data_3VBN
#
_model_server_result.job_id            zc1PksyEimvue_XpCfbhxg 
_model_server_result.datetime_utc      '2024-11-30 23:12:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vbn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":189}' 
#
_entry.id    3VBN 
#
_exptl.entry_id    3VBN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              767.534 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COENZYME A' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3VBN 
_cell.length_a            71.076 
_cell.length_b            71.076 
_cell.length_c            137.749 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VBN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 G N N 
? 2 I N N 
#
_chem_comp.formula           'C21 H36 N7 O16 P3 S' 
_chem_comp.formula_weight    767.534 
_chem_comp.id                COA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COENZYME A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1A C2A COA sing 70 n y 
N1A C6A COA doub 71 n y 
C2A N3A COA doub 72 n y 
C2A H2A COA sing 73 n n 
N3A C4A COA sing 74 n y 
C4A C5A COA doub 75 n y 
C4A N9A COA sing 76 n y 
C5A C6A COA sing 77 n y 
C5A N7A COA sing 78 n y 
C6A N6A COA sing 79 n n 
N6A H61A COA sing 80 n n 
N6A H62A COA sing 81 n n 
N7A C8A COA doub 82 n y 
C8A N9A COA sing 83 n y 
C8A H8A COA sing 84 n n 
N9A C1B COA sing 85 n n 
C1B C2B COA sing 86 n n 
C1B O4B COA sing 87 n n 
C1B H1B COA sing 88 n n 
C2B O2B COA sing 89 n n 
C2B C3B COA sing 90 n n 
C2B H2B COA sing 91 n n 
O2B HO2A COA sing 92 n n 
C3B O3B COA sing 93 n n 
C3B C4B COA sing 94 n n 
C3B H3B COA sing 95 n n 
O3B P3B COA sing 96 n n 
P3B O7A COA doub 97 n n 
P3B O8A COA sing 98 n n 
P3B O9A COA sing 99 n n 
O8A HOA8 COA sing 100 n n 
O9A HOA9 COA sing 101 n n 
C4B O4B COA sing 102 n n 
C4B C5B COA sing 103 n n 
C4B H4B COA sing 104 n n 
C5B O5B COA sing 105 n n 
C5B H51A COA sing 106 n n 
C5B H52A COA sing 107 n n 
O5B P1A COA sing 108 n n 
P1A O1A COA doub 109 n n 
P1A O2A COA sing 110 n n 
P1A O3A COA sing 111 n n 
O2A HOA2 COA sing 112 n n 
O3A P2A COA sing 113 n n 
P2A O4A COA doub 114 n n 
P2A O5A COA sing 115 n n 
P2A O6A COA sing 116 n n 
O5A HOA5 COA sing 117 n n 
O6A CCP COA sing 118 n n 
CBP CCP COA sing 119 n n 
CBP CDP COA sing 120 n n 
CBP CEP COA sing 121 n n 
CBP CAP COA sing 122 n n 
CCP H121 COA sing 123 n n 
CCP H122 COA sing 124 n n 
CDP H131 COA sing 125 n n 
CDP H132 COA sing 126 n n 
CDP H133 COA sing 127 n n 
CEP H141 COA sing 128 n n 
CEP H142 COA sing 129 n n 
CEP H143 COA sing 130 n n 
CAP OAP COA sing 131 n n 
CAP C9P COA sing 132 n n 
CAP H10 COA sing 133 n n 
OAP HO1 COA sing 134 n n 
C9P O9P COA doub 135 n n 
C9P N8P COA sing 136 n n 
N8P C7P COA sing 137 n n 
N8P HN8 COA sing 138 n n 
C7P C6P COA sing 139 n n 
C7P H71 COA sing 140 n n 
C7P H72 COA sing 141 n n 
C6P C5P COA sing 142 n n 
C6P H61 COA sing 143 n n 
C6P H62 COA sing 144 n n 
C5P O5P COA doub 145 n n 
C5P N4P COA sing 146 n n 
N4P C3P COA sing 147 n n 
N4P HN4 COA sing 148 n n 
C3P C2P COA sing 149 n n 
C3P H31 COA sing 150 n n 
C3P H32 COA sing 151 n n 
C2P S1P COA sing 152 n n 
C2P H21 COA sing 153 n n 
C2P H22 COA sing 154 n n 
S1P HS1 COA sing 155 n n 
#
_atom_sites.entry_id                     3VBN 
_atom_sites.fract_transf_matrix[1][1]    0.014069 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014069 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00726 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 COA A 1 189 1 COA COA . 
E 3 TYD A 1 301 301 TYD TYD . 
F 4 CL A 1 190 1 CL CL . 
G 2 COA C 1 189 1 COA COA . 
H 3 TYD C 1 301 301 TYD TYD . 
I 2 COA E 1 189 1 COA COA . 
J 3 TYD E 1 301 301 TYD TYD . 
K 5 HOH A 1 191 1 HOH HOH . 
K 5 HOH A 2 192 2 HOH HOH . 
