data_3VBK # _model_server_result.job_id qJtKd9ETTAyORuRl74evCQ _model_server_result.datetime_utc '2024-11-25 03:53:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vbk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":189}' # _entry.id 3VBK # _exptl.entry_id 3VBK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VBK _cell.length_a 71.254 _cell.length_b 71.254 _cell.length_c 138.382 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VBK _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 H N N ? 2 K N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 138 n y N1A C6A COA doub 139 n y C2A N3A COA doub 140 n y C2A H2A COA sing 141 n n N3A C4A COA sing 142 n y C4A C5A COA doub 143 n y C4A N9A COA sing 144 n y C5A C6A COA sing 145 n y C5A N7A COA sing 146 n y C6A N6A COA sing 147 n n N6A H61A COA sing 148 n n N6A H62A COA sing 149 n n N7A C8A COA doub 150 n y C8A N9A COA sing 151 n y C8A H8A COA sing 152 n n N9A C1B COA sing 153 n n C1B C2B COA sing 154 n n C1B O4B COA sing 155 n n C1B H1B COA sing 156 n n C2B O2B COA sing 157 n n C2B C3B COA sing 158 n n C2B H2B COA sing 159 n n O2B HO2A COA sing 160 n n C3B O3B COA sing 161 n n C3B C4B COA sing 162 n n C3B H3B COA sing 163 n n O3B P3B COA sing 164 n n P3B O7A COA doub 165 n n P3B O8A COA sing 166 n n P3B O9A COA sing 167 n n O8A HOA8 COA sing 168 n n O9A HOA9 COA sing 169 n n C4B O4B COA sing 170 n n C4B C5B COA sing 171 n n C4B H4B COA sing 172 n n C5B O5B COA sing 173 n n C5B H51A COA sing 174 n n C5B H52A COA sing 175 n n O5B P1A COA sing 176 n n P1A O1A COA doub 177 n n P1A O2A COA sing 178 n n P1A O3A COA sing 179 n n O2A HOA2 COA sing 180 n n O3A P2A COA sing 181 n n P2A O4A COA doub 182 n n P2A O5A COA sing 183 n n P2A O6A COA sing 184 n n O5A HOA5 COA sing 185 n n O6A CCP COA sing 186 n n CBP CCP COA sing 187 n n CBP CDP COA sing 188 n n CBP CEP COA sing 189 n n CBP CAP COA sing 190 n n CCP H121 COA sing 191 n n CCP H122 COA sing 192 n n CDP H131 COA sing 193 n n CDP H132 COA sing 194 n n CDP H133 COA sing 195 n n CEP H141 COA sing 196 n n CEP H142 COA sing 197 n n CEP H143 COA sing 198 n n CAP OAP COA sing 199 n n CAP C9P COA sing 200 n n CAP H10 COA sing 201 n n OAP HO1 COA sing 202 n n C9P O9P COA doub 203 n n C9P N8P COA sing 204 n n N8P C7P COA sing 205 n n N8P HN8 COA sing 206 n n C7P C6P COA sing 207 n n C7P H71 COA sing 208 n n C7P H72 COA sing 209 n n C6P C5P COA sing 210 n n C6P H61 COA sing 211 n n C6P H62 COA sing 212 n n C5P O5P COA doub 213 n n C5P N4P COA sing 214 n n N4P C3P COA sing 215 n n N4P HN4 COA sing 216 n n C3P C2P COA sing 217 n n C3P H31 COA sing 218 n n C3P H32 COA sing 219 n n C2P S1P COA sing 220 n n C2P H21 COA sing 221 n n C2P H22 COA sing 222 n n S1P HS1 COA sing 223 n n # _atom_sites.entry_id 3VBK _atom_sites.fract_transf_matrix[1][1] 0.014034 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014034 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 COA A 1 189 1 COA COA . E 3 0FX A 1 1500 1500 0FX NEW . F 4 CL A 1 190 1 CL CL . G 5 BCT A 1 453 453 BCT BCT . H 2 COA C 1 189 1 COA COA . I 3 0FX C 1 1500 1500 0FX NEW . J 5 BCT C 1 453 453 BCT BCT . K 2 COA E 1 189 1 COA COA . L 3 0FX E 1 1500 1500 0FX NEW . M 5 BCT E 1 453 453 BCT BCT . N 6 HOH A 1 191 2 HOH HOH . N 6 HOH A 2 192 3 HOH HOH . N 6 HOH A 3 193 4 HOH HOH . N 6 HOH A 4 194 5 HOH HOH . N 6 HOH A 5 195 6 HOH HOH . N 6 HOH A 6 196 8 HOH HOH . N 6 HOH A 7 197 9 HOH HOH . N 6 HOH A 8 198 10 HOH HOH . N 6 HOH A 9 199 11 HOH HOH . N 6 HOH A 10 200 12 HOH HOH . N 6 HOH A 11 201 13 HOH HOH . N 6 HOH A 12 202 15 HOH HOH . N 6 HOH A 13 203 16 HOH HOH . N 6 HOH A 14 204 17 HOH HOH . N 6 HOH A 15 205 18 HOH HOH . N 6 HOH A 16 206 19 HOH HOH . N 6 HOH A 17 207 20 HOH HOH . N 6 HOH A 18 208 21 HOH HOH . N 6 HOH A 19 209 22 HOH HOH . N 6 HOH A 20 210 23 HOH HOH . N 6 HOH A 21 211 24 HOH HOH . N 6 HOH A 22 212 25 HOH HOH . N 6 HOH A 23 213 33 HOH HOH . N 6 HOH A 24 214 36 HOH HOH . N 6 HOH A 25 215 37 HOH HOH . N 6 HOH A 26 216 39 HOH HOH . N 6 HOH A 27 217 41 HOH HOH . N 6 HOH A 28 218 44 HOH HOH . N 6 HOH A 29 219 56 HOH HOH . N 6 HOH A 30 220 57 HOH HOH . N 6 HOH A 31 221 58 HOH HOH . N 6 HOH A 32 222 59 HOH HOH . N 6 HOH A 33 223 60 HOH HOH . N 6 HOH A 34 224 61 HOH HOH . N 6 HOH A 35 225 62 HOH HOH . N 6 HOH A 36 226 66 HOH HOH . N 6 HOH A 37 227 67 HOH HOH . N 6 HOH A 38 228 68 HOH HOH . N 6 HOH A 39 229 69 HOH HOH . N 6 HOH A 40 230 70 HOH HOH . N 6 HOH A 41 231 75 HOH HOH . N 6 HOH A 42 232 76 HOH HOH . N 6 HOH A 43 233 77 HOH HOH . N 6 HOH A 44 234 78 HOH HOH . N 6 HOH A 45 235 79 HOH HOH . N 6 HOH A 46 236 80 HOH HOH . N 6 HOH A 47 237 81 HOH HOH . N 6 HOH A 48 238 82 HOH HOH . N 6 HOH A 49 239 83 HOH HOH . N 6 HOH A 50 240 84 HOH HOH . N 6 HOH A 51 241 85 HOH HOH . N 6 HOH A 52 242 86 HOH HOH . N 6 HOH A 53 243 89 HOH HOH . N 6 HOH A 54 244 90 HOH HOH . N 6 HOH A 55 245 91 HOH HOH . N 6 HOH A 56 246 92 HOH HOH . N 6 HOH A 57 247 93 HOH HOH . N 6 HOH A 58 248 95 HOH HOH . N 6 HOH A 59 249 98 HOH HOH . N 6 HOH A 60 250 99 HOH HOH . N 6 HOH A 61 251 100 HOH HOH . N 6 HOH A 62 252 104 HOH HOH . N 6 HOH A 63 253 105 HOH HOH . N 6 HOH A 64 254 108 HOH HOH . O 6 HOH C 1 190 26 HOH HOH . O 6 HOH C 2 191 27 HOH HOH . O 6 HOH C 3 192 28 HOH HOH . O 6 HOH C 4 193 29 HOH HOH . O 6 HOH C 5 194 30 HOH HOH . O 6 HOH C 6 195 31 HOH HOH . O 6 HOH C 7 196 32 HOH HOH . O 6 HOH C 8 197 34 HOH HOH . O 6 HOH C 9 198 35 HOH HOH . O 6 HOH C 10 199 45 HOH HOH . O 6 HOH C 11 200 46 HOH HOH . O 6 HOH C 12 201 47 HOH HOH . O 6 HOH C 13 202 71 HOH HOH . O 6 HOH C 14 203 87 HOH HOH . O 6 HOH C 15 204 88 HOH HOH . O 6 HOH C 16 205 106 HOH HOH . O 6 HOH C 17 206 107 HOH HOH . O 6 HOH C 18 207 109 HOH HOH . O 6 HOH C 19 208 110 HOH HOH . O 6 HOH C 20 209 111 HOH HOH . O 6 HOH C 21 210 112 HOH HOH . O 6 HOH C 22 211 113 HOH HOH . O 6 HOH C 23 212 115 HOH HOH . O 6 HOH C 24 213 116 HOH HOH . O 6 HOH C 25 214 117 HOH HOH . O 6 HOH C 26 215 118 HOH HOH . O 6 HOH C 27 216 119 HOH HOH . O 6 HOH C 28 217 120 HOH HOH . O 6 HOH C 29 218 124 HOH HOH . O 6 HOH C 30 219 125 HOH HOH . O 6 HOH C 31 220 128 HOH HOH . O 6 HOH C 32 221 129 HOH HOH . O 6 HOH C 33 222 130 HOH HOH . O 6 HOH C 34 223 131 HOH HOH . O 6 HOH C 35 224 132 HOH HOH . O 6 HOH C 36 225 133 HOH HOH . O 6 HOH C 37 226 134 HOH HOH . O 6 HOH C 38 227 135 HOH HOH . O 6 HOH C 39 228 136 HOH HOH . O 6 HOH C 40 229 137 HOH HOH . O 6 HOH C 41 230 139 HOH HOH . O 6 HOH C 42 231 140 HOH HOH . O 6 HOH C 43 232 141 HOH HOH . O 6 HOH C 44 233 145 HOH HOH . O 6 HOH C 45 234 146 HOH HOH . O 6 HOH C 46 235 156 HOH HOH . O 6 HOH C 47 236 160 HOH HOH . P 6 HOH E 1 190 14 HOH HOH . P 6 HOH E 2 191 38 HOH HOH . P 6 HOH E 3 192 40 HOH HOH . P 6 HOH E 4 193 42 HOH HOH . P 6 HOH E 5 194 43 HOH HOH . P 6 HOH E 6 195 48 HOH HOH . P 6 HOH E 7 196 49 HOH HOH . P 6 HOH E 8 197 50 HOH HOH . P 6 HOH E 9 198 51 HOH HOH . P 6 HOH E 10 199 52 HOH HOH . P 6 HOH E 11 200 53 HOH HOH . P 6 HOH E 12 201 54 HOH HOH . P 6 HOH E 13 202 55 HOH HOH . P 6 HOH E 14 203 64 HOH HOH . P 6 HOH E 15 204 65 HOH HOH . P 6 HOH E 16 205 72 HOH HOH . P 6 HOH E 17 206 73 HOH HOH . P 6 HOH E 18 207 94 HOH HOH . P 6 HOH E 19 208 96 HOH HOH . P 6 HOH E 20 209 101 HOH HOH . P 6 HOH E 21 210 102 HOH HOH . P 6 HOH E 22 211 103 HOH HOH . P 6 HOH E 23 212 122 HOH HOH . P 6 HOH E 24 213 138 HOH HOH . P 6 HOH E 25 214 142 HOH HOH . P 6 HOH E 26 215 143 HOH HOH . P 6 HOH E 27 216 144 HOH HOH . P 6 HOH E 28 217 147 HOH HOH . P 6 HOH E 29 218 148 HOH HOH . P 6 HOH E 30 219 149 HOH HOH . P 6 HOH E 31 220 150 HOH HOH . P 6 HOH E 32 221 151 HOH HOH . P 6 HOH E 33 222 154 HOH HOH . P 6 HOH E 34 223 155 HOH HOH . P 6 HOH E 35 224 157 HOH HOH . P 6 HOH E 36 225 158 HOH HOH . P 6 HOH E 37 226 159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . K 2 16.645 -36.939 -4.423 1 16.63 ? N1A COA 189 E 1 HETATM 2 C C2A COA . . . K 2 17.98 -36.791 -4.535 1 20.41 ? C2A COA 189 E 1 HETATM 3 N N3A COA . . . K 2 18.782 -36.871 -3.461 1 17.72 ? N3A COA 189 E 1 HETATM 4 C C4A COA . . . K 2 18.296 -37.09 -2.221 1 18.12 ? C4A COA 189 E 1 HETATM 5 C C5A COA . . . K 2 16.936 -37.292 -2.069 1 19.35 ? C5A COA 189 E 1 HETATM 6 C C6A COA . . . K 2 16.122 -37.217 -3.203 1 18.8 ? C6A COA 189 E 1 HETATM 7 N N6A COA . . . K 2 14.779 -37.388 -3.094 1 22.47 ? N6A COA 189 E 1 HETATM 8 N N7A COA . . . K 2 16.718 -37.494 -0.742 1 20.56 ? N7A COA 189 E 1 HETATM 9 C C8A COA . . . K 2 17.924 -37.433 -0.129 1 17.85 ? C8A COA 189 E 1 HETATM 10 N N9A COA . . . K 2 18.88 -37.194 -1.016 1 22.95 ? N9A COA 189 E 1 HETATM 11 C C1B COA . . . K 2 20.345 -37.153 -0.747 1 24.79 ? C1B COA 189 E 1 HETATM 12 C C2B COA . . . K 2 20.781 -36.114 0.288 1 26.27 ? C2B COA 189 E 1 HETATM 13 O O2B COA . . . K 2 21.228 -34.982 -0.456 1 27.24 ? O2B COA 189 E 1 HETATM 14 C C3B COA . . . K 2 21.972 -36.79 0.971 1 31.98 ? C3B COA 189 E 1 HETATM 15 O O3B COA . . . K 2 23.07 -36.567 0.076 1 35.39 ? O3B COA 189 E 1 HETATM 16 P P3B COA . . . K 2 24.613 -36.618 0.569 1 41.56 ? P3B COA 189 E 1 HETATM 17 O O7A COA . . . K 2 25.307 -36.716 -0.765 1 34.46 ? O7A COA 189 E 1 HETATM 18 O O8A COA . . . K 2 24.785 -37.85 1.439 1 43.13 ? O8A COA 189 E 1 HETATM 19 O O9A COA . . . K 2 24.549 -35.383 1.429 1 40.84 ? O9A COA 189 E 1 HETATM 20 C C4B COA . . . K 2 21.646 -38.298 0.901 1 26.1 ? C4B COA 189 E 1 HETATM 21 O O4B COA . . . K 2 20.754 -38.443 -0.226 1 26 ? O4B COA 189 E 1 HETATM 22 C C5B COA . . . K 2 20.921 -38.751 2.169 1 23.2 ? C5B COA 189 E 1 HETATM 23 O O5B COA . . . K 2 19.866 -37.836 2.443 1 24.2 ? O5B COA 189 E 1 HETATM 24 P P1A COA . . . K 2 19.077 -37.792 3.839 1 28.8 ? P1A COA 189 E 1 HETATM 25 O O1A COA . . . K 2 17.93 -36.819 3.886 1 22.92 ? O1A COA 189 E 1 HETATM 26 O O2A COA . . . K 2 20.255 -37.798 4.763 1 27.73 ? O2A COA 189 E 1 HETATM 27 O O3A COA . . . K 2 18.4 -39.259 3.963 1 26.62 ? O3A COA 189 E 1 HETATM 28 P P2A COA . . . K 2 16.981 -39.714 4.561 1 27.12 ? P2A COA 189 E 1 HETATM 29 O O4A COA . . . K 2 17.214 -41.206 4.635 1 33.08 ? O4A COA 189 E 1 HETATM 30 O O5A COA . . . K 2 16.187 -39.036 5.637 1 29.05 ? O5A COA 189 E 1 HETATM 31 O O6A COA . . . K 2 15.88 -39.46 3.41 1 27.16 ? O6A COA 189 E 1 HETATM 32 C CBP COA . . . K 2 14.69 -40.177 1.437 1 22.8 ? CBP COA 189 E 1 HETATM 33 C CCP COA . . . K 2 16.059 -40.026 2.109 1 20.72 ? CCP COA 189 E 1 HETATM 34 C CDP COA . . . K 2 15.038 -40.517 -0.007 1 18.1 ? CDP COA 189 E 1 HETATM 35 C CEP COA . . . K 2 14.021 -41.312 2.219 1 26.29 ? CEP COA 189 E 1 HETATM 36 C CAP COA . . . K 2 13.838 -38.897 1.449 1 19.99 ? CAP COA 189 E 1 HETATM 37 O OAP COA . . . K 2 14.786 -37.852 1.151 1 24.82 ? OAP COA 189 E 1 HETATM 38 C C9P COA . . . K 2 12.787 -38.924 0.349 1 23.54 ? C9P COA 189 E 1 HETATM 39 O O9P COA . . . K 2 13.091 -38.705 -0.82 1 20.11 ? O9P COA 189 E 1 HETATM 40 N N8P COA . . . K 2 11.516 -39.158 0.665 1 17.55 ? N8P COA 189 E 1 HETATM 41 C C7P COA . . . K 2 10.376 -39.242 -0.236 1 20.28 ? C7P COA 189 E 1 HETATM 42 C C6P COA . . . K 2 9.105 -38.947 0.575 1 14.75 ? C6P COA 189 E 1 HETATM 43 C C5P COA . . . K 2 7.954 -39.209 -0.362 1 19.75 ? C5P COA 189 E 1 HETATM 44 O O5P COA . . . K 2 8.109 -39.237 -1.582 1 18.43 ? O5P COA 189 E 1 HETATM 45 N N4P COA . . . K 2 6.763 -39.352 0.205 1 21.25 ? N4P COA 189 E 1 HETATM 46 C C3P COA . . . K 2 5.473 -39.563 -0.438 1 26.43 ? C3P COA 189 E 1 HETATM 47 C C2P COA . . . K 2 4.368 -39.608 0.605 1 31.97 ? C2P COA 189 E 1 HETATM 48 S S1P COA . . . K 2 4.535 -41.1 1.628 1 34.93 ? S1P COA 189 E 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #