data_3VBY
#
_model_server_result.job_id            D0Mg8hfg7wlyCOpgcDOKQA 
_model_server_result.datetime_utc      '2024-11-05 12:45:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vby 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2}' 
#
_entry.id    3VBY 
#
_exptl.entry_id    3VBY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              69.085 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            IMIDAZOLE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3VBY 
_cell.length_a            97 
_cell.length_b            97 
_cell.length_c            81 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VBY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C3 H5 N2 1' 
_chem_comp.formula_weight    69.085 
_chem_comp.id                IMD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              IMIDAZOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 IMD sing 200 n y 
N1 C5 IMD sing 201 n y 
N1 HN1 IMD sing 202 n n 
C2 N3 IMD doub 203 n y 
C2 H2 IMD sing 204 n n 
N3 C4 IMD sing 205 n y 
N3 HN3 IMD sing 206 n n 
C4 C5 IMD doub 207 n y 
C4 H4 IMD sing 208 n n 
C5 H5 IMD sing 209 n n 
#
_atom_sites.entry_id                     3VBY 
_atom_sites.fract_transf_matrix[1][1]    0.010309 
_atom_sites.fract_transf_matrix[1][2]    0.005952 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011904 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012346 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 0FR A 1 1 1 0FR DRG . 
C 3 IMD A 1 327 1 IMD IMD . 
D 3 IMD A 1 2 2 IMD IMD . 
E 4 HOH A 1 3 3 HOH HOH . 
E 4 HOH A 2 4 4 HOH HOH . 
E 4 HOH A 3 5 5 HOH HOH . 
E 4 HOH A 4 6 6 HOH HOH . 
E 4 HOH A 5 7 7 HOH HOH . 
E 4 HOH A 6 8 8 HOH HOH . 
E 4 HOH A 7 9 9 HOH HOH . 
E 4 HOH A 8 10 10 HOH HOH . 
E 4 HOH A 9 11 11 HOH HOH . 
E 4 HOH A 10 12 12 HOH HOH . 
E 4 HOH A 11 13 13 HOH HOH . 
E 4 HOH A 12 14 14 HOH HOH . 
E 4 HOH A 13 16 16 HOH HOH . 
E 4 HOH A 14 17 17 HOH HOH . 
E 4 HOH A 15 18 18 HOH HOH . 
E 4 HOH A 16 19 19 HOH HOH . 
E 4 HOH A 17 20 20 HOH HOH . 
E 4 HOH A 18 22 22 HOH HOH . 
E 4 HOH A 19 23 23 HOH HOH . 
E 4 HOH A 20 24 24 HOH HOH . 
E 4 HOH A 21 25 25 HOH HOH . 
E 4 HOH A 22 26 26 HOH HOH . 
E 4 HOH A 23 27 27 HOH HOH . 
E 4 HOH A 24 328 1 HOH HOH . 
E 4 HOH A 25 329 28 HOH HOH . 
E 4 HOH A 26 330 29 HOH HOH . 
E 4 HOH A 27 331 30 HOH HOH . 
E 4 HOH A 28 332 31 HOH HOH . 
E 4 HOH A 29 333 32 HOH HOH . 
E 4 HOH A 30 334 33 HOH HOH . 
E 4 HOH A 31 335 34 HOH HOH . 
E 4 HOH A 32 336 35 HOH HOH . 
E 4 HOH A 33 337 36 HOH HOH . 
E 4 HOH A 34 338 37 HOH HOH . 
E 4 HOH A 35 339 38 HOH HOH . 
E 4 HOH A 36 340 39 HOH HOH . 
E 4 HOH A 37 341 40 HOH HOH . 
E 4 HOH A 38 342 41 HOH HOH . 
E 4 HOH A 39 343 42 HOH HOH . 
E 4 HOH A 40 344 43 HOH HOH . 
E 4 HOH A 41 345 44 HOH HOH . 
E 4 HOH A 42 346 45 HOH HOH . 
E 4 HOH A 43 347 46 HOH HOH . 
E 4 HOH A 44 348 47 HOH HOH . 
E 4 HOH A 45 349 48 HOH HOH . 
E 4 HOH A 46 350 49 HOH HOH . 
E 4 HOH A 47 351 50 HOH HOH . 
E 4 HOH A 48 352 51 HOH HOH . 
E 4 HOH A 49 353 52 HOH HOH . 
E 4 HOH A 50 354 53 HOH HOH . 
E 4 HOH A 51 355 54 HOH HOH . 
E 4 HOH A 52 356 56 HOH HOH . 
E 4 HOH A 53 357 57 HOH HOH . 
E 4 HOH A 54 358 58 HOH HOH . 
E 4 HOH A 55 359 59 HOH HOH . 
E 4 HOH A 56 360 60 HOH HOH . 
E 4 HOH A 57 361 61 HOH HOH . 
E 4 HOH A 58 362 62 HOH HOH . 
E 4 HOH A 59 363 63 HOH HOH . 
E 4 HOH A 60 364 64 HOH HOH . 
E 4 HOH A 61 365 65 HOH HOH . 
E 4 HOH A 62 366 66 HOH HOH . 
E 4 HOH A 63 367 67 HOH HOH . 
E 4 HOH A 64 368 68 HOH HOH . 
E 4 HOH A 65 369 69 HOH HOH . 
E 4 HOH A 66 370 70 HOH HOH . 
E 4 HOH A 67 371 71 HOH HOH . 
E 4 HOH A 68 372 72 HOH HOH . 
E 4 HOH A 69 373 73 HOH HOH . 
E 4 HOH A 70 374 74 HOH HOH . 
E 4 HOH A 71 375 75 HOH HOH . 
E 4 HOH A 72 376 76 HOH HOH . 
E 4 HOH A 73 377 77 HOH HOH . 
E 4 HOH A 74 378 78 HOH HOH . 
E 4 HOH A 75 379 79 HOH HOH . 
E 4 HOH A 76 380 80 HOH HOH . 
E 4 HOH A 77 381 81 HOH HOH . 
E 4 HOH A 78 382 82 HOH HOH . 
E 4 HOH A 79 383 83 HOH HOH . 
E 4 HOH A 80 384 84 HOH HOH . 
E 4 HOH A 81 385 85 HOH HOH . 
E 4 HOH A 82 386 86 HOH HOH . 
E 4 HOH A 83 387 87 HOH HOH . 
E 4 HOH A 84 388 88 HOH HOH . 
E 4 HOH A 85 389 89 HOH HOH . 
E 4 HOH A 86 390 90 HOH HOH . 
E 4 HOH A 87 391 91 HOH HOH . 
E 4 HOH A 88 392 92 HOH HOH . 
E 4 HOH A 89 393 93 HOH HOH . 
E 4 HOH A 90 394 94 HOH HOH . 
E 4 HOH A 91 395 96 HOH HOH . 
E 4 HOH A 92 396 97 HOH HOH . 
E 4 HOH A 93 397 98 HOH HOH . 
E 4 HOH A 94 398 99 HOH HOH . 
E 4 HOH A 95 399 100 HOH HOH . 
E 4 HOH A 96 400 101 HOH HOH . 
E 4 HOH A 97 401 102 HOH HOH . 
E 4 HOH A 98 402 103 HOH HOH . 
E 4 HOH A 99 403 104 HOH HOH . 
E 4 HOH A 100 404 105 HOH HOH . 
E 4 HOH A 101 405 106 HOH HOH . 
E 4 HOH A 102 406 108 HOH HOH . 
E 4 HOH A 103 407 109 HOH HOH . 
E 4 HOH A 104 408 110 HOH HOH . 
E 4 HOH A 105 409 111 HOH HOH . 
E 4 HOH A 106 410 112 HOH HOH . 
E 4 HOH A 107 411 113 HOH HOH . 
E 4 HOH A 108 412 114 HOH HOH . 
E 4 HOH A 109 413 116 HOH HOH . 
E 4 HOH A 110 414 117 HOH HOH . 
E 4 HOH A 111 415 118 HOH HOH . 
E 4 HOH A 112 416 119 HOH HOH . 
E 4 HOH A 113 417 120 HOH HOH . 
E 4 HOH A 114 418 121 HOH HOH . 
E 4 HOH A 115 419 122 HOH HOH . 
E 4 HOH A 116 420 123 HOH HOH . 
E 4 HOH A 117 421 124 HOH HOH . 
E 4 HOH A 118 422 125 HOH HOH . 
E 4 HOH A 119 423 126 HOH HOH . 
E 4 HOH A 120 424 127 HOH HOH . 
E 4 HOH A 121 425 128 HOH HOH . 
E 4 HOH A 122 426 129 HOH HOH . 
E 4 HOH A 123 427 130 HOH HOH . 
E 4 HOH A 124 428 131 HOH HOH . 
E 4 HOH A 125 429 132 HOH HOH . 
E 4 HOH A 126 430 133 HOH HOH . 
E 4 HOH A 127 431 134 HOH HOH . 
E 4 HOH A 128 432 135 HOH HOH . 
E 4 HOH A 129 433 136 HOH HOH . 
E 4 HOH A 130 434 137 HOH HOH . 
E 4 HOH A 131 435 138 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 IMD . . . D 3 31.899 28.831 -12.655 1 59.72 ? N1 IMD 2 A 1 
HETATM 2 C C2 IMD . . . D 3 31.844 27.46 -12.737 1 59.16 ? C2 IMD 2 A 1 
HETATM 3 N N3 IMD . . . D 3 31.776 27.12 -14.042 1 60.95 ? N3 IMD 2 A 1 
HETATM 4 C C4 IMD . . . D 3 31.772 28.269 -14.807 1 60.41 ? C4 IMD 2 A 1 
HETATM 5 C C5 IMD . . . D 3 31.851 29.351 -13.922 1 60.61 ? C5 IMD 2 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           5 
#