K 5 HOH A 3 193 3 HOH HOH . 
K 5 HOH A 4 194 5 HOH HOH . 
K 5 HOH A 5 195 7 HOH HOH . 
K 5 HOH A 6 196 8 HOH HOH . 
K 5 HOH A 7 197 9 HOH HOH . 
K 5 HOH A 8 198 28 HOH HOH . 
K 5 HOH A 9 199 29 HOH HOH . 
K 5 HOH A 10 200 30 HOH HOH . 
K 5 HOH A 11 201 31 HOH HOH . 
K 5 HOH A 12 202 33 HOH HOH . 
K 5 HOH A 13 203 34 HOH HOH . 
K 5 HOH A 14 204 35 HOH HOH . 
K 5 HOH A 15 205 36 HOH HOH . 
K 5 HOH A 16 206 43 HOH HOH . 
K 5 HOH A 17 207 53 HOH HOH . 
K 5 HOH A 18 208 59 HOH HOH . 
K 5 HOH A 19 209 62 HOH HOH . 
K 5 HOH A 20 210 63 HOH HOH . 
K 5 HOH A 21 211 67 HOH HOH . 
L 5 HOH C 1 190 4 HOH HOH . 
L 5 HOH C 2 191 11 HOH HOH . 
L 5 HOH C 3 192 12 HOH HOH . 
L 5 HOH C 4 193 14 HOH HOH . 
L 5 HOH C 5 194 15 HOH HOH . 
L 5 HOH C 6 195 16 HOH HOH . 
L 5 HOH C 7 196 17 HOH HOH . 
L 5 HOH C 8 197 18 HOH HOH . 
L 5 HOH C 9 198 19 HOH HOH . 
L 5 HOH C 10 199 20 HOH HOH . 
L 5 HOH C 11 200 21 HOH HOH . 
L 5 HOH C 12 201 46 HOH HOH . 
L 5 HOH C 13 202 47 HOH HOH . 
L 5 HOH C 14 203 48 HOH HOH . 
L 5 HOH C 15 204 49 HOH HOH . 
L 5 HOH C 16 205 50 HOH HOH . 
L 5 HOH C 17 206 64 HOH HOH . 
L 5 HOH C 18 207 65 HOH HOH . 
M 5 HOH E 1 190 13 HOH HOH . 
M 5 HOH E 2 191 22 HOH HOH . 
M 5 HOH E 3 192 23 HOH HOH . 
M 5 HOH E 4 193 24 HOH HOH . 
M 5 HOH E 5 194 25 HOH HOH . 
M 5 HOH E 6 195 26 HOH HOH . 
M 5 HOH E 7 196 37 HOH HOH . 
M 5 HOH E 8 197 38 HOH HOH . 
M 5 HOH E 9 198 39 HOH HOH . 
M 5 HOH E 10 199 40 HOH HOH . 
M 5 HOH E 11 200 41 HOH HOH . 
M 5 HOH E 12 201 42 HOH HOH . 
M 5 HOH E 13 202 44 HOH HOH . 
M 5 HOH E 14 203 51 HOH HOH . 
M 5 HOH E 15 204 52 HOH HOH . 
M 5 HOH E 16 205 55 HOH HOH . 
M 5 HOH E 17 206 56 HOH HOH . 
M 5 HOH E 18 207 57 HOH HOH . 
M 5 HOH E 19 208 58 HOH HOH . 
M 5 HOH E 20 209 60 HOH HOH . 
M 5 HOH E 21 210 66 HOH HOH . 
M 5 HOH E 22 211 68 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1A COA . . . D 2 9.417 18.829 -9.285 1 20.01 ? N1A COA 189 A 1 
HETATM 2 C C2A COA . . . D 2 9.101 17.53 -9.133 1 20.71 ? C2A COA 189 A 1 
HETATM 3 N N3A COA . . . D 2 10.011 16.57 -9.374 1 21.17 ? N3A COA 189 A 1 
HETATM 4 C C4A COA . . . D 2 11.228 16.961 -9.802 1 20.11 ? C4A COA 189 A 1 
HETATM 5 C C5A COA . . . D 2 11.591 18.286 -10.002 1 19.32 ? C5A COA 189 A 1 
HETATM 6 C C6A COA . . . D 2 10.627 19.243 -9.708 1 17.44 ? C6A COA 189 A 1 
HETATM 7 N N6A COA . . . D 2 10.839 20.57 -9.844 1 17.42 ? N6A COA 189 A 1 
HETATM 8 N N7A COA . . . D 2 12.864 18.315 -10.456 1 18.02 ? N7A COA 189 A 1 
HETATM 9 C C8A COA . . . D 2 13.268 17.034 -10.538 1 20.43 ? C8A COA 189 A 1 
HETATM 10 N N9A COA . . . D 2 12.259 16.238 -10.145 1 22.07 ? N9A COA 189 A 1 
HETATM 11 C C1B COA . . . D 2 12.201 14.78 -10.004 1 26.26 ? C1B COA 189 A 1 
HETATM 12 C C2B COA . . . D 2 12.612 14.084 -11.28 1 28.39 ? C2B COA 189 A 1 
HETATM 13 O O2B COA . . . D 2 11.538 13.318 -11.815 1 29.57 ? O2B COA 189 A 1 
HETATM 14 C C3B COA . . . D 2 13.617 13.072 -10.814 1 30.2 ? C3B COA 189 A 1 
HETATM 15 O O3B COA . . . D 2 12.755 12.083 -10.272 1 34.1 ? O3B COA 189 A 1 
HETATM 16 P P3B COA . . . D 2 13.303 10.604 -9.935 1 40.42 ? P3B COA 189 A 1 
HETATM 17 O O7A COA . . . D 2 14.197 10.324 -11.134 1 35.44 ? O7A COA 189 A 1 
HETATM 18 O O8A COA . . . D 2 14.055 10.773 -8.635 1 37.92 ? O8A COA 189 A 1 
HETATM 19 O O9A COA . . . D 2 12.052 9.72 -9.865 1 36.64 ? O9A COA 189 A 1 
HETATM 20 C C4B COA . . . D 2 14.245 13.692 -9.575 1 31.38 ? C4B COA 189 A 1 
HETATM 21 O O4B COA . . . D 2 13.275 14.617 -9.075 1 29.7 ? O4B COA 189 A 1 
HETATM 22 C C5B COA . . . D 2 15.67 14.211 -9.777 1 30.49 ? C5B COA 189 A 1 
HETATM 23 O O5B COA . . . D 2 15.657 15.16 -10.835 1 33.36 ? O5B COA 189 A 1 
HETATM 24 P P1A COA . . . D 2 16.949 15.394 -11.793 1 34.94 ? P1A COA 189 A 1 
HETATM 25 O O1A COA . . . D 2 16.426 16.331 -12.849 1 34.44 ? O1A COA 189 A 1 
HETATM 26 O O2A COA . . . D 2 17.532 14.067 -12.223 1 31.03 ? O2A COA 189 A 1 
HETATM 27 O O3A COA . . . D 2 17.927 16.216 -10.794 1 33.13 ? O3A COA 189 A 1 
HETATM 28 P P2A COA . . . D 2 18.519 17.672 -11.167 1 32.27 ? P2A COA 189 A 1 
HETATM 29 O O4A COA . . . D 2 19.498 18.145 -10.121 1 33.95 ? O4A COA 189 A 1 
HETATM 30 O O5A COA . . . D 2 19.031 17.584 -12.584 1 32.59 ? O5A COA 189 A 1 
HETATM 31 O O6A COA . . . D 2 17.284 18.697 -11.131 1 30.11 ? O6A COA 189 A 1 
HETATM 32 C CBP COA . . . D 2 16.41 20.721 -10.023 1 23.07 ? CBP COA 189 A 1 
HETATM 33 C CCP COA . . . D 2 16.871 19.276 -9.896 1 26.19 ? CCP COA 189 A 1 
HETATM 34 C CDP COA . . . D 2 15.72 20.907 -8.686 1 21.04 ? CDP COA 189 A 1 
HETATM 35 C CEP COA . . . D 2 17.597 21.677 -10.069 1 22.56 ? CEP COA 189 A 1 
HETATM 36 C CAP COA . . . D 2 15.492 20.99 -11.238 1 21.9 ? CAP COA 189 A 1 
HETATM 37 O OAP COA . . . D 2 14.805 19.806 -11.68 1 21.95 ? OAP COA 189 A 1 
HETATM 38 C C9P COA . . . D 2 14.502 22.089 -10.948 1 22.57 ? C9P COA 189 A 1 
HETATM 39 O O9P COA . . . D 2 13.368 21.893 -10.52 1 23.14 ? O9P COA 189 A 1 
HETATM 40 N N8P COA . . . D 2 14.968 23.322 -11.115 1 22.06 ? N8P COA 189 A 1 
HETATM 41 C C7P COA . . . D 2 14.283 24.582 -10.869 1 20.09 ? C7P COA 189 A 1 
HETATM 42 C C6P COA . . . D 2 14.976 25.647 -11.712 1 17.4 ? C6P COA 189 A 1 
HETATM 43 C C5P COA . . . D 2 14.183 26.928 -11.634 1 17.88 ? C5P COA 189 A 1 
HETATM 44 O O5P COA . . . D 2 13.147 27.009 -10.992 1 14.23 ? O5P COA 189 A 1 
HETATM 45 N N4P COA . . . D 2 14.702 27.965 -12.291 1 22.1 ? N4P COA 189 A 1 
HETATM 46 C C3P COA . . . D 2 14.176 29.324 -12.386 1 26.27 ? C3P COA 189 A 1 
HETATM 47 C C2P COA . . . D 2 15.172 30.157 -13.19 1 31.64 ? C2P COA 189 A 1 
HETATM 48 S S1P COA . . . D 2 16.702 30.532 -12.285 1 36.72 ? S1P COA 189 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           221 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           48 
#