data_3VBM # _model_server_result.job_id jxmeHRceo1NNq-8ZQD6qBQ _model_server_result.datetime_utc '2024-11-30 23:21:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vbm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":453}' # _entry.id 3VBM # _exptl.entry_id 3VBM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 61.017 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BICARBONATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VBM _cell.length_a 71.042 _cell.length_b 71.042 _cell.length_c 138.855 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VBM _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 K N N ? 4 M N N # _chem_comp.formula 'C H O3 -1' _chem_comp.formula_weight 61.017 _chem_comp.id BCT _chem_comp.mon_nstd_flag . _chem_comp.name 'BICARBONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 BCT doub 70 n n C O2 BCT sing 71 n n C O3 BCT sing 72 n n O3 HO3 BCT sing 73 n n # _atom_sites.entry_id 3VBM _atom_sites.fract_transf_matrix[1][1] 0.014076 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 COA A 1 189 1 COA COA . E 2 COA A 1 190 1 COA COA . F 3 TYD A 1 301 301 TYD TYD . G 4 BCT A 1 453 453 BCT BCT . H 2 COA C 1 189 1 COA COA . I 5 CL C 1 190 1 CL CL . J 3 TYD C 1 301 301 TYD TYD . K 4 BCT C 1 453 453 BCT BCT . L 3 TYD E 1 301 301 TYD TYD . M 4 BCT E 1 453 453 BCT BCT . N 6 HOH A 1 191 1 HOH HOH . N 6 HOH A 2 192 2 HOH HOH . N 6 HOH A 3 193 3 HOH HOH . N 6 HOH A 4 194 6 HOH HOH . N 6 HOH A 5 195 7 HOH HOH . N 6 HOH A 6 196 9 HOH HOH . N 6 HOH A 7 197 10 HOH HOH . N 6 HOH A 8 198 11 HOH HOH . N 6 HOH A 9 199 12 HOH HOH . N 6 HOH A 10 200 13 HOH HOH . N 6 HOH A 11 201 14 HOH HOH . N 6 HOH A 12 202 15 HOH HOH . N 6 HOH A 13 203 16 HOH HOH . N 6 HOH A 14 204 17 HOH HOH . N 6 HOH A 15 205 18 HOH HOH . N 6 HOH A 16 206 19 HOH HOH . N 6 HOH A 17 207 207 HOH HOH . N 6 HOH A 18 208 208 HOH HOH . N 6 HOH A 19 209 209 HOH HOH . N 6 HOH A 20 210 20 HOH HOH . N 6 HOH A 21 211 21 HOH HOH . N 6 HOH A 22 212 22 HOH HOH . N 6 HOH A 23 213 25 HOH HOH . N 6 HOH A 24 214 26 HOH HOH . N 6 HOH A 25 215 28 HOH HOH . N 6 HOH A 26 216 216 HOH HOH . N 6 HOH A 27 217 29 HOH HOH . N 6 HOH A 28 218 30 HOH HOH . N 6 HOH A 29 219 31 HOH HOH . N 6 HOH A 30 220 32 HOH HOH . N 6 HOH A 31 221 33 HOH HOH . N 6 HOH A 32 222 34 HOH HOH . N 6 HOH A 33 223 35 HOH HOH . N 6 HOH A 34 224 36 HOH HOH . N 6 HOH A 35 225 40 HOH HOH . N 6 HOH A 36 226 41 HOH HOH . N 6 HOH A 37 227 42 HOH HOH . N 6 HOH A 38 228 228 HOH HOH . N 6 HOH A 39 229 229 HOH HOH . N 6 HOH A 40 230 230 HOH HOH . N 6 HOH A 41 231 231 HOH HOH . N 6 HOH A 42 232 232 HOH HOH . N 6 HOH A 43 233 233 HOH HOH . N 6 HOH A 44 234 234 HOH HOH . N 6 HOH A 45 235 235 HOH HOH . N 6 HOH A 46 236 236 HOH HOH . N 6 HOH A 47 237 237 HOH HOH . N 6 HOH A 48 238 238 HOH HOH . N 6 HOH A 49 239 43 HOH HOH . N 6 HOH A 50 240 44 HOH HOH . N 6 HOH A 51 241 45 HOH HOH . N 6 HOH A 52 242 49 HOH HOH . N 6 HOH A 53 243 50 HOH HOH . N 6 HOH A 54 244 244 HOH HOH . N 6 HOH A 55 245 52 HOH HOH . N 6 HOH A 56 246 246 HOH HOH . N 6 HOH A 57 247 247 HOH HOH . N 6 HOH A 58 248 248 HOH HOH . N 6 HOH A 59 249 249 HOH HOH . N 6 HOH A 60 250 250 HOH HOH . N 6 HOH A 61 251 57 HOH HOH . N 6 HOH A 62 252 252 HOH HOH . N 6 HOH A 63 253 253 HOH HOH . N 6 HOH A 64 254 59 HOH HOH . N 6 HOH A 65 255 60 HOH HOH . N 6 HOH A 66 256 61 HOH HOH . N 6 HOH A 67 257 63 HOH HOH . N 6 HOH A 68 258 64 HOH HOH . N 6 HOH A 69 259 65 HOH HOH . N 6 HOH A 70 260 66 HOH HOH . N 6 HOH A 71 261 67 HOH HOH . N 6 HOH A 72 262 68 HOH HOH . N 6 HOH A 73 263 69 HOH HOH . N 6 HOH A 74 264 264 HOH HOH . N 6 HOH A 75 265 70 HOH HOH . N 6 HOH A 76 266 71 HOH HOH . N 6 HOH A 77 267 72 HOH HOH . N 6 HOH A 78 268 73 HOH HOH . N 6 HOH A 79 269 74 HOH HOH . N 6 HOH A 80 270 75 HOH HOH . N 6 HOH A 81 271 271 HOH HOH . N 6 HOH A 82 272 76 HOH HOH . N 6 HOH A 83 273 77 HOH HOH . N 6 HOH A 84 274 78 HOH HOH . N 6 HOH A 85 275 79 HOH HOH . N 6 HOH A 86 276 80 HOH HOH . N 6 HOH A 87 277 81 HOH HOH . N 6 HOH A 88 278 82 HOH HOH . N 6 HOH A 89 279 83 HOH HOH . N 6 HOH A 90 280 85 HOH HOH . N 6 HOH A 91 281 93 HOH HOH . N 6 HOH A 92 282 98 HOH HOH . N 6 HOH A 93 283 99 HOH HOH . N 6 HOH A 94 284 100 HOH HOH . N 6 HOH A 95 285 101 HOH HOH . N 6 HOH A 96 286 102 HOH HOH . N 6 HOH A 97 287 134 HOH HOH . N 6 HOH A 98 288 164 HOH HOH . N 6 HOH A 99 289 165 HOH HOH . N 6 HOH A 100 290 166 HOH HOH . N 6 HOH A 101 291 167 HOH HOH . N 6 HOH A 102 292 168 HOH HOH . N 6 HOH A 103 293 169 HOH HOH . N 6 HOH A 104 294 170 HOH HOH . N 6 HOH A 105 295 171 HOH HOH . N 6 HOH A 106 296 172 HOH HOH . N 6 HOH A 107 297 174 HOH HOH . N 6 HOH A 108 298 175 HOH HOH . N 6 HOH A 109 299 176 HOH HOH . N 6 HOH A 110 300 177 HOH HOH . N 6 HOH A 111 302 178 HOH HOH . N 6 HOH A 112 303 179 HOH HOH . N 6 HOH A 113 304 180 HOH HOH . N 6 HOH A 114 305 181 HOH HOH . N 6 HOH A 115 306 182 HOH HOH . N 6 HOH A 116 307 183 HOH HOH . N 6 HOH A 117 308 184 HOH HOH . N 6 HOH A 118 309 185 HOH HOH . N 6 HOH A 119 310 186 HOH HOH . N 6 HOH A 120 311 187 HOH HOH . O 6 HOH C 1 192 23 HOH HOH . O 6 HOH C 2 193 24 HOH HOH . O 6 HOH C 3 194 27 HOH HOH . O 6 HOH C 4 195 195 HOH HOH . O 6 HOH C 5 196 37 HOH HOH . O 6 HOH C 6 197 84 HOH HOH . O 6 HOH C 7 198 198 HOH HOH . O 6 HOH C 8 199 86 HOH HOH . O 6 HOH C 9 200 88 HOH HOH . O 6 HOH C 10 201 91 HOH HOH . O 6 HOH C 11 202 103 HOH HOH . O 6 HOH C 12 203 104 HOH HOH . O 6 HOH C 13 204 105 HOH HOH . O 6 HOH C 14 205 106 HOH HOH . O 6 HOH C 15 206 107 HOH HOH . O 6 HOH C 16 207 109 HOH HOH . O 6 HOH C 17 208 110 HOH HOH . O 6 HOH C 18 209 111 HOH HOH . O 6 HOH C 19 210 210 HOH HOH . O 6 HOH C 20 211 211 HOH HOH . O 6 HOH C 21 212 212 HOH HOH . O 6 HOH C 22 213 213 HOH HOH . O 6 HOH C 23 214 214 HOH HOH . O 6 HOH C 24 215 215 HOH HOH . O 6 HOH C 25 216 112 HOH HOH . O 6 HOH C 26 217 217 HOH HOH . O 6 HOH C 27 218 218 HOH HOH . O 6 HOH C 28 219 219 HOH HOH . O 6 HOH C 29 220 220 HOH HOH . O 6 HOH C 30 221 221 HOH HOH . O 6 HOH C 31 222 222 HOH HOH . O 6 HOH C 32 223 223 HOH HOH . O 6 HOH C 33 224 224 HOH HOH . O 6 HOH C 34 225 225 HOH HOH . O 6 HOH C 35 226 226 HOH HOH . O 6 HOH C 36 227 227 HOH HOH . O 6 HOH C 37 228 113 HOH HOH . O 6 HOH C 38 229 114 HOH HOH . O 6 HOH C 39 230 115 HOH HOH . O 6 HOH C 40 231 116 HOH HOH . O 6 HOH C 41 232 117 HOH HOH . O 6 HOH C 42 233 118 HOH HOH . O 6 HOH C 43 234 119 HOH HOH . O 6 HOH C 44 235 121 HOH HOH . O 6 HOH C 45 236 122 HOH HOH . O 6 HOH C 46 237 123 HOH HOH . O 6 HOH C 47 238 129 HOH HOH . O 6 HOH C 48 239 239 HOH HOH . O 6 HOH C 49 240 130 HOH HOH . O 6 HOH C 50 241 132 HOH HOH . O 6 HOH C 51 242 135 HOH HOH . O 6 HOH C 52 243 136 HOH HOH . O 6 HOH C 53 244 137 HOH HOH . O 6 HOH C 54 245 138 HOH HOH . O 6 HOH C 55 246 139 HOH HOH . O 6 HOH C 56 247 140 HOH HOH . O 6 HOH C 57 248 141 HOH HOH . O 6 HOH C 58 249 142 HOH HOH . O 6 HOH C 59 250 143 HOH HOH . O 6 HOH C 60 251 251 HOH HOH . O 6 HOH C 61 252 144 HOH HOH . O 6 HOH C 62 253 145 HOH HOH . O 6 HOH C 63 254 254 HOH HOH . O 6 HOH C 64 255 255 HOH HOH . O 6 HOH C 65 256 256 HOH HOH . O 6 HOH C 66 257 257 HOH HOH . O 6 HOH C 67 258 258 HOH HOH . O 6 HOH C 68 259 259 HOH HOH . O 6 HOH C 69 260 260 HOH HOH . O 6 HOH C 70 261 261 HOH HOH . O 6 HOH C 71 262 262 HOH HOH . O 6 HOH C 72 263 263 HOH HOH . O 6 HOH C 73 264 146 HOH HOH . O 6 HOH C 74 265 265 HOH HOH . O 6 HOH C 75 266 266 HOH HOH . O 6 HOH C 76 267 267 HOH HOH . O 6 HOH C 77 268 268 HOH HOH . O 6 HOH C 78 269 269 HOH HOH . O 6 HOH C 79 270 270 HOH HOH . O 6 HOH C 80 271 147 HOH HOH . O 6 HOH C 81 272 272 HOH HOH . O 6 HOH C 82 273 273 HOH HOH . O 6 HOH C 83 274 274 HOH HOH . O 6 HOH C 84 275 148 HOH HOH . O 6 HOH C 85 276 276 HOH HOH . O 6 HOH C 86 277 149 HOH HOH . O 6 HOH C 87 278 158 HOH HOH . O 6 HOH C 88 279 163 HOH HOH . O 6 HOH C 89 280 188 HOH HOH . O 6 HOH C 90 283 283 HOH HOH . O 6 HOH C 91 284 284 HOH HOH . P 6 HOH E 1 189 189 HOH HOH . P 6 HOH E 2 190 8 HOH HOH . P 6 HOH E 3 191 191 HOH HOH . P 6 HOH E 4 192 192 HOH HOH . P 6 HOH E 5 193 193 HOH HOH . P 6 HOH E 6 194 194 HOH HOH . P 6 HOH E 7 195 46 HOH HOH . P 6 HOH E 8 196 196 HOH HOH . P 6 HOH E 9 197 197 HOH HOH . P 6 HOH E 10 198 47 HOH HOH . P 6 HOH E 11 199 199 HOH HOH . P 6 HOH E 12 200 48 HOH HOH . P 6 HOH E 13 201 201 HOH HOH . P 6 HOH E 14 202 202 HOH HOH . P 6 HOH E 15 203 203 HOH HOH . P 6 HOH E 16 204 204 HOH HOH . P 6 HOH E 17 205 205 HOH HOH . P 6 HOH E 18 206 206 HOH HOH . P 6 HOH E 19 207 51 HOH HOH . P 6 HOH E 20 208 53 HOH HOH . P 6 HOH E 21 209 54 HOH HOH . P 6 HOH E 22 210 55 HOH HOH . P 6 HOH E 23 211 58 HOH HOH . P 6 HOH E 24 212 87 HOH HOH . P 6 HOH E 25 213 89 HOH HOH . P 6 HOH E 26 214 90 HOH HOH . P 6 HOH E 27 215 92 HOH HOH . P 6 HOH E 28 216 94 HOH HOH . P 6 HOH E 29 217 95 HOH HOH . P 6 HOH E 30 218 96 HOH HOH . P 6 HOH E 31 219 97 HOH HOH . P 6 HOH E 32 220 120 HOH HOH . P 6 HOH E 33 221 124 HOH HOH . P 6 HOH E 34 222 125 HOH HOH . P 6 HOH E 35 223 126 HOH HOH . P 6 HOH E 36 224 127 HOH HOH . P 6 HOH E 37 225 128 HOH HOH . P 6 HOH E 38 226 131 HOH HOH . P 6 HOH E 39 227 150 HOH HOH . P 6 HOH E 40 228 152 HOH HOH . P 6 HOH E 41 229 153 HOH HOH . P 6 HOH E 42 230 154 HOH HOH . P 6 HOH E 43 231 155 HOH HOH . P 6 HOH E 44 232 156 HOH HOH . P 6 HOH E 45 233 157 HOH HOH . P 6 HOH E 46 234 160 HOH HOH . P 6 HOH E 47 235 161 HOH HOH . P 6 HOH E 48 236 162 HOH HOH . P 6 HOH E 49 237 173 HOH HOH . P 6 HOH E 50 238 39 HOH HOH . P 6 HOH E 51 239 281 HOH HOH . P 6 HOH E 52 240 240 HOH HOH . P 6 HOH E 53 241 241 HOH HOH . P 6 HOH E 54 242 242 HOH HOH . P 6 HOH E 55 243 243 HOH HOH . P 6 HOH E 56 245 245 HOH HOH . P 6 HOH E 57 275 275 HOH HOH . P 6 HOH E 58 277 277 HOH HOH . P 6 HOH E 59 278 278 HOH HOH . P 6 HOH E 60 279 279 HOH HOH . P 6 HOH E 61 280 280 HOH HOH . P 6 HOH E 62 281 190 HOH HOH . P 6 HOH E 63 282 282 HOH HOH . P 6 HOH E 64 285 285 HOH HOH . P 6 HOH E 65 286 286 HOH HOH . P 6 HOH E 66 287 287 HOH HOH . P 6 HOH E 67 288 288 HOH HOH . P 6 HOH E 68 289 289 HOH HOH . P 6 HOH E 69 290 290 HOH HOH . P 6 HOH E 70 291 291 HOH HOH . P 6 HOH E 71 292 292 HOH HOH . P 6 HOH E 72 293 293 HOH HOH . P 6 HOH E 73 294 294 HOH HOH . P 6 HOH E 74 295 295 HOH HOH . P 6 HOH E 75 296 296 HOH HOH . P 6 HOH E 76 297 297 HOH HOH . P 6 HOH E 77 298 298 HOH HOH . P 6 HOH E 78 299 299 HOH HOH . P 6 HOH E 79 300 300 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C BCT . . . M 4 1.557 18.116 10.792 1 34.31 ? C BCT 453 E 1 HETATM 2 O O1 BCT . . . M 4 1.46 19.236 10.205 1 34.65 ? O1 BCT 453 E 1 HETATM 3 O O2 BCT . . . M 4 2.384 17.229 10.428 1 34.01 ? O2 BCT 453 E 1 HETATM 4 O O3 BCT . . . M 4 0.708 17.888 11.802 1 28.88 ? O3 BCT 453 E 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #