 HOH HOH . O 6 HOH C 51 240 127 HOH HOH . O 6 HOH C 52 241 128 HOH HOH . O 6 HOH C 53 242 129 HOH HOH . O 6 HOH C 54 243 130 HOH HOH . O 6 HOH C 55 244 131 HOH HOH . O 6 HOH C 56 245 132 HOH HOH . O 6 HOH C 57 246 246 HOH HOH . O 6 HOH C 58 247 133 HOH HOH . O 6 HOH C 59 248 134 HOH HOH . O 6 HOH C 60 249 137 HOH HOH . O 6 HOH C 61 250 250 HOH HOH . O 6 HOH C 62 251 251 HOH HOH . O 6 HOH C 63 252 138 HOH HOH . O 6 HOH C 64 253 139 HOH HOH . O 6 HOH C 65 254 254 HOH HOH . O 6 HOH C 66 255 255 HOH HOH . O 6 HOH C 67 256 256 HOH HOH . O 6 HOH C 68 257 146 HOH HOH . O 6 HOH C 69 258 258 HOH HOH . O 6 HOH C 70 259 157 HOH HOH . O 6 HOH C 71 260 260 HOH HOH . O 6 HOH C 72 261 261 HOH HOH . O 6 HOH C 73 262 262 HOH HOH . O 6 HOH C 74 263 263 HOH HOH . O 6 HOH C 75 264 264 HOH HOH . O 6 HOH C 76 265 265 HOH HOH . O 6 HOH C 77 266 266 HOH HOH . O 6 HOH C 78 267 267 HOH HOH . O 6 HOH C 79 268 268 HOH HOH . O 6 HOH C 80 269 269 HOH HOH . O 6 HOH C 81 270 270 HOH HOH . O 6 HOH C 82 271 271 HOH HOH . O 6 HOH C 83 272 272 HOH HOH . O 6 HOH C 84 273 273 HOH HOH . O 6 HOH C 85 274 274 HOH HOH . O 6 HOH C 86 275 275 HOH HOH . O 6 HOH C 87 276 158 HOH HOH . O 6 HOH C 88 277 161 HOH HOH . O 6 HOH C 89 278 162 HOH HOH . O 6 HOH C 90 294 294 HOH HOH . O 6 HOH C 91 295 295 HOH HOH . O 6 HOH C 92 296 296 HOH HOH . O 6 HOH C 93 297 297 HOH HOH . O 6 HOH C 94 298 298 HOH HOH . O 6 HOH C 95 307 307 HOH HOH . O 6 HOH C 96 309 309 HOH HOH . O 6 HOH C 97 312 312 HOH HOH . P 6 HOH E 1 191 10 HOH HOH . P 6 HOH E 2 192 13 HOH HOH . P 6 HOH E 3 193 16 HOH HOH . P 6 HOH E 4 194 17 HOH HOH . P 6 HOH E 5 195 44 HOH HOH . P 6 HOH E 6 196 45 HOH HOH . P 6 HOH E 7 197 197 HOH HOH . P 6 HOH E 8 198 46 HOH HOH . P 6 HOH E 9 199 199 HOH HOH . P 6 HOH E 10 200 200 HOH HOH . P 6 HOH E 11 201 201 HOH HOH . P 6 HOH E 12 202 202 HOH HOH . P 6 HOH E 13 203 203 HOH HOH . P 6 HOH E 14 204 48 HOH HOH . P 6 HOH E 15 205 49 HOH HOH . P 6 HOH E 16 206 50 HOH HOH . P 6 HOH E 17 207 51 HOH HOH . P 6 HOH E 18 208 65 HOH HOH . P 6 HOH E 19 209 66 HOH HOH . P 6 HOH E 20 210 67 HOH HOH . P 6 HOH E 21 211 68 HOH HOH . P 6 HOH E 22 212 69 HOH HOH . P 6 HOH E 23 213 70 HOH HOH . P 6 HOH E 24 214 73 HOH HOH . P 6 HOH E 25 215 74 HOH HOH . P 6 HOH E 26 216 75 HOH HOH . P 6 HOH E 27 217 76 HOH HOH . P 6 HOH E 28 218 78 HOH HOH . P 6 HOH E 29 219 79 HOH HOH . P 6 HOH E 30 220 80 HOH HOH . P 6 HOH E 31 221 83 HOH HOH . P 6 HOH E 32 222 84 HOH HOH . P 6 HOH E 33 223 85 HOH HOH . P 6 HOH E 34 224 88 HOH HOH . P 6 HOH E 35 225 89 HOH HOH . P 6 HOH E 36 226 90 HOH HOH . P 6 HOH E 37 227 91 HOH HOH . P 6 HOH E 38 228 92 HOH HOH . P 6 HOH E 39 229 93 HOH HOH . P 6 HOH E 40 230 109 HOH HOH . P 6 HOH E 41 231 141 HOH HOH . P 6 HOH E 42 232 142 HOH HOH . P 6 HOH E 43 233 144 HOH HOH . P 6 HOH E 44 234 234 HOH HOH . P 6 HOH E 45 235 147 HOH HOH . P 6 HOH E 46 236 148 HOH HOH . P 6 HOH E 47 237 149 HOH HOH . P 6 HOH E 48 238 151 HOH HOH . P 6 HOH E 49 239 152 HOH HOH . P 6 HOH E 50 240 153 HOH HOH . P 6 HOH E 51 241 155 HOH HOH . P 6 HOH E 52 242 156 HOH HOH . P 6 HOH E 53 243 159 HOH HOH . P 6 HOH E 54 244 164 HOH HOH . P 6 HOH E 55 245 166 HOH HOH . P 6 HOH E 56 246 167 HOH HOH . P 6 HOH E 57 247 168 HOH HOH . P 6 HOH E 58 248 248 HOH HOH . P 6 HOH E 59 249 249 HOH HOH . P 6 HOH E 60 250 178 HOH HOH . P 6 HOH E 61 251 186 HOH HOH . P 6 HOH E 62 252 252 HOH HOH . P 6 HOH E 63 253 253 HOH HOH . P 6 HOH E 64 257 257 HOH HOH . P 6 HOH E 65 276 276 HOH HOH . P 6 HOH E 66 277 277 HOH HOH . P 6 HOH E 67 278 278 HOH HOH . P 6 HOH E 68 279 279 HOH HOH . P 6 HOH E 69 280 280 HOH HOH . P 6 HOH E 70 281 281 HOH HOH . P 6 HOH E 71 282 282 HOH HOH . P 6 HOH E 72 283 283 HOH HOH . P 6 HOH E 73 284 284 HOH HOH . P 6 HOH E 74 285 285 HOH HOH . P 6 HOH E 75 286 286 HOH HOH . P 6 HOH E 76 287 287 HOH HOH . P 6 HOH E 77 288 288 HOH HOH . P 6 HOH E 78 289 289 HOH HOH . P 6 HOH E 79 290 290 HOH HOH . P 6 HOH E 80 291 291 HOH HOH . P 6 HOH E 81 292 292 HOH HOH . P 6 HOH E 82 299 299 HOH HOH . P 6 HOH E 83 300 300 HOH HOH . P 6 HOH E 84 301 301 HOH HOH . P 6 HOH E 85 310 310 HOH HOH . P 6 HOH E 86 311 311 HOH HOH . P 6 HOH E 87 313 313 HOH HOH . P 6 HOH E 88 314 314 HOH HOH . P 6 HOH E 89 315 315 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C BCT . . . I 4 -44.265 1.481 0.359 0.5 23.87 ? C BCT 453 C 1 HETATM 2 O O1 BCT . . . I 4 -44.95 2.234 -0.368 0.5 25.5 ? O1 BCT 453 C 1 HETATM 3 O O2 BCT . . . I 4 -43.697 0.525 -0.194 0.5 21.93 ? O2 BCT 453 C 1 HETATM 4 O O3 BCT . . . I 4 -44.129 1.661 1.676 0.5 23.71 ? O3 BCT 453 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #