data_3VBW # _model_server_result.job_id YTlPgaFaw2KhMyGTqDXGzg _model_server_result.datetime_utc '2024-10-19 17:39:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vbw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3VBW # _exptl.entry_id 3VBW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 171.152 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,3-dioxo-2,3-dihydro-1H-indene-2-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3VBW _cell.length_a 97 _cell.length_b 97 _cell.length_c 81 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VBW _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H5 N O2' _chem_comp.formula_weight 171.152 _chem_comp.id 0FN _chem_comp.mon_nstd_flag . _chem_comp.name 1,3-dioxo-2,3-dihydro-1H-indene-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAI CAB 0FN doub 1 n n CAJ CAM 0FN doub 2 n y CAJ CAE 0FN sing 3 n y CAM CAL 0FN sing 4 n y CAB CAE 0FN sing 5 n n CAB CAA 0FN sing 6 n n CAE CAD 0FN doub 7 n y CAL CAK 0FN doub 8 n y CAA CAF 0FN sing 9 n n CAA CAC 0FN sing 10 n n CAF NAG 0FN trip 11 n n CAD CAK 0FN sing 12 n y CAD CAC 0FN sing 13 n n CAC OAH 0FN doub 14 n n CAK H1 0FN sing 15 n n CAL H2 0FN sing 16 n n CAM H3 0FN sing 17 n n CAJ H4 0FN sing 18 n n CAA H5 0FN sing 19 n n # _atom_sites.entry_id 3VBW _atom_sites.fract_transf_matrix[1][1] 0.010309 _atom_sites.fract_transf_matrix[1][2] 0.005952 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011904 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0FN A 1 1 1 0FN 0FN . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 4 4 HOH HOH . C 3 HOH A 3 5 5 HOH HOH . C 3 HOH A 4 6 6 HOH HOH . C 3 HOH A 5 7 7 HOH HOH . C 3 HOH A 6 8 8 HOH HOH . C 3 HOH A 7 9 9 HOH HOH . C 3 HOH A 8 11 11 HOH HOH . C 3 HOH A 9 12 12 HOH HOH . C 3 HOH A 10 13 13 HOH HOH . C 3 HOH A 11 14 14 HOH HOH . C 3 HOH A 12 15 15 HOH HOH . C 3 HOH A 13 16 16 HOH HOH . C 3 HOH A 14 17 17 HOH HOH . C 3 HOH A 15 18 18 HOH HOH . C 3 HOH A 16 19 19 HOH HOH . C 3 HOH A 17 20 20 HOH HOH . C 3 HOH A 18 21 21 HOH HOH . C 3 HOH A 19 22 22 HOH HOH . C 3 HOH A 20 23 23 HOH HOH . C 3 HOH A 21 24 24 HOH HOH . C 3 HOH A 22 25 25 HOH HOH . C 3 HOH A 23 26 26 HOH HOH . C 3 HOH A 24 27 27 HOH HOH . C 3 HOH A 25 327 1 HOH HOH . C 3 HOH A 26 328 28 HOH HOH . C 3 HOH A 27 329 29 HOH HOH . C 3 HOH A 28 330 30 HOH HOH . C 3 HOH A 29 331 31 HOH HOH . C 3 HOH A 30 332 32 HOH HOH . C 3 HOH A 31 333 33 HOH HOH . C 3 HOH A 32 334 34 HOH HOH . C 3 HOH A 33 335 35 HOH HOH . C 3 HOH A 34 336 36 HOH HOH . C 3 HOH A 35 337 37 HOH HOH . C 3 HOH A 36 338 38 HOH HOH . C 3 HOH A 37 339 39 HOH HOH . C 3 HOH A 38 340 40 HOH HOH . C 3 HOH A 39 341 41 HOH HOH . C 3 HOH A 40 342 42 HOH HOH . C 3 HOH A 41 343 43 HOH HOH . C 3 HOH A 42 344 44 HOH HOH . C 3 HOH A 43 345 45 HOH HOH . C 3 HOH A 44 346 46 HOH HOH . C 3 HOH A 45 347 47 HOH HOH . C 3 HOH A 46 348 48 HOH HOH . C 3 HOH A 47 349 49 HOH HOH . C 3 HOH A 48 350 50 HOH HOH . C 3 HOH A 49 351 51 HOH HOH . C 3 HOH A 50 352 52 HOH HOH . C 3 HOH A 51 353 53 HOH HOH . C 3 HOH A 52 354 54 HOH HOH . C 3 HOH A 53 355 55 HOH HOH . C 3 HOH A 54 356 56 HOH HOH . C 3 HOH A 55 357 57 HOH HOH . C 3 HOH A 56 358 58 HOH HOH . C 3 HOH A 57 359 59 HOH HOH . C 3 HOH A 58 360 60 HOH HOH . C 3 HOH A 59 361 63 HOH HOH . C 3 HOH A 60 362 64 HOH HOH . C 3 HOH A 61 363 65 HOH HOH . C 3 HOH A 62 364 66 HOH HOH . C 3 HOH A 63 365 68 HOH HOH . C 3 HOH A 64 366 69 HOH HOH . C 3 HOH A 65 367 70 HOH HOH . C 3 HOH A 66 368 71 HOH HOH . C 3 HOH A 67 369 72 HOH HOH . C 3 HOH A 68 370 73 HOH HOH . C 3 HOH A 69 371 74 HOH HOH . C 3 HOH A 70 372 75 HOH HOH . C 3 HOH A 71 373 76 HOH HOH . C 3 HOH A 72 374 77 HOH HOH . C 3 HOH A 73 375 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAH 0FN . . . B 2 23.171 33.573 3.393 1 41.09 ? OAH 0FN 1 A 1 HETATM 2 C CAC 0FN . . . B 2 22.725 33.947 2.288 1 42.46 ? CAC 0FN 1 A 1 HETATM 3 C CAD 0FN . . . B 2 22.904 35.172 1.691 1 39.56 ? CAD 0FN 1 A 1 HETATM 4 C CAK 0FN . . . B 2 23.382 36.33 2.193 1 39.1 ? CAK 0FN 1 A 1 HETATM 5 C CAL 0FN . . . B 2 23.493 37.462 1.367 1 41.37 ? CAL 0FN 1 A 1 HETATM 6 C CAM 0FN . . . B 2 23.068 37.374 0.028 1 38.68 ? CAM 0FN 1 A 1 HETATM 7 C CAJ 0FN . . . B 2 22.543 36.141 -0.434 1 38.01 ? CAJ 0FN 1 A 1 HETATM 8 C CAE 0FN . . . B 2 22.493 35.086 0.381 1 37.9 ? CAE 0FN 1 A 1 HETATM 9 C CAB 0FN . . . B 2 22.029 33.829 0.172 1 41.82 ? CAB 0FN 1 A 1 HETATM 10 O OAI 0FN . . . B 2 21.614 33.357 -0.9 1 34.24 ? OAI 0FN 1 A 1 HETATM 11 C CAA 0FN . . . B 2 21.846 33.234 1.462 1 41.95 ? CAA 0FN 1 A 1 HETATM 12 C CAF 0FN . . . B 2 21.741 31.736 1.512 1 39.71 ? CAF 0FN 1 A 1 HETATM 13 N NAG 0FN . . . B 2 21.552 30.54 1.547 1 39.31 ? NAG 0FN 1 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 209 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